Wall clock time and date at job start Thu Apr 9 2020 11:59:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 109.86955 * 2 1 4 4 C 1.54098 * 109.87569 * 238.99326 * 2 1 3 5 5 C 1.54805 * 104.18730 * 238.39173 * 4 2 1 6 6 H 1.09007 * 110.90773 * 97.35831 * 5 4 2 7 7 C 1.50700 * 110.91046 * 220.92223 * 5 4 2 8 8 O 1.20822 * 119.99958 * 357.07356 * 7 5 4 9 9 O 1.34234 * 120.00068 * 177.07547 * 7 5 4 10 10 C 1.45196 * 116.99938 * 179.97438 * 9 7 5 11 11 C 1.52998 * 109.47070 * 179.97438 * 10 9 7 12 12 C 1.50703 * 109.47221 * 180.02562 * 11 10 9 13 13 H 1.07998 * 119.99956 * 359.97438 * 12 11 10 14 14 C 1.37876 * 120.00171 * 180.02562 * 12 11 10 15 15 N 1.31513 * 120.00377 * 179.97438 * 14 12 11 16 16 Si 1.86810 * 119.99898 * 359.97438 * 14 12 11 17 17 H 1.48498 * 109.47093 * 90.00118 * 16 14 12 18 18 H 1.48500 * 109.46823 * 210.00246 * 16 14 12 19 19 H 1.48499 * 109.46973 * 329.99936 * 16 14 12 20 20 C 1.54994 * 102.12715 * 339.14028 * 5 4 2 21 21 O 1.43736 * 110.00402 * 121.08497 * 2 1 3 22 22 H 1.09000 * 109.47322 * 181.00864 * 1 2 3 23 23 H 1.09006 * 109.47073 * 301.00494 * 1 2 3 24 24 H 1.09000 * 109.47497 * 61.00360 * 1 2 3 25 25 H 1.09003 * 110.48614 * 119.71862 * 4 2 1 26 26 H 1.08991 * 110.60691 * 357.12910 * 4 2 1 27 27 H 1.08996 * 109.47465 * 299.99911 * 10 9 7 28 28 H 1.08999 * 109.47008 * 59.99921 * 10 9 7 29 29 H 1.08998 * 109.47592 * 300.00297 * 11 10 9 30 30 H 1.08999 * 109.47084 * 60.00195 * 11 10 9 31 31 H 0.96994 * 120.00157 * 180.02562 * 15 14 12 32 32 H 1.09001 * 110.62235 * 155.50479 * 20 5 4 33 33 H 1.08995 * 110.61725 * 278.50343 * 20 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9004 1.0251 0.0000 4 6 2.0539 -0.7465 -1.2421 5 6 2.9226 -1.8881 -0.6603 6 1 2.3593 -2.8201 -0.6129 7 6 4.1851 -2.0662 -1.4637 8 8 4.3729 -1.3950 -2.4506 9 8 5.1010 -2.9706 -1.0829 10 6 6.2924 -3.0884 -1.9045 11 6 7.2127 -4.1605 -1.3176 12 6 8.4495 -4.2823 -2.1700 13 1 8.5671 -3.6579 -3.0432 14 6 9.4304 -5.1917 -1.8356 15 7 10.5095 -5.2985 -2.5797 16 14 9.2266 -6.2724 -0.3255 17 1 8.5375 -7.5312 -0.7070 18 1 10.5626 -6.5909 0.2391 19 1 8.4178 -5.5539 0.6918 20 6 3.2418 -1.3618 0.7622 21 8 2.0217 -0.6973 1.1567 22 1 -0.3634 -1.0275 0.0181 23 1 -0.3633 0.5294 0.8809 24 1 -0.3634 0.4982 -0.8988 25 1 2.6596 -0.0826 -1.8589 26 1 1.2261 -1.1546 -1.8219 27 1 6.0081 -3.3687 -2.9187 28 1 6.8156 -2.1324 -1.9250 29 1 7.4970 -3.8798 -0.3035 30 1 6.6897 -5.1166 -1.2968 31 1 11.1994 -5.9385 -2.3447 32 1 3.4647 -2.1887 1.4365 33 1 4.0711 -0.6551 0.7328 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000784269377.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 11:59:17 Heat of formation + Delta-G solvation = -168.413904 kcal Electronic energy + Delta-G solvation = -15684.852077 eV Core-core repulsion = 12902.428138 eV Total energy + Delta-G solvation = -2782.423938 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 228.119 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.87446 -40.17763 -37.80277 -35.41837 -33.60311 -33.03719 -32.45691 -27.61445 -26.81747 -24.88981 -22.71745 -22.33667 -21.30110 -19.37273 -18.70107 -17.79106 -17.73473 -16.71559 -16.37485 -16.36941 -15.91105 -15.29540 -14.81318 -14.49804 -14.26826 -13.57404 -13.44589 -13.28456 -13.15391 -12.98137 -12.60833 -12.50023 -12.29631 -11.89433 -11.84012 -11.80791 -11.58541 -11.47501 -11.43668 -10.82203 -10.77320 -8.35392 -6.44031 1.04015 1.38348 1.40053 1.52496 1.57892 2.33876 2.81393 2.99639 3.20909 3.64740 3.70203 3.91546 4.05868 4.10776 4.14569 4.17292 4.43156 4.59597 4.60144 4.68091 4.81244 4.91371 4.92083 5.02708 5.09790 5.27240 5.31638 5.47588 5.51432 5.82214 6.14077 6.61210 6.62679 7.21346 8.80738 Molecular weight = 228.12amu Principal moments of inertia in cm(-1) A = 0.057791 B = 0.004851 C = 0.004576 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 484.384521 B = 5770.093888 C = 6117.339313 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.067 3.933 3 H 0.074 0.926 4 C -0.139 4.139 5 C -0.114 4.114 6 H 0.146 0.854 7 C 0.466 3.534 8 O -0.538 6.538 9 O -0.356 6.356 10 C 0.092 3.908 11 C -0.004 4.004 12 C -0.544 4.544 13 H 0.034 0.966 14 C 0.012 3.988 15 N -0.945 5.945 16 Si 0.955 3.045 17 H -0.263 1.263 18 H -0.281 1.281 19 H -0.243 1.243 20 C 0.064 3.936 21 O -0.380 6.380 22 H 0.066 0.934 23 H 0.065 0.935 24 H 0.086 0.914 25 H 0.080 0.920 26 H 0.106 0.894 27 H 0.058 0.942 28 H 0.057 0.943 29 H 0.037 0.963 30 H 0.035 0.965 31 H 0.271 0.729 32 H 0.123 0.877 33 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.414 7.379 8.162 23.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.010 3.990 3 H 0.092 0.908 4 C -0.177 4.177 5 C -0.133 4.133 6 H 0.163 0.837 7 C 0.310 3.690 8 O -0.428 6.428 9 O -0.272 6.272 10 C 0.019 3.981 11 C -0.041 4.041 12 C -0.582 4.582 13 H 0.053 0.947 14 C -0.186 4.186 15 N -0.584 5.584 16 Si 0.777 3.223 17 H -0.188 1.188 18 H -0.207 1.207 19 H -0.166 1.166 20 C -0.013 4.013 21 O -0.300 6.300 22 H 0.085 0.915 23 H 0.084 0.916 24 H 0.105 0.895 25 H 0.099 0.901 26 H 0.124 0.876 27 H 0.076 0.924 28 H 0.076 0.924 29 H 0.055 0.945 30 H 0.054 0.946 31 H 0.080 0.920 32 H 0.141 0.859 33 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -20.260 7.484 8.042 23.047 hybrid contribution 0.903 -0.368 -0.408 1.057 sum -19.357 7.115 7.633 21.991 Atomic orbital electron populations 1.21943 0.91670 1.03414 1.03417 1.22931 0.96731 0.95824 0.83522 0.90788 1.23085 0.99894 0.96033 0.98671 1.22737 0.90523 1.04037 0.95997 0.83655 1.23944 0.85255 0.76150 0.83645 1.90636 1.78365 1.45771 1.27999 1.86477 1.30250 1.55725 1.54791 1.22979 0.81800 1.00154 0.93199 1.19466 0.92741 0.94715 0.97173 1.21125 1.03315 1.22012 1.11763 0.94731 1.25967 0.94104 0.98228 1.00343 1.70040 1.09847 1.37436 1.41111 0.85595 0.78178 0.79191 0.79352 1.18756 1.20664 1.16585 1.23503 0.87791 0.97399 0.92603 1.88910 1.39352 1.67803 1.33923 0.91498 0.91620 0.89500 0.90143 0.87579 0.92393 0.92428 0.94484 0.94624 0.92029 0.85923 0.92048 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.83 9.37 71.98 0.67 -1.15 16 2 C 0.07 1.15 4.05 30.96 0.13 1.27 16 3 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 4 C -0.14 -2.60 6.04 31.58 0.19 -2.41 16 5 C -0.11 -2.44 3.63 -10.24 -0.04 -2.48 16 6 H 0.15 2.47 8.14 -2.38 -0.02 2.45 16 7 C 0.47 14.52 7.27 71.24 0.52 15.04 16 8 O -0.54 -19.95 15.22 21.98 0.33 -19.62 16 9 O -0.36 -12.57 10.22 -51.46 -0.53 -13.09 16 10 C 0.09 3.86 5.40 71.98 0.39 4.25 16 11 C 0.00 -0.16 4.42 29.85 0.13 -0.03 16 12 C -0.54 -31.30 9.66 25.60 0.25 -31.05 16 13 H 0.03 2.19 7.99 -2.91 -0.02 2.17 16 14 C 0.01 0.67 5.47 84.65 0.46 1.13 16 15 N -0.94 -58.53 13.96 21.45 0.30 -58.23 16 16 Si 0.95 42.91 27.47 68.60 1.88 44.79 16 17 H -0.26 -11.27 7.11 99.48 0.71 -10.56 16 18 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 19 H -0.24 -10.04 6.54 99.48 0.65 -9.39 16 20 C 0.06 1.30 7.17 72.66 0.52 1.83 16 21 O -0.38 -8.00 11.19 -148.98 -1.67 -9.67 16 22 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 23 H 0.06 0.80 8.14 -2.38 -0.02 0.78 16 24 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 25 H 0.08 1.79 6.90 -2.39 -0.02 1.78 16 26 H 0.11 1.57 7.70 -2.39 -0.02 1.55 16 27 H 0.06 2.49 8.13 -2.39 -0.02 2.47 16 28 H 0.06 2.48 8.13 -2.39 -0.02 2.46 16 29 H 0.04 1.67 7.20 -2.39 -0.02 1.65 16 30 H 0.04 1.59 7.57 -2.39 -0.02 1.57 16 31 H 0.27 15.51 8.31 -92.71 -0.77 14.74 16 32 H 0.12 2.17 8.14 -2.39 -0.02 2.15 16 33 H 0.06 1.33 8.04 -2.39 -0.02 1.31 16 Total: -1.00 -67.75 280.13 4.57 -63.18 By element: Atomic # 1 Polarization: 5.22 SS G_CDS: 1.03 Total: 6.25 kcal Atomic # 6 Polarization: -16.83 SS G_CDS: 3.22 Total: -13.60 kcal Atomic # 7 Polarization: -58.53 SS G_CDS: 0.30 Total: -58.23 kcal Atomic # 8 Polarization: -40.52 SS G_CDS: -1.86 Total: -42.38 kcal Atomic # 14 Polarization: 42.91 SS G_CDS: 1.88 Total: 44.79 kcal Total: -67.75 4.57 -63.18 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000784269377.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -105.238 kcal (2) G-P(sol) polarization free energy of solvation -67.750 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -172.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.575 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.175 kcal (6) G-S(sol) free energy of system = (1) + (5) -168.414 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds