Wall clock time and date at job start Thu Apr 9 2020 11:59:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08998 * 110.57529 * 2 1 4 4 O 1.45699 * 110.52027 * 122.70327 * 2 1 3 5 5 C 1.33773 * 109.47635 * 118.63423 * 4 2 1 6 6 O 1.21518 * 123.06830 * 179.97438 * 5 4 2 7 7 N 1.34001 * 113.85961 * 359.97438 * 5 4 2 8 8 C 1.47096 * 108.87797 * 0.02562 * 7 5 4 9 9 H 1.08996 * 110.56594 * 118.57358 * 8 7 5 10 10 C 1.50710 * 110.56103 * 241.42461 * 8 7 5 11 11 O 1.21287 * 119.99942 * 14.35584 * 10 8 7 12 12 N 1.34768 * 119.99918 * 194.35562 * 10 8 7 13 13 C 1.46507 * 120.00082 * 0.02562 * 12 10 8 14 14 C 1.37091 * 120.00154 * 180.02562 * 12 10 8 15 15 H 1.07999 * 120.00520 * 25.08173 * 14 12 10 16 16 C 1.38957 * 120.00216 * 205.08614 * 14 12 10 17 17 N 1.31415 * 119.99820 * 12.66465 * 16 14 12 18 18 Si 1.86793 * 120.00070 * 192.66175 * 16 14 12 19 19 H 1.48501 * 109.47188 * 0.02562 * 18 16 14 20 20 H 1.48500 * 109.47206 * 119.99978 * 18 16 14 21 21 H 1.48505 * 109.47359 * 240.00016 * 18 16 14 22 22 H 1.09001 * 109.47250 * 298.75366 * 1 2 3 23 23 H 1.09000 * 109.47089 * 58.75180 * 1 2 3 24 24 H 1.09003 * 109.47077 * 178.75171 * 1 2 3 25 25 H 0.96998 * 125.56104 * 179.97438 * 7 5 4 26 26 H 1.08997 * 109.47046 * 87.97806 * 13 12 10 27 27 H 1.09000 * 109.47399 * 207.98062 * 13 12 10 28 28 H 1.09006 * 109.46858 * 327.97844 * 13 12 10 29 29 H 0.96993 * 119.99617 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9130 1.0205 0.0000 4 8 2.0407 -0.7372 1.1482 5 6 2.7631 -1.7799 0.7234 6 8 3.3057 -2.5623 1.4785 7 7 2.8337 -1.8828 -0.6108 8 6 2.0699 -0.7800 -1.2143 9 1 2.7218 -0.1475 -1.8168 10 6 0.9337 -1.3164 -2.0465 11 8 0.5973 -2.4765 -1.9376 12 7 0.2914 -0.5068 -2.9116 13 6 0.6982 0.8945 -3.0435 14 6 -0.7425 -0.9945 -3.6683 15 1 -1.3089 -1.8470 -3.3234 16 6 -1.0618 -0.3922 -4.8791 17 7 -0.2348 0.4739 -5.4204 18 14 -2.6664 -0.8136 -5.7375 19 1 -3.4148 -1.8079 -4.9274 20 1 -3.4843 0.4165 -5.8896 21 1 -2.3761 -1.3839 -7.0776 22 1 -0.3634 0.4944 0.9009 23 1 -0.3633 0.5331 -0.8786 24 1 -0.3633 -1.0275 -0.0224 25 1 3.3113 -2.5716 -1.0990 26 1 1.4888 0.9746 -3.7895 27 1 -0.1575 1.4934 -3.3551 28 1 1.0659 1.2579 -2.0838 29 1 -0.4578 0.8946 -6.2654 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000789965001.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 11:59:22 Heat of formation + Delta-G solvation = -115.621141 kcal Electronic energy + Delta-G solvation = -16639.604761 eV Core-core repulsion = 13755.929746 eV Total energy + Delta-G solvation = -2883.675016 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 228.094 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -42.96768 -40.29981 -38.37997 -36.80599 -35.62194 -33.98268 -32.67500 -28.65274 -27.80468 -26.20759 -24.11227 -23.33886 -21.02843 -19.34916 -18.90963 -18.31212 -17.60386 -17.31358 -16.66130 -16.23303 -15.99628 -15.69723 -15.29734 -14.69564 -14.27132 -14.00867 -13.59429 -13.36394 -13.20991 -12.82959 -12.69331 -12.49325 -12.32573 -12.12198 -11.96461 -11.83507 -11.13454 -11.00808 -10.08342 -9.67528 -8.36020 -6.00726 1.34602 1.41373 1.46269 1.56642 1.68193 1.82689 2.22501 2.43721 2.94673 2.97669 3.22327 3.61745 3.77776 3.97508 4.19842 4.29883 4.59926 4.73824 4.77916 5.05228 5.18283 5.44642 5.46399 5.67141 6.05405 6.13895 6.44649 6.92480 7.14522 7.40294 7.94246 8.65987 Molecular weight = 228.09amu Principal moments of inertia in cm(-1) A = 0.052055 B = 0.007807 C = 0.007584 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 537.768222 B = 3585.602184 C = 3691.041115 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.084 3.916 3 H 0.179 0.821 4 O -0.330 6.330 5 C 0.650 3.350 6 O -0.572 6.572 7 N -0.699 5.699 8 C 0.087 3.913 9 H 0.154 0.846 10 C 0.435 3.565 11 O -0.625 6.625 12 N -0.443 5.443 13 C 0.106 3.894 14 C -0.339 4.339 15 H 0.068 0.932 16 C 0.008 3.992 17 N -0.887 5.887 18 Si 0.981 3.019 19 H -0.277 1.277 20 H -0.264 1.264 21 H -0.280 1.280 22 H 0.099 0.901 23 H 0.096 0.904 24 H 0.032 0.968 25 H 0.440 0.560 26 H 0.052 0.948 27 H 0.062 0.938 28 H 0.079 0.921 29 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.711 7.614 3.592 8.844 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.029 3.971 3 H 0.196 0.804 4 O -0.240 6.240 5 C 0.403 3.597 6 O -0.461 6.461 7 N -0.369 5.369 8 C -0.022 4.022 9 H 0.172 0.828 10 C 0.223 3.777 11 O -0.511 6.511 12 N -0.161 5.161 13 C -0.037 4.037 14 C -0.468 4.468 15 H 0.086 0.914 16 C -0.195 4.195 17 N -0.525 5.525 18 Si 0.806 3.194 19 H -0.202 1.202 20 H -0.189 1.189 21 H -0.206 1.206 22 H 0.118 0.882 23 H 0.114 0.886 24 H 0.052 0.948 25 H 0.284 0.716 26 H 0.071 0.929 27 H 0.080 0.920 28 H 0.097 0.903 29 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 2.669 7.034 4.153 8.593 hybrid contribution -0.634 -0.880 -1.138 1.572 sum 2.035 6.154 3.015 7.149 Atomic orbital electron populations 1.22320 0.92233 1.02652 1.05439 1.24276 0.96599 0.97567 0.78676 0.80414 1.87244 1.63380 1.38980 1.34442 1.18482 0.77861 0.80588 0.82779 1.90995 1.51907 1.44081 1.59140 1.45627 1.53736 1.32224 1.05313 1.22625 0.93962 0.89207 0.96429 0.82835 1.20568 0.85592 0.86096 0.85463 1.90555 1.69009 1.19720 1.71863 1.43741 1.28702 1.09611 1.34090 1.21703 1.01159 0.80991 0.99805 1.19527 1.08978 1.16335 1.01929 0.91402 1.25929 1.01309 0.96369 0.95916 1.70014 1.35384 1.28455 1.18663 0.85051 0.78229 0.78465 0.77681 1.20203 1.18926 1.20593 0.88188 0.88559 0.94839 0.71633 0.92941 0.91956 0.90312 0.91533 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.80 8.37 71.98 0.60 -4.20 15 2 C 0.08 2.14 3.55 30.96 0.11 2.25 15 3 H 0.18 2.59 8.01 -2.39 -0.02 2.57 15 4 O -0.33 -10.67 10.80 -47.33 -0.51 -11.18 15 5 C 0.65 23.89 9.16 129.91 1.19 25.08 15 6 O -0.57 -24.80 18.04 19.63 0.35 -24.44 15 7 N -0.70 -22.93 5.63 -573.40 -3.23 -26.16 15 8 C 0.09 2.65 3.19 44.50 0.14 2.79 15 9 H 0.15 3.50 7.46 -2.39 -0.02 3.48 15 10 C 0.44 18.58 4.85 87.66 0.43 19.00 15 11 O -0.62 -33.11 16.16 -3.05 -0.05 -33.16 15 12 N -0.44 -19.48 2.37 -658.87 -1.56 -21.04 15 13 C 0.11 3.67 7.13 127.77 0.91 4.58 15 14 C -0.34 -17.44 9.22 84.04 0.78 -16.66 15 15 H 0.07 3.85 7.46 -2.91 -0.02 3.83 15 16 C 0.01 0.39 5.05 84.93 0.43 0.82 15 17 N -0.89 -42.25 10.87 21.67 0.24 -42.02 15 18 Si 0.98 39.47 29.57 68.60 2.03 41.50 15 19 H -0.28 -11.51 7.11 99.48 0.71 -10.81 15 20 H -0.26 -9.96 7.11 99.48 0.71 -9.26 15 21 H -0.28 -11.22 7.11 99.48 0.71 -10.51 15 22 H 0.10 2.24 8.14 -2.39 -0.02 2.22 15 23 H 0.10 2.77 5.34 -2.39 -0.01 2.76 15 24 H 0.03 1.23 7.26 -2.39 -0.02 1.21 15 25 H 0.44 13.55 8.96 -92.71 -0.83 12.72 15 26 H 0.05 1.90 7.71 -2.39 -0.02 1.89 15 27 H 0.06 2.36 7.00 -2.39 -0.02 2.35 15 28 H 0.08 1.87 5.11 -2.38 -0.01 1.86 15 29 H 0.27 12.33 8.31 -92.71 -0.77 11.56 15 Total: -1.00 -69.19 246.03 2.22 -66.97 By element: Atomic # 1 Polarization: 15.50 SS G_CDS: 0.36 Total: 15.87 kcal Atomic # 6 Polarization: 29.08 SS G_CDS: 4.58 Total: 33.66 kcal Atomic # 7 Polarization: -84.66 SS G_CDS: -4.55 Total: -89.22 kcal Atomic # 8 Polarization: -68.58 SS G_CDS: -0.21 Total: -68.79 kcal Atomic # 14 Polarization: 39.47 SS G_CDS: 2.03 Total: 41.50 kcal Total: -69.19 2.22 -66.97 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000789965001.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.647 kcal (2) G-P(sol) polarization free energy of solvation -69.191 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.838 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.217 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.974 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.621 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds