Wall clock time and date at job start Thu Apr 9 2020 11:59:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31444 * 1 3 3 Si 1.86798 * 119.99648 * 2 1 4 4 H 1.48490 * 109.47339 * 359.97438 * 3 2 1 5 5 H 1.48493 * 109.47239 * 120.00334 * 3 2 1 6 6 H 1.48504 * 109.46636 * 239.99893 * 3 2 1 7 7 C 1.38754 * 119.99860 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99460 * 179.97438 * 7 2 1 9 9 O 1.34916 * 120.00273 * 359.97438 * 7 2 1 10 10 C 1.34317 * 117.00012 * 179.97438 * 9 7 2 11 11 O 1.21206 * 119.99727 * 0.02562 * 10 9 7 12 12 C 1.50700 * 119.99622 * 180.02562 * 10 9 7 13 13 C 1.53008 * 109.46687 * 180.02562 * 12 10 9 14 14 H 1.09002 * 109.46824 * 54.99994 * 13 12 10 15 15 C 1.52997 * 109.46988 * 295.00028 * 13 12 10 16 16 C 1.53001 * 109.47095 * 179.97438 * 15 13 12 17 17 C 1.53007 * 109.46794 * 60.00127 * 16 15 13 18 18 C 1.53002 * 109.46952 * 300.00271 * 17 16 15 19 19 C 1.52994 * 109.47481 * 59.99960 * 18 17 16 20 20 H 1.09000 * 109.47248 * 59.99727 * 19 18 17 21 21 O 1.42901 * 109.47084 * 179.97438 * 19 18 17 22 22 H 0.96996 * 120.00358 * 359.97438 * 1 2 3 23 23 H 1.08999 * 109.47405 * 300.00194 * 12 10 9 24 24 H 1.08993 * 109.47299 * 60.00548 * 12 10 9 25 25 H 1.09000 * 109.47355 * 300.00217 * 15 13 12 26 26 H 1.09001 * 109.46985 * 60.00230 * 15 13 12 27 27 H 1.09000 * 109.47403 * 300.00441 * 16 15 13 28 28 H 1.08990 * 109.47428 * 179.97438 * 16 15 13 29 29 H 1.09002 * 109.47105 * 180.02562 * 17 16 15 30 30 H 1.09000 * 109.46889 * 60.00000 * 17 16 15 31 31 H 1.09000 * 109.47102 * 299.99598 * 18 17 16 32 32 H 1.09002 * 109.47201 * 180.02562 * 18 17 16 33 33 H 0.96698 * 113.99734 * 299.99952 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3144 0.0000 0.0000 3 14 2.2483 1.6178 0.0000 4 1 1.2834 2.7464 -0.0006 5 1 3.1021 1.6965 1.2124 6 1 3.1021 1.6964 -1.2126 7 6 2.0082 -1.2017 0.0005 8 1 3.0882 -1.2016 0.0001 9 8 1.3336 -2.3701 0.0016 10 6 2.0652 -3.4965 0.0015 11 8 3.2756 -3.4330 0.0010 12 6 1.3810 -4.8393 0.0021 13 6 2.4348 -5.9486 0.0025 14 1 3.1124 -5.8056 0.8443 15 6 3.2280 -5.8990 -1.3048 16 6 4.2822 -7.0078 -1.3041 17 6 3.5921 -8.3675 -1.1776 18 6 2.7987 -8.4170 0.1298 19 6 1.7446 -7.3082 0.1291 20 1 1.0671 -7.4514 -0.7127 21 8 1.0034 -7.3549 1.3499 22 1 -0.4850 0.8400 0.0004 23 1 0.7585 -4.9295 0.8923 24 1 0.7579 -4.9299 -0.8876 25 1 2.5504 -6.0418 -2.1466 26 1 3.7200 -4.9305 -1.3947 27 1 4.9597 -6.8646 -0.4624 28 1 4.8470 -6.9728 -2.2356 29 1 4.3431 -9.1575 -1.1766 30 1 2.9145 -8.5108 -2.0194 31 1 3.4763 -8.2738 0.9715 32 1 2.3074 -9.3858 0.2202 33 1 0.5387 -8.1902 1.4961 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000796135765.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 11:59:35 Heat of formation + Delta-G solvation = -159.018761 kcal Electronic energy + Delta-G solvation = -16225.109879 eV Core-core repulsion = 13443.093345 eV Total energy + Delta-G solvation = -2782.016534 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 228.119 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.56447 -38.38933 -35.58522 -35.00833 -32.28453 -32.02628 -29.57262 -27.16161 -24.93824 -22.57360 -21.67264 -19.88421 -19.39110 -17.63026 -17.16174 -16.41411 -15.15069 -14.95774 -14.66804 -14.30598 -14.24870 -13.74147 -13.46858 -12.81984 -12.66604 -12.14080 -12.00481 -11.60778 -11.50768 -11.16299 -11.06467 -10.79948 -10.55358 -10.41794 -10.38031 -10.14877 -9.91479 -9.75535 -9.65606 -8.78606 -8.49482 -6.33041 -4.00765 3.18646 3.22780 3.27120 3.65590 4.01176 4.26055 4.55309 4.74684 4.90092 5.09795 5.18413 5.26523 5.32846 5.45282 5.53539 5.58503 5.65962 5.80022 5.96837 6.05368 6.12081 6.14962 6.26968 6.35399 6.48260 6.71060 6.73994 6.96576 7.47533 7.72867 8.04564 8.82685 9.15881 9.97453 10.85361 Molecular weight = 228.12amu Principal moments of inertia in cm(-1) A = 0.049308 B = 0.005988 C = 0.005530 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 567.728482 B = 4675.286652 C = 5061.988948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.041 3.959 3 Si 0.943 3.057 4 H -0.279 1.279 5 H -0.270 1.270 6 H -0.271 1.271 7 C -0.381 4.381 8 H 0.094 0.906 9 O -0.218 6.218 10 C 0.400 3.600 11 O -0.556 6.556 12 C -0.098 4.098 13 C -0.060 4.060 14 H 0.083 0.917 15 C -0.121 4.121 16 C -0.119 4.119 17 C -0.117 4.117 18 C -0.149 4.149 19 C 0.109 3.891 20 H 0.054 0.946 21 O -0.563 6.563 22 H 0.269 0.731 23 H 0.098 0.902 24 H 0.086 0.914 25 H 0.056 0.944 26 H 0.095 0.905 27 H 0.063 0.937 28 H 0.061 0.939 29 H 0.060 0.940 30 H 0.061 0.939 31 H 0.070 0.930 32 H 0.060 0.940 33 H 0.372 0.628 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.878 -15.207 -1.749 15.575 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.505 5.505 2 C -0.163 4.163 3 Si 0.768 3.232 4 H -0.204 1.204 5 H -0.196 1.196 6 H -0.196 1.196 7 C -0.458 4.458 8 H 0.111 0.889 9 O -0.125 6.125 10 C 0.247 3.753 11 O -0.454 6.454 12 C -0.136 4.136 13 C -0.079 4.079 14 H 0.101 0.899 15 C -0.158 4.158 16 C -0.157 4.157 17 C -0.154 4.154 18 C -0.187 4.187 19 C 0.050 3.950 20 H 0.072 0.928 21 O -0.368 6.368 22 H 0.078 0.922 23 H 0.116 0.884 24 H 0.104 0.896 25 H 0.074 0.926 26 H 0.113 0.887 27 H 0.082 0.918 28 H 0.079 0.921 29 H 0.079 0.921 30 H 0.080 0.920 31 H 0.089 0.911 32 H 0.079 0.921 33 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges 3.235 -14.400 -1.695 14.856 hybrid contribution 0.138 0.178 -0.055 0.232 sum 3.373 -14.222 -1.751 14.721 Atomic orbital electron populations 1.69989 1.05978 1.27610 1.46962 1.25318 0.95781 0.98813 0.96381 0.85760 0.78605 0.79623 0.79250 1.20441 1.19561 1.19579 1.21153 0.92286 0.80074 1.52275 0.88854 1.83893 1.39456 1.13446 1.75722 1.23260 0.86730 0.87311 0.78001 1.90494 1.15784 1.88082 1.51055 1.21099 0.98465 0.89442 1.04573 1.20863 0.96260 0.90997 0.99786 0.89864 1.21743 0.97482 1.00802 0.95807 1.21549 0.98193 0.94117 1.01808 1.21507 0.99055 0.97801 0.97077 1.22246 0.99040 0.98369 0.99038 1.21879 0.91664 0.95203 0.86250 0.92767 1.86591 1.67842 1.40946 1.41437 0.92152 0.88403 0.89601 0.92557 0.88710 0.91836 0.92062 0.92128 0.92037 0.91138 0.92102 0.78181 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.18 13.67 55.48 0.76 -25.43 16 2 C 0.04 1.18 5.49 -17.53 -0.10 1.08 16 3 Si 0.94 21.87 29.55 -169.99 -5.02 16.85 16 4 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 5 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 6 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 7 C -0.38 -11.63 9.65 30.92 0.30 -11.33 16 8 H 0.09 2.84 6.86 -52.49 -0.36 2.48 16 9 O -0.22 -6.49 9.75 -20.71 -0.20 -6.69 16 10 C 0.40 10.16 7.62 36.01 0.27 10.44 16 11 O -0.56 -14.91 13.20 -19.05 -0.25 -15.16 16 12 C -0.10 -1.90 5.21 -27.88 -0.15 -2.04 16 13 C -0.06 -1.00 1.58 -90.62 -0.14 -1.14 16 14 H 0.08 1.54 7.96 -51.93 -0.41 1.13 16 15 C -0.12 -1.89 4.94 -26.73 -0.13 -2.02 16 16 C -0.12 -1.50 5.92 -26.73 -0.16 -1.66 16 17 C -0.12 -1.21 5.92 -26.73 -0.16 -1.37 16 18 C -0.15 -1.59 5.54 -26.73 -0.15 -1.74 16 19 C 0.11 1.40 2.90 -26.73 -0.08 1.32 16 20 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 21 O -0.56 -7.37 12.56 -35.23 -0.44 -7.81 16 22 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 23 H 0.10 1.89 7.54 -51.93 -0.39 1.50 16 24 H 0.09 1.52 8.14 -51.93 -0.42 1.10 16 25 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 26 H 0.09 1.81 5.95 -51.93 -0.31 1.50 16 27 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 28 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 30 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 32 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.37 3.02 9.08 45.56 0.41 3.43 16 LS Contribution 273.80 15.07 4.13 4.13 Total: -1.00 -33.99 273.80 -5.52 -39.51 By element: Atomic # 1 Polarization: 7.07 SS G_CDS: -4.00 Total: 3.07 kcal Atomic # 6 Polarization: -7.98 SS G_CDS: -0.49 Total: -8.47 kcal Atomic # 7 Polarization: -26.18 SS G_CDS: 0.76 Total: -25.43 kcal Atomic # 8 Polarization: -28.76 SS G_CDS: -0.90 Total: -29.66 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 4.13 Total: 4.13 kcal Total: -33.99 -5.52 -39.51 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000796135765.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -119.506 kcal (2) G-P(sol) polarization free energy of solvation -33.993 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.499 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.520 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.513 kcal (6) G-S(sol) free energy of system = (1) + (5) -159.019 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds