Wall clock time and date at job start Thu Apr 9 2020 11:59:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31451 * 1 3 3 Si 1.86800 * 119.99528 * 2 1 4 4 H 1.48500 * 109.47517 * 269.99840 * 3 2 1 5 5 H 1.48504 * 109.47269 * 30.00165 * 3 2 1 6 6 H 1.48502 * 109.46736 * 150.00067 * 3 2 1 7 7 C 1.38762 * 120.00295 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99707 * 179.72408 * 7 2 1 9 9 O 1.34894 * 119.99998 * 359.97438 * 7 2 1 10 10 C 1.34787 * 116.99993 * 179.73031 * 9 7 2 11 11 O 1.21550 * 120.00128 * 359.97438 * 10 9 7 12 12 C 1.47253 * 119.99976 * 180.02562 * 10 9 7 13 13 C 1.41353 * 126.43077 * 359.68670 * 12 10 9 14 14 N 1.30427 * 108.01806 * 179.87593 * 13 12 10 15 15 N 1.39924 * 108.92659 * 0.38699 * 14 13 12 16 16 C 1.46500 * 125.74151 * 179.71532 * 15 14 13 17 17 C 1.53002 * 109.47316 * 305.03701 * 16 15 14 18 18 F 1.39901 * 109.47140 * 180.02562 * 17 16 15 19 19 C 1.34240 * 108.51813 * 359.74576 * 15 14 13 20 20 H 0.96995 * 120.00343 * 0.02562 * 1 2 3 21 21 H 1.07997 * 125.99352 * 0.03878 * 13 12 10 22 22 H 1.09001 * 109.47685 * 65.04019 * 16 15 14 23 23 H 1.09007 * 109.47279 * 185.03749 * 16 15 14 24 24 H 1.08996 * 109.47433 * 300.00584 * 17 16 15 25 25 H 1.08999 * 109.46525 * 60.00294 * 17 16 15 26 26 H 1.08000 * 126.30197 * 180.02562 * 19 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3145 0.0000 0.0000 3 14 2.2484 1.6178 0.0000 4 1 2.4959 2.0466 -1.4000 5 1 1.4458 2.6527 0.7001 6 1 3.5459 1.4403 0.7000 7 6 2.0084 -1.2017 -0.0005 8 1 3.0883 -1.2016 -0.0050 9 8 1.3340 -2.3699 -0.0005 10 6 2.0681 -3.5003 -0.0067 11 8 3.2819 -3.4366 -0.0125 12 6 1.3997 -4.8124 -0.0077 13 6 0.0053 -5.0441 0.0036 14 7 -0.1894 -6.3337 -0.0042 15 7 1.0516 -6.9800 -0.0116 16 6 1.2612 -8.4300 -0.0156 17 6 0.5205 -9.0557 1.1679 18 9 0.7212 -10.4402 1.1644 19 6 2.0177 -6.0480 -0.0138 20 1 -0.4850 0.8400 -0.0004 21 1 -0.7640 -4.2862 0.0139 22 1 0.8795 -8.8498 -0.9462 23 1 2.3269 -8.6432 0.0689 24 1 0.9022 -8.6359 2.0985 25 1 -0.5451 -8.8425 1.0832 26 1 3.0821 -6.2305 -0.0197 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000808571736.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 11:59:44 Heat of formation + Delta-G solvation = -53.474832 kcal Electronic energy + Delta-G solvation = -14891.357766 eV Core-core repulsion = 11886.917312 eV Total energy + Delta-G solvation = -3004.440455 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 228.070 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -48.01064 -41.05176 -38.57794 -35.06188 -34.18225 -32.09447 -30.21339 -29.13147 -25.50978 -23.91902 -22.54980 -20.57948 -19.63367 -17.77733 -17.55397 -16.67543 -16.24185 -15.65689 -15.29242 -14.72687 -14.42678 -14.33673 -14.06633 -13.74342 -13.08350 -12.57116 -12.37982 -11.78216 -11.57525 -11.27235 -11.18930 -10.71177 -10.44057 -10.39686 -9.76513 -9.39844 -9.03916 -8.55863 -8.39231 -6.38952 -4.03482 1.76849 2.32315 2.58072 3.19298 3.21362 3.27597 3.92971 4.04183 4.18148 4.31037 4.62804 4.66556 4.80623 4.95987 5.08469 5.20384 5.37923 5.49850 5.73083 5.85093 6.68260 6.92319 7.01176 7.43420 7.75454 7.98532 8.76024 9.10251 9.91487 10.79381 Molecular weight = 228.07amu Principal moments of inertia in cm(-1) A = 0.077141 B = 0.005014 C = 0.004789 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 362.884360 B = 5582.770653 C = 5844.794228 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.864 5.864 2 C 0.041 3.959 3 Si 0.944 3.056 4 H -0.274 1.274 5 H -0.278 1.278 6 H -0.267 1.267 7 C -0.376 4.376 8 H 0.096 0.904 9 O -0.208 6.208 10 C 0.474 3.526 11 O -0.564 6.564 12 C -0.236 4.236 13 C 0.104 3.896 14 N -0.312 5.312 15 N -0.375 5.375 16 C 0.108 3.892 17 C 0.052 3.948 18 F -0.210 7.210 19 C 0.111 3.889 20 H 0.269 0.731 21 H 0.200 0.800 22 H 0.097 0.903 23 H 0.108 0.892 24 H 0.082 0.918 25 H 0.092 0.908 26 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.470 -13.858 0.852 13.892 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.501 5.501 2 C -0.163 4.163 3 Si 0.768 3.232 4 H -0.199 1.199 5 H -0.204 1.204 6 H -0.191 1.191 7 C -0.452 4.452 8 H 0.114 0.886 9 O -0.115 6.115 10 C 0.321 3.679 11 O -0.462 6.462 12 C -0.249 4.249 13 C -0.083 4.083 14 N -0.132 5.132 15 N -0.156 5.156 16 C -0.015 4.015 17 C -0.004 4.004 18 F -0.191 7.191 19 C -0.038 4.038 20 H 0.079 0.921 21 H 0.217 0.783 22 H 0.115 0.885 23 H 0.126 0.874 24 H 0.101 0.899 25 H 0.111 0.889 26 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges -0.262 -14.778 0.852 14.804 hybrid contribution 1.064 1.381 -0.049 1.744 sum 0.803 -13.397 0.802 13.444 Atomic orbital electron populations 1.69988 1.05965 1.27669 1.46502 1.25327 0.95829 0.98804 0.96369 0.85671 0.79037 0.79772 0.78695 1.19925 1.20370 1.19112 1.21239 0.92427 0.79775 1.51781 0.88644 1.83910 1.38904 1.13043 1.75645 1.19712 0.85210 0.84462 0.78496 1.90624 1.15138 1.88035 1.52430 1.19686 0.93276 0.91996 1.19934 1.24365 0.96388 0.92897 0.94655 1.77101 1.01798 1.07641 1.26612 1.48104 1.04593 1.05520 1.57369 1.22167 1.02839 0.75850 1.00612 1.22192 1.03194 0.75649 0.99355 1.92785 1.96811 1.31782 1.97770 1.22830 0.95563 0.87686 0.97697 0.92088 0.78295 0.88479 0.87394 0.89943 0.88928 0.79645 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.11 13.67 55.48 0.76 -24.35 15 2 C 0.04 1.14 5.49 -17.52 -0.10 1.04 15 3 Si 0.94 21.23 29.55 -169.99 -5.02 16.21 15 4 H -0.27 -5.99 7.11 56.52 0.40 -5.59 15 5 H -0.28 -6.03 7.11 56.52 0.40 -5.63 15 6 H -0.27 -5.90 7.11 56.52 0.40 -5.50 15 7 C -0.38 -11.11 9.65 30.93 0.30 -10.81 15 8 H 0.10 2.83 6.86 -52.49 -0.36 2.47 15 9 O -0.21 -5.98 9.59 -21.91 -0.21 -6.19 15 10 C 0.47 12.02 7.89 34.39 0.27 12.29 15 11 O -0.56 -15.31 16.15 -19.30 -0.31 -15.62 15 12 C -0.24 -4.72 6.13 -105.08 -0.64 -5.36 15 13 C 0.10 1.89 11.87 -16.96 -0.20 1.69 15 14 N -0.31 -5.03 12.33 30.87 0.38 -4.65 15 15 N -0.37 -5.12 3.65 -60.78 -0.22 -5.34 15 16 C 0.11 0.98 6.94 -4.04 -0.03 0.95 15 17 C 0.05 0.46 7.73 37.16 0.29 0.75 15 18 F -0.21 -2.09 17.36 2.25 0.04 -2.05 15 19 C 0.11 1.73 11.25 -16.53 -0.19 1.54 15 20 H 0.27 7.17 8.31 -40.82 -0.34 6.83 15 21 H 0.20 3.47 8.06 -52.49 -0.42 3.05 15 22 H 0.10 0.79 8.14 -51.93 -0.42 0.37 15 23 H 0.11 0.71 8.06 -51.92 -0.42 0.29 15 24 H 0.08 0.70 8.14 -51.93 -0.42 0.28 15 25 H 0.09 0.86 8.14 -51.93 -0.42 0.44 15 26 H 0.19 2.39 8.06 -52.49 -0.42 1.97 15 LS Contribution 254.34 15.07 3.83 3.83 Total: -1.00 -34.02 254.34 -3.08 -37.10 By element: Atomic # 1 Polarization: 1.02 SS G_CDS: -2.03 Total: -1.01 kcal Atomic # 6 Polarization: 2.38 SS G_CDS: -0.30 Total: 2.08 kcal Atomic # 7 Polarization: -35.26 SS G_CDS: 0.92 Total: -34.34 kcal Atomic # 8 Polarization: -21.29 SS G_CDS: -0.52 Total: -21.81 kcal Atomic # 9 Polarization: -2.09 SS G_CDS: 0.04 Total: -2.05 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Total LS contribution 3.83 Total: 3.83 kcal Total: -34.02 -3.08 -37.10 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000808571736.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.376 kcal (2) G-P(sol) polarization free energy of solvation -34.018 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.394 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.099 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.475 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds