Wall clock time and date at job start Thu Apr 9 2020 11:59:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86800 * 119.99708 * 2 1 4 4 H 1.48507 * 109.46974 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.47345 * 299.99660 * 3 2 1 6 6 H 1.48497 * 109.47726 * 59.99795 * 3 2 1 7 7 C 1.37878 * 120.00347 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99793 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99530 * 0.02562 * 7 2 1 10 10 C 1.53005 * 109.46932 * 180.02562 * 9 7 2 11 11 C 1.50698 * 109.47346 * 179.97438 * 10 9 7 12 12 O 1.20830 * 119.99453 * 359.97438 * 11 10 9 13 13 O 1.34221 * 120.00289 * 179.97438 * 11 10 9 14 14 C 1.45191 * 117.00435 * 179.97438 * 13 11 10 15 15 C 1.53001 * 109.47648 * 180.02562 * 14 13 11 16 16 H 1.09002 * 110.80191 * 305.70223 * 15 14 13 17 17 C 1.54817 * 110.90970 * 182.07281 * 15 14 13 18 18 C 1.54100 * 104.18606 * 220.88597 * 17 15 14 19 19 O 1.43746 * 107.29659 * 357.97343 * 18 17 15 20 20 C 1.44478 * 106.98554 * 26.51171 * 19 18 17 21 21 H 0.97004 * 120.00196 * 0.02562 * 1 2 3 22 22 H 1.08995 * 109.47443 * 59.99578 * 9 7 2 23 23 H 1.09000 * 109.47073 * 299.98973 * 9 7 2 24 24 H 1.09004 * 109.47267 * 59.99326 * 10 9 7 25 25 H 1.09000 * 109.46401 * 299.99382 * 10 9 7 26 26 H 1.09000 * 109.47273 * 60.00102 * 14 13 11 27 27 H 1.09003 * 109.47390 * 300.00444 * 14 13 11 28 28 H 1.08991 * 110.48506 * 339.56191 * 17 15 14 29 29 H 1.08995 * 110.48134 * 102.07810 * 17 15 14 30 30 H 1.09002 * 109.87699 * 117.39650 * 18 17 15 31 31 H 1.08999 * 109.87889 * 238.54603 * 18 17 15 32 32 H 1.08997 * 110.65764 * 201.45460 * 20 19 18 33 33 H 1.08997 * 110.61802 * 78.42806 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8903 2.3965 -1.2126 6 1 1.8903 2.3966 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1939 0.0010 9 6 1.2510 -2.4991 0.0005 10 6 2.2453 -3.6621 0.0018 11 6 1.4919 -4.9672 0.0025 12 8 0.2836 -4.9671 0.0024 13 8 2.1630 -6.1296 0.0031 14 6 1.3723 -7.3473 0.0043 15 6 2.3043 -8.5607 0.0055 16 1 3.0117 -8.5063 -0.8220 17 6 1.4947 -9.8793 -0.0456 18 6 2.2313 -10.8129 0.9345 19 8 3.3693 -10.0928 1.4372 20 6 3.0465 -8.6866 1.3604 21 1 -0.4850 0.8401 -0.0004 22 1 0.6247 -2.5570 -0.8896 23 1 0.6242 -2.5567 0.8904 24 1 2.8714 -3.6039 0.8922 25 1 2.8725 -3.6046 -0.8878 26 1 0.7432 -7.3729 -0.8855 27 1 0.7437 -7.3716 0.8944 28 1 0.4700 -9.7108 0.2853 29 1 1.5060 -10.2950 -1.0531 30 1 1.5698 -11.0822 1.7579 31 1 2.5619 -11.7112 0.4130 32 1 3.9543 -8.0832 1.3583 33 1 2.3939 -8.3971 2.1839 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000812614235.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 11:59:46 Heat of formation + Delta-G solvation = -153.649292 kcal Electronic energy + Delta-G solvation = -15432.826367 eV Core-core repulsion = 12651.042671 eV Total energy + Delta-G solvation = -2781.783697 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 228.119 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.18889 -39.35120 -36.24862 -33.60689 -33.16911 -31.15537 -29.80447 -26.70675 -25.39137 -22.94155 -22.02398 -20.82412 -19.78448 -17.45428 -16.91587 -16.43975 -16.17607 -15.96540 -15.25480 -14.92886 -14.46992 -14.15139 -13.48541 -13.10172 -12.54309 -12.33565 -12.11804 -12.02661 -11.72478 -11.28266 -11.13435 -10.98749 -10.95564 -10.63315 -10.36280 -10.07062 -9.95200 -9.91669 -9.57294 -9.17937 -8.39670 -6.03183 -4.08102 2.79167 2.98645 3.29937 3.37431 3.41098 3.72052 4.24521 4.42428 4.46942 4.62725 4.80769 4.97199 5.05724 5.30193 5.32430 5.34697 5.42834 5.49701 5.55032 5.62279 5.74311 5.91412 6.10023 6.17865 6.59224 6.62061 6.90410 7.64898 7.71170 7.96206 8.22946 8.38540 8.99276 9.56205 11.07867 Molecular weight = 228.12amu Principal moments of inertia in cm(-1) A = 0.074736 B = 0.004103 C = 0.003961 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 374.560208 B = 6822.644672 C = 7066.608984 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.058 3.942 3 Si 0.896 3.104 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.283 1.283 7 C -0.528 4.528 8 H 0.060 0.940 9 C 0.032 3.968 10 C -0.103 4.103 11 C 0.457 3.543 12 O -0.506 6.506 13 O -0.366 6.366 14 C 0.074 3.926 15 C -0.121 4.121 16 H 0.098 0.902 17 C -0.150 4.150 18 C 0.048 3.952 19 O -0.380 6.380 20 C 0.053 3.947 21 H 0.261 0.739 22 H 0.026 0.974 23 H 0.026 0.974 24 H 0.093 0.907 25 H 0.093 0.907 26 H 0.071 0.929 27 H 0.069 0.931 28 H 0.080 0.920 29 H 0.083 0.917 30 H 0.059 0.941 31 H 0.084 0.916 32 H 0.101 0.899 33 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.586 -18.557 0.400 19.120 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.144 4.144 3 Si 0.723 3.277 4 H -0.196 1.196 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.566 4.566 8 H 0.078 0.922 9 C -0.005 4.005 10 C -0.141 4.141 11 C 0.300 3.700 12 O -0.393 6.393 13 O -0.284 6.284 14 C -0.001 4.001 15 C -0.140 4.140 16 H 0.116 0.884 17 C -0.188 4.188 18 C -0.029 4.029 19 O -0.299 6.299 20 C -0.023 4.023 21 H 0.071 0.929 22 H 0.044 0.956 23 H 0.044 0.956 24 H 0.111 0.889 25 H 0.111 0.889 26 H 0.090 0.910 27 H 0.088 0.912 28 H 0.099 0.901 29 H 0.101 0.899 30 H 0.077 0.923 31 H 0.102 0.898 32 H 0.119 0.881 33 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 4.241 -18.569 0.482 19.053 hybrid contribution -0.062 0.932 -0.131 0.943 sum 4.179 -17.637 0.351 18.129 Atomic orbital electron populations 1.70002 1.06111 1.26670 1.50017 1.25026 0.94858 0.99373 0.95103 0.86483 0.80035 0.83523 0.77624 1.19625 1.20961 1.20960 1.21195 0.93125 0.90618 1.51696 0.92222 1.19029 0.93249 0.89335 0.98892 1.21771 1.00672 0.87599 1.04038 1.24792 0.87942 0.85654 0.71575 1.90638 1.15932 1.87688 1.44997 1.86550 1.42078 1.14917 1.84892 1.22845 0.92991 0.81495 1.02732 1.22755 0.98076 0.92898 1.00272 0.88389 1.22935 1.00179 0.94451 1.01231 1.23137 0.88140 0.95540 0.96101 1.88894 1.37951 1.17800 1.85265 1.23671 1.00799 0.82433 0.95412 0.92891 0.95594 0.95594 0.88909 0.88920 0.91049 0.91231 0.90144 0.89864 0.92271 0.89777 0.88055 0.91843 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.95 13.29 55.43 0.74 -26.21 16 2 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 3 Si 0.90 21.37 29.54 -169.99 -5.02 16.34 16 4 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 5 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 6 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 7 C -0.53 -14.72 9.11 -34.44 -0.31 -15.03 16 8 H 0.06 1.57 7.74 -52.49 -0.41 1.16 16 9 C 0.03 0.84 4.26 -27.88 -0.12 0.72 16 10 C -0.10 -2.09 5.75 -27.88 -0.16 -2.25 16 11 C 0.46 8.88 7.96 36.00 0.29 9.17 16 12 O -0.51 -11.43 15.73 -18.75 -0.30 -11.73 16 13 O -0.37 -5.83 10.14 -39.23 -0.40 -6.23 16 14 C 0.07 0.95 4.79 37.16 0.18 1.13 16 15 C -0.12 -1.24 3.40 -88.61 -0.30 -1.54 16 16 H 0.10 0.99 8.14 -51.93 -0.42 0.57 16 17 C -0.15 -1.21 6.60 -25.20 -0.17 -1.37 16 18 C 0.05 0.40 7.70 37.73 0.29 0.69 16 19 O -0.38 -4.37 11.52 -35.23 -0.41 -4.77 16 20 C 0.05 0.57 7.10 38.21 0.27 0.84 16 21 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 22 H 0.03 0.74 8.10 -51.93 -0.42 0.32 16 23 H 0.03 0.74 8.10 -51.93 -0.42 0.32 16 24 H 0.09 1.72 8.14 -51.93 -0.42 1.29 16 25 H 0.09 1.72 8.14 -51.93 -0.42 1.30 16 26 H 0.07 0.91 8.13 -51.93 -0.42 0.49 16 27 H 0.07 0.89 8.04 -51.93 -0.42 0.48 16 28 H 0.08 0.60 7.86 -51.93 -0.41 0.19 16 29 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.10 1.06 8.14 -51.93 -0.42 0.64 16 33 H 0.06 0.66 7.98 -51.93 -0.41 0.25 16 LS Contribution 284.91 15.07 4.29 4.29 Total: -1.00 -32.24 284.91 -6.22 -38.47 By element: Atomic # 1 Polarization: 0.92 SS G_CDS: -5.00 Total: -4.09 kcal Atomic # 6 Polarization: -5.94 SS G_CDS: -0.13 Total: -6.07 kcal Atomic # 7 Polarization: -26.95 SS G_CDS: 0.74 Total: -26.21 kcal Atomic # 8 Polarization: -21.63 SS G_CDS: -1.10 Total: -22.73 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.34 kcal Total LS contribution 4.29 Total: 4.29 kcal Total: -32.24 -6.22 -38.47 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812614235.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -115.183 kcal (2) G-P(sol) polarization free energy of solvation -32.241 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.425 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.225 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.466 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.649 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds