Wall clock time and date at job start Thu Apr 9 2020 11:59:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86798 * 119.99683 * 2 1 4 4 H 1.48501 * 109.47152 * 269.99496 * 3 2 1 5 5 H 1.48501 * 109.47300 * 29.99914 * 3 2 1 6 6 H 1.48503 * 109.47104 * 149.99709 * 3 2 1 7 7 C 1.37870 * 120.00206 * 179.97438 * 2 1 3 8 8 H 1.08008 * 120.00118 * 0.02562 * 7 2 1 9 9 C 1.50699 * 119.99998 * 180.02562 * 7 2 1 10 10 C 1.53005 * 109.47400 * 180.02562 * 9 7 2 11 11 C 1.50699 * 109.47400 * 180.02562 * 10 9 7 12 12 O 1.20827 * 119.99590 * 359.97438 * 11 10 9 13 13 O 1.34222 * 120.00021 * 179.97438 * 11 10 9 14 14 C 1.45200 * 117.00290 * 180.02562 * 13 11 10 15 15 C 1.52994 * 109.47581 * 179.97438 * 14 13 11 16 16 H 1.09005 * 110.55244 * 56.42404 * 15 14 13 17 17 C 1.54994 * 110.62185 * 179.47387 * 15 14 13 18 18 C 1.54807 * 102.09494 * 155.52387 * 17 15 14 19 19 C 1.54106 * 104.18688 * 339.12124 * 18 17 15 20 20 O 1.43739 * 107.29313 * 357.97161 * 19 18 17 21 21 H 0.97002 * 120.00888 * 0.02562 * 1 2 3 22 22 H 1.08991 * 109.47301 * 60.00418 * 9 7 2 23 23 H 1.09006 * 109.47132 * 300.00270 * 9 7 2 24 24 H 1.09001 * 109.47012 * 59.99680 * 10 9 7 25 25 H 1.09006 * 109.46742 * 299.99950 * 10 9 7 26 26 H 1.08999 * 109.47194 * 59.99508 * 14 13 11 27 27 H 1.09001 * 109.46777 * 300.00480 * 14 13 11 28 28 H 1.09005 * 110.90701 * 37.32905 * 17 15 14 29 29 H 1.09000 * 110.91134 * 273.72820 * 17 15 14 30 30 H 1.08997 * 110.48888 * 220.44580 * 18 17 15 31 31 H 1.09000 * 110.48626 * 97.79808 * 18 17 15 32 32 H 1.09004 * 109.87710 * 117.39475 * 19 18 17 33 33 H 1.08997 * 109.87565 * 238.54037 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4464 2.6527 0.7000 6 1 3.5466 1.4403 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1939 0.0011 10 6 4.0216 -2.6364 0.0010 11 6 5.5286 -2.6364 0.0022 12 8 6.1327 -1.5899 0.0026 13 8 6.1998 -3.7987 0.0028 14 6 7.6498 -3.7228 0.0046 15 6 8.2347 -5.1365 0.0057 16 1 7.8604 -5.7061 -0.8449 17 6 9.7838 -5.0864 -0.0057 18 6 10.1571 -6.4505 0.6239 19 6 8.8898 -6.8706 1.3936 20 8 7.9287 -5.8123 1.2443 21 1 -0.4851 0.8400 -0.0004 22 1 3.8745 -0.6800 0.8911 23 1 3.8752 -0.6802 -0.8889 24 1 3.6586 -3.1501 -0.8892 25 1 3.6580 -3.1504 0.8908 26 1 7.9847 -3.1907 0.8950 27 1 7.9867 -3.1904 -0.8849 28 1 10.1508 -4.2622 0.6060 29 1 10.1631 -5.0115 -1.0249 30 1 10.9986 -6.3376 1.3073 31 1 10.3904 -7.1783 -0.1532 32 1 8.4914 -7.7949 0.9750 33 1 9.1262 -7.0108 2.4483 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000812615449.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 11:59:49 Heat of formation + Delta-G solvation = -148.372233 kcal Electronic energy + Delta-G solvation = -15488.282032 eV Core-core repulsion = 12706.727166 eV Total energy + Delta-G solvation = -2781.554866 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 228.119 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.19822 -39.38508 -36.18668 -33.59113 -32.47867 -31.54530 -30.93218 -26.89025 -25.48901 -22.29108 -21.54825 -21.46130 -19.71808 -17.52333 -17.16162 -16.66159 -16.22373 -16.06672 -15.42009 -14.93592 -14.10707 -13.94446 -13.62823 -13.18423 -12.63415 -12.42246 -12.11469 -12.07911 -11.73394 -11.62390 -11.39534 -11.02817 -10.99918 -10.45347 -10.28787 -10.12686 -9.89846 -9.88841 -9.66251 -9.23210 -8.53590 -6.05026 -4.04729 2.73404 2.97565 3.35895 3.42726 3.52364 3.56317 4.19705 4.43212 4.48293 4.56066 4.81255 4.86825 5.01073 5.20123 5.27830 5.29714 5.34974 5.43678 5.49076 5.54716 5.68802 5.77887 6.04422 6.07435 6.51917 6.65464 6.82939 7.26702 7.34360 7.73317 8.24887 8.49715 8.97588 9.56815 11.07623 Molecular weight = 228.12amu Principal moments of inertia in cm(-1) A = 0.068481 B = 0.004458 C = 0.004270 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 408.774562 B = 6279.847861 C = 6556.439234 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.070 3.930 3 Si 0.877 3.123 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.262 1.262 7 C -0.526 4.526 8 H 0.076 0.924 9 C -0.002 4.002 10 C -0.096 4.096 11 C 0.458 3.542 12 O -0.514 6.514 13 O -0.356 6.356 14 C 0.070 3.930 15 C 0.078 3.922 16 H 0.082 0.918 17 C -0.148 4.148 18 C -0.155 4.155 19 C 0.044 3.956 20 O -0.364 6.364 21 H 0.264 0.736 22 H 0.026 0.974 23 H 0.021 0.979 24 H 0.098 0.902 25 H 0.099 0.901 26 H 0.075 0.925 27 H 0.082 0.918 28 H 0.082 0.918 29 H 0.085 0.915 30 H 0.079 0.921 31 H 0.077 0.923 32 H 0.060 0.940 33 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.261 -12.641 -0.147 23.881 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.131 4.131 3 Si 0.704 3.296 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.186 1.186 7 C -0.564 4.564 8 H 0.094 0.906 9 C -0.040 4.040 10 C -0.133 4.133 11 C 0.302 3.698 12 O -0.402 6.402 13 O -0.274 6.274 14 C -0.004 4.004 15 C 0.021 3.979 16 H 0.100 0.900 17 C -0.186 4.186 18 C -0.192 4.192 19 C -0.033 4.033 20 O -0.283 6.283 21 H 0.074 0.926 22 H 0.044 0.956 23 H 0.039 0.961 24 H 0.117 0.883 25 H 0.118 0.882 26 H 0.093 0.907 27 H 0.100 0.900 28 H 0.100 0.900 29 H 0.104 0.896 30 H 0.097 0.903 31 H 0.095 0.905 32 H 0.078 0.922 33 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 20.144 -12.165 0.007 23.533 hybrid contribution 0.713 0.869 -0.158 1.135 sum 20.857 -11.296 -0.151 23.720 Atomic orbital electron populations 1.69903 1.06271 1.27051 1.50729 1.24953 0.94723 0.99193 0.94256 0.86800 0.80596 0.83419 0.78756 1.20180 1.21320 1.18598 1.21044 0.88869 0.94813 1.51697 0.90626 1.19484 0.96890 0.89695 0.97900 1.21540 0.83417 1.03443 1.04906 1.24748 0.92785 0.80904 0.71320 1.90611 1.70729 1.33145 1.45706 1.86598 1.20296 1.35962 1.84504 1.22957 0.78680 0.95608 1.03147 1.23196 0.93489 0.92511 0.88743 0.89993 1.23108 0.94618 0.98384 1.02487 1.22933 0.98948 0.97037 1.00329 1.23171 0.88095 0.91064 1.01012 1.89012 1.52952 1.46645 1.39732 0.92616 0.95596 0.96075 0.88332 0.88233 0.90653 0.89975 0.89963 0.89608 0.90265 0.90469 0.92211 0.89774 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.90 13.96 55.43 0.77 -27.12 16 2 C 0.07 2.08 5.47 -17.82 -0.10 1.98 16 3 Si 0.88 22.41 27.47 -169.99 -4.67 17.74 16 4 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 5 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 6 H -0.26 -6.63 6.54 56.52 0.37 -6.26 16 7 C -0.53 -15.09 9.66 -34.44 -0.33 -15.42 16 8 H 0.08 2.26 7.99 -52.48 -0.42 1.84 16 9 C 0.00 -0.05 3.33 -27.88 -0.09 -0.15 16 10 C -0.10 -1.94 5.75 -27.88 -0.16 -2.10 16 11 C 0.46 8.94 7.96 36.01 0.29 9.23 16 12 O -0.51 -11.28 15.73 -18.75 -0.29 -11.58 16 13 O -0.36 -6.06 10.22 -40.76 -0.42 -6.48 16 14 C 0.07 0.95 5.21 37.15 0.19 1.15 16 15 C 0.08 0.86 3.64 -25.68 -0.09 0.77 16 16 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 17 C -0.15 -1.14 6.59 -24.73 -0.16 -1.31 16 18 C -0.15 -1.02 7.01 -25.20 -0.18 -1.20 16 19 C 0.04 0.38 7.70 37.74 0.29 0.67 16 20 O -0.36 -4.71 11.22 -35.57 -0.40 -5.11 16 21 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 22 H 0.03 0.67 7.16 -51.93 -0.37 0.30 16 23 H 0.02 0.53 7.53 -51.93 -0.39 0.14 16 24 H 0.10 1.84 8.14 -51.93 -0.42 1.42 16 25 H 0.10 1.90 8.14 -51.93 -0.42 1.48 16 26 H 0.08 1.05 8.13 -51.93 -0.42 0.63 16 27 H 0.08 1.00 8.13 -51.93 -0.42 0.58 16 28 H 0.08 0.63 8.06 -51.93 -0.42 0.21 16 29 H 0.09 0.52 8.14 -51.93 -0.42 0.09 16 30 H 0.08 0.44 8.14 -51.93 -0.42 0.01 16 31 H 0.08 0.41 8.14 -51.93 -0.42 -0.02 16 32 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 LS Contribution 282.11 15.07 4.25 4.25 Total: -1.00 -33.46 282.11 -6.09 -39.55 By element: Atomic # 1 Polarization: 0.11 SS G_CDS: -4.99 Total: -4.88 kcal Atomic # 6 Polarization: -6.03 SS G_CDS: -0.35 Total: -6.37 kcal Atomic # 7 Polarization: -27.90 SS G_CDS: 0.77 Total: -27.12 kcal Atomic # 8 Polarization: -22.05 SS G_CDS: -1.11 Total: -23.16 kcal Atomic # 14 Polarization: 22.41 SS G_CDS: -4.67 Total: 17.74 kcal Total LS contribution 4.25 Total: 4.25 kcal Total: -33.46 -6.09 -39.55 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812615449.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -108.818 kcal (2) G-P(sol) polarization free energy of solvation -33.460 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.278 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.094 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.555 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.372 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds