Wall clock time and date at job start Thu Apr 9 2020 11:59:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86798 * 119.99784 * 2 1 4 4 H 1.48506 * 109.47297 * 269.99763 * 3 2 1 5 5 H 1.48503 * 109.47261 * 149.99944 * 3 2 1 6 6 H 1.48500 * 109.47454 * 29.99937 * 3 2 1 7 7 C 1.37881 * 120.00186 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99307 * 359.97438 * 7 2 1 9 9 C 1.50699 * 119.99889 * 180.02562 * 7 2 1 10 10 C 1.52998 * 109.46700 * 180.02562 * 9 7 2 11 11 C 1.50699 * 109.47065 * 179.97438 * 10 9 7 12 12 O 1.20831 * 120.00061 * 359.97438 * 11 10 9 13 13 O 1.34226 * 120.00296 * 179.97438 * 11 10 9 14 14 C 1.45197 * 117.00166 * 180.02562 * 13 11 10 15 15 C 1.53003 * 109.47474 * 179.97438 * 14 13 11 16 16 H 1.09003 * 110.33048 * 307.25467 * 15 14 13 17 17 C 1.54476 * 110.37739 * 184.99639 * 15 14 13 18 18 C 1.54506 * 104.06668 * 217.19094 * 17 15 14 19 19 C 1.54477 * 104.06067 * 359.97438 * 18 17 15 20 20 O 1.44422 * 104.80635 * 23.97880 * 19 18 17 21 21 H 0.96998 * 120.00124 * 0.02562 * 1 2 3 22 22 H 1.09004 * 109.47017 * 299.99842 * 9 7 2 23 23 H 1.08997 * 109.47037 * 59.99777 * 9 7 2 24 24 H 1.09004 * 109.47139 * 299.99623 * 10 9 7 25 25 H 1.08997 * 109.47675 * 60.00023 * 10 9 7 26 26 H 1.09003 * 109.46936 * 299.99556 * 14 13 11 27 27 H 1.08999 * 109.47549 * 59.99846 * 14 13 11 28 28 H 1.09000 * 110.50736 * 335.83809 * 17 15 14 29 29 H 1.08998 * 110.50794 * 98.54486 * 17 15 14 30 30 H 1.08999 * 110.51178 * 118.64291 * 18 17 15 31 31 H 1.09000 * 110.51201 * 241.22372 * 18 17 15 32 32 H 1.09001 * 110.37517 * 142.81103 * 19 18 17 33 33 H 1.08994 * 110.37483 * 265.03612 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 3.5467 1.4403 0.7001 6 1 1.4466 2.6527 0.7000 7 6 2.0046 -1.1941 0.0005 8 1 1.4646 -2.1293 0.0014 9 6 3.5116 -1.1940 0.0011 10 6 4.0216 -2.6365 0.0010 11 6 5.5286 -2.6365 0.0009 12 8 6.1328 -1.5901 0.0005 13 8 6.1998 -3.7989 0.0014 14 6 7.6497 -3.7229 0.0019 15 6 8.2346 -5.1367 0.0029 16 1 7.8074 -5.7227 0.8167 17 6 9.7732 -5.0822 0.1296 18 6 10.2657 -6.2318 -0.7776 19 6 8.9663 -6.8454 -1.3446 20 8 7.9912 -5.7830 -1.2653 21 1 -0.4850 0.8400 -0.0004 22 1 3.8753 -0.6803 -0.8889 23 1 3.8746 -0.6799 0.8911 24 1 3.6579 -3.1505 0.8908 25 1 3.6587 -3.1502 -0.8892 26 1 7.9860 -3.1909 -0.8882 27 1 7.9854 -3.1906 0.8918 28 1 10.1521 -4.1246 -0.2277 29 1 10.0777 -5.2532 1.1621 30 1 10.8880 -5.8427 -1.5834 31 1 10.8156 -6.9701 -0.1940 32 1 9.1114 -7.1507 -2.3808 33 1 8.6529 -7.6962 -0.7396 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000812615450.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 11:59:51 Heat of formation + Delta-G solvation = -148.432930 kcal Electronic energy + Delta-G solvation = -15489.987644 eV Core-core repulsion = 12708.430146 eV Total energy + Delta-G solvation = -2781.557498 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 228.119 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.20546 -39.38419 -36.18749 -33.59260 -32.47231 -31.53876 -30.91440 -26.87098 -25.45291 -22.46522 -21.61344 -21.30307 -19.71920 -17.53886 -17.01457 -16.65127 -16.19944 -16.15820 -15.42646 -14.93985 -14.11001 -14.02721 -13.64611 -13.11892 -12.62811 -12.40950 -12.15035 -12.00239 -11.76918 -11.57386 -11.39997 -11.00183 -10.96707 -10.45573 -10.29089 -10.12788 -10.00692 -9.89818 -9.66440 -9.23408 -8.53616 -6.05189 -4.04857 2.73198 2.98228 3.36015 3.42700 3.52042 3.59351 4.23547 4.42711 4.48167 4.57450 4.79931 4.89591 5.03409 5.17583 5.28051 5.29552 5.34910 5.45858 5.49177 5.53979 5.66398 5.77819 6.04035 6.07335 6.51513 6.58443 6.82718 7.26763 7.33943 7.73161 8.24619 8.49567 8.97482 9.56654 11.07454 Molecular weight = 228.12amu Principal moments of inertia in cm(-1) A = 0.068348 B = 0.004456 C = 0.004273 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 409.572145 B = 6281.456962 C = 6551.011626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.070 3.930 3 Si 0.877 3.123 4 H -0.276 1.276 5 H -0.262 1.262 6 H -0.287 1.287 7 C -0.526 4.526 8 H 0.076 0.924 9 C -0.002 4.002 10 C -0.095 4.095 11 C 0.458 3.542 12 O -0.514 6.514 13 O -0.357 6.357 14 C 0.070 3.930 15 C 0.076 3.924 16 H 0.082 0.918 17 C -0.149 4.149 18 C -0.154 4.154 19 C 0.042 3.958 20 O -0.362 6.362 21 H 0.264 0.736 22 H 0.021 0.979 23 H 0.025 0.975 24 H 0.099 0.901 25 H 0.099 0.901 26 H 0.076 0.924 27 H 0.082 0.918 28 H 0.080 0.920 29 H 0.083 0.917 30 H 0.076 0.924 31 H 0.078 0.922 32 H 0.092 0.908 33 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.241 -12.680 0.244 23.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.131 4.131 3 Si 0.704 3.296 4 H -0.202 1.202 5 H -0.186 1.186 6 H -0.213 1.213 7 C -0.564 4.564 8 H 0.094 0.906 9 C -0.040 4.040 10 C -0.133 4.133 11 C 0.302 3.698 12 O -0.402 6.402 13 O -0.275 6.275 14 C -0.004 4.004 15 C 0.018 3.982 16 H 0.099 0.901 17 C -0.187 4.187 18 C -0.192 4.192 19 C -0.035 4.035 20 O -0.281 6.281 21 H 0.074 0.926 22 H 0.040 0.960 23 H 0.044 0.956 24 H 0.117 0.883 25 H 0.117 0.883 26 H 0.094 0.906 27 H 0.100 0.900 28 H 0.099 0.901 29 H 0.101 0.899 30 H 0.095 0.905 31 H 0.096 0.904 32 H 0.110 0.890 33 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 20.132 -12.194 0.088 23.537 hybrid contribution 0.702 0.898 0.122 1.146 sum 20.834 -11.297 0.210 23.700 Atomic orbital electron populations 1.69907 1.06269 1.27047 1.50726 1.24959 0.94725 0.99196 0.94253 0.86798 0.80558 0.83408 0.78789 1.20159 1.18617 1.21328 1.21044 0.88865 0.94812 1.51705 0.90626 1.19483 0.96893 0.89694 0.97904 1.21538 0.83410 1.03448 1.04903 1.24748 0.92781 0.80898 0.71323 1.90612 1.70724 1.33151 1.45687 1.86592 1.20356 1.36000 1.84520 1.22990 0.78616 0.95688 1.03139 1.23041 0.94067 0.93026 0.88018 0.90056 1.22918 0.94403 1.00203 1.01152 1.22936 0.98572 0.97967 0.99747 1.23419 0.87271 0.90809 1.02035 1.89257 1.55375 1.46729 1.36710 0.92617 0.96046 0.95619 0.88307 0.88258 0.90601 0.90017 0.90140 0.89875 0.90493 0.90355 0.88967 0.92098 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.89 13.96 55.43 0.77 -27.12 16 2 C 0.07 2.08 5.47 -17.82 -0.10 1.98 16 3 Si 0.88 22.41 27.47 -169.99 -4.67 17.74 16 4 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 5 H -0.26 -6.62 6.54 56.52 0.37 -6.25 16 6 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 7 C -0.53 -15.08 9.66 -34.44 -0.33 -15.42 16 8 H 0.08 2.26 7.99 -52.49 -0.42 1.84 16 9 C 0.00 -0.06 3.33 -27.88 -0.09 -0.15 16 10 C -0.10 -1.94 5.75 -27.88 -0.16 -2.10 16 11 C 0.46 8.95 7.96 36.00 0.29 9.24 16 12 O -0.51 -11.30 15.73 -18.75 -0.30 -11.59 16 13 O -0.36 -6.08 10.22 -39.99 -0.41 -6.48 16 14 C 0.07 0.95 5.07 37.16 0.19 1.14 16 15 C 0.08 0.84 3.58 -25.96 -0.09 0.75 16 16 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 17 C -0.15 -1.16 6.63 -25.17 -0.17 -1.33 16 18 C -0.15 -1.04 7.09 -25.17 -0.18 -1.22 16 19 C 0.04 0.35 7.63 37.93 0.29 0.64 16 20 O -0.36 -4.65 11.34 -35.23 -0.40 -5.05 16 21 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 22 H 0.02 0.54 7.53 -51.93 -0.39 0.15 16 23 H 0.03 0.66 7.16 -51.93 -0.37 0.28 16 24 H 0.10 1.85 8.14 -51.93 -0.42 1.42 16 25 H 0.10 1.90 8.14 -51.93 -0.42 1.47 16 26 H 0.08 1.07 8.13 -51.93 -0.42 0.65 16 27 H 0.08 1.01 8.13 -51.93 -0.42 0.58 16 28 H 0.08 0.62 7.87 -51.93 -0.41 0.21 16 29 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 30 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.09 0.67 8.14 -51.93 -0.42 0.24 16 33 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 LS Contribution 281.91 15.07 4.25 4.25 Total: -1.00 -33.45 281.91 -6.09 -39.54 By element: Atomic # 1 Polarization: 0.15 SS G_CDS: -4.98 Total: -4.83 kcal Atomic # 6 Polarization: -6.10 SS G_CDS: -0.36 Total: -6.46 kcal Atomic # 7 Polarization: -27.89 SS G_CDS: 0.77 Total: -27.12 kcal Atomic # 8 Polarization: -22.02 SS G_CDS: -1.10 Total: -23.12 kcal Atomic # 14 Polarization: 22.41 SS G_CDS: -4.67 Total: 17.74 kcal Total LS contribution 4.25 Total: 4.25 kcal Total: -33.45 -6.09 -39.54 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812615450.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -108.888 kcal (2) G-P(sol) polarization free energy of solvation -33.453 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.341 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.092 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.545 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.433 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds