Wall clock time and date at job start Thu Apr 9 2020 11:59:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86795 * 120.00168 * 2 1 4 4 H 1.48503 * 109.47294 * 270.00251 * 3 2 1 5 5 H 1.48499 * 109.47218 * 30.00111 * 3 2 1 6 6 H 1.48491 * 109.47227 * 150.00299 * 3 2 1 7 7 C 1.37880 * 119.99508 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99419 * 179.97438 * 7 2 1 9 9 C 1.50701 * 120.00289 * 0.02562 * 7 2 1 10 10 C 1.52996 * 109.46972 * 180.02562 * 9 7 2 11 11 C 1.50696 * 109.47298 * 179.97438 * 10 9 7 12 12 O 1.20833 * 119.99655 * 359.97438 * 11 10 9 13 13 O 1.34222 * 120.00432 * 180.27351 * 11 10 9 14 14 C 1.45201 * 117.00137 * 179.71953 * 13 11 10 15 15 H 1.08996 * 110.36141 * 332.33323 * 14 13 11 16 16 C 1.54476 * 110.40464 * 209.99785 * 14 13 11 17 17 C 1.54373 * 103.04443 * 241.58726 * 16 14 13 18 18 O 1.45949 * 105.06914 * 17.82043 * 17 16 14 19 19 C 1.34555 * 108.40338 * 327.55788 * 18 17 16 20 20 O 1.20823 * 125.94672 * 213.35860 * 19 18 17 21 21 H 0.96999 * 119.99800 * 0.02562 * 1 2 3 22 22 H 1.08994 * 109.47178 * 59.99827 * 9 7 2 23 23 H 1.09006 * 109.46629 * 299.99631 * 9 7 2 24 24 H 1.09000 * 109.47764 * 59.99413 * 10 9 7 25 25 H 1.09006 * 109.46938 * 299.99191 * 10 9 7 26 26 H 1.08998 * 110.70145 * 359.97438 * 16 14 13 27 27 H 1.08996 * 110.69621 * 123.19918 * 16 14 13 28 28 H 1.09002 * 110.31512 * 136.71906 * 17 16 14 29 29 H 1.09001 * 110.32170 * 258.91956 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5467 1.4401 0.6999 7 6 2.0044 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4992 -0.0017 10 6 2.2451 -3.6621 -0.0015 11 6 1.4916 -4.9672 -0.0020 12 8 0.2833 -4.9671 -0.0020 13 8 2.1627 -6.1296 0.0037 14 6 1.3718 -7.3473 0.0091 15 1 0.4061 -7.1702 0.4824 16 6 2.1298 -8.4786 0.7385 17 6 2.3093 -9.5446 -0.3634 18 8 2.0896 -8.8334 -1.6188 19 6 1.1841 -7.8616 -1.4037 20 8 0.3638 -7.4678 -2.1986 21 1 -0.4850 0.8401 -0.0004 22 1 0.6246 -2.5563 -0.8919 23 1 0.6239 -2.5575 0.8881 24 1 2.8712 -3.6048 0.8890 25 1 2.8724 -3.6040 -0.8911 26 1 3.0977 -8.1263 1.0951 27 1 1.5345 -8.8723 1.5623 28 1 3.3187 -9.9549 -0.3323 29 1 1.5729 -10.3395 -0.2447 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000812619174.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 11:59:55 Heat of formation + Delta-G solvation = -171.088733 kcal Electronic energy + Delta-G solvation = -15517.388927 eV Core-core repulsion = 12599.015905 eV Total energy + Delta-G solvation = -2918.373022 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 228.088 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.36944 -39.73630 -37.67925 -36.30607 -33.63609 -32.56819 -31.14212 -28.05839 -25.97319 -22.85494 -22.67840 -21.24261 -20.01306 -17.83765 -17.54843 -17.18564 -16.76867 -15.97574 -15.73800 -15.02414 -14.50851 -14.31603 -13.85246 -13.12124 -12.90009 -12.85761 -12.51150 -12.24785 -11.65881 -11.51660 -11.25873 -10.97365 -10.87809 -10.66075 -10.11802 -10.06714 -9.97391 -9.62616 -9.20844 -8.39442 -6.02993 -4.08351 1.54567 2.61941 2.72074 3.23812 3.31128 3.37379 3.40028 3.69880 3.92561 4.34879 4.42288 4.47239 4.89118 5.03240 5.18052 5.32442 5.34608 5.54789 6.04311 6.10679 6.32845 6.47391 6.78343 7.18971 7.63535 7.69772 7.95464 8.11231 8.32417 8.98438 9.55840 11.08003 Molecular weight = 228.09amu Principal moments of inertia in cm(-1) A = 0.062381 B = 0.004997 C = 0.004879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 448.744269 B = 5601.513474 C = 5737.540483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.059 3.941 3 Si 0.897 3.103 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.530 4.530 8 H 0.059 0.941 9 C 0.032 3.968 10 C -0.100 4.100 11 C 0.451 3.549 12 O -0.489 6.489 13 O -0.339 6.339 14 C 0.023 3.977 15 H 0.125 0.875 16 C -0.154 4.154 17 C 0.056 3.944 18 O -0.346 6.346 19 C 0.473 3.527 20 O -0.419 6.419 21 H 0.262 0.738 22 H 0.027 0.973 23 H 0.027 0.973 24 H 0.096 0.904 25 H 0.095 0.905 26 H 0.110 0.890 27 H 0.107 0.893 28 H 0.116 0.884 29 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.478 -18.486 3.175 19.844 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.143 4.143 3 Si 0.724 3.276 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.568 4.568 8 H 0.078 0.922 9 C -0.005 4.005 10 C -0.137 4.137 11 C 0.294 3.706 12 O -0.373 6.373 13 O -0.258 6.258 14 C -0.034 4.034 15 H 0.143 0.857 16 C -0.191 4.191 17 C -0.019 4.019 18 O -0.264 6.264 19 C 0.310 3.690 20 O -0.298 6.298 21 H 0.072 0.928 22 H 0.046 0.954 23 H 0.045 0.955 24 H 0.114 0.886 25 H 0.113 0.887 26 H 0.128 0.872 27 H 0.125 0.875 28 H 0.134 0.866 29 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 5.618 -18.247 2.587 19.267 hybrid contribution 0.268 0.856 0.111 0.904 sum 5.886 -17.391 2.698 18.558 Atomic orbital electron populations 1.69994 1.06107 1.26827 1.49740 1.25027 0.94870 0.99376 0.95061 0.86522 0.79719 0.83152 0.78166 1.20571 1.21170 1.19784 1.21131 0.93073 0.90546 1.52043 0.92248 1.19051 0.93228 0.89190 0.99063 1.21824 1.00743 0.86920 1.04239 1.25108 0.88361 0.85529 0.71585 1.90673 1.15635 1.86916 1.44090 1.86798 1.40337 1.13696 1.84940 1.23846 0.99111 0.85590 0.94896 0.85733 1.23059 1.04006 0.93533 0.98494 1.24068 1.04586 0.93843 0.79378 1.87330 1.56103 1.46895 1.36043 1.23467 0.77681 0.78794 0.89086 1.90768 1.28698 1.58349 1.52012 0.92794 0.95433 0.95474 0.88616 0.88694 0.87153 0.87472 0.86554 0.89386 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.09 13.29 55.43 0.74 -26.36 15 2 C 0.06 1.69 5.46 -17.82 -0.10 1.59 15 3 Si 0.90 21.47 29.54 -169.99 -5.02 16.45 15 4 H -0.28 -6.62 7.11 56.52 0.40 -6.22 15 5 H -0.29 -6.80 7.11 56.52 0.40 -6.39 15 6 H -0.27 -6.32 7.11 56.52 0.40 -5.92 15 7 C -0.53 -14.81 9.11 -34.44 -0.31 -15.13 15 8 H 0.06 1.56 7.74 -52.49 -0.41 1.15 15 9 C 0.03 0.84 4.26 -27.88 -0.12 0.72 15 10 C -0.10 -2.03 5.75 -27.89 -0.16 -2.19 15 11 C 0.45 8.94 7.96 36.00 0.29 9.22 15 12 O -0.49 -11.28 15.19 -18.76 -0.28 -11.57 15 13 O -0.34 -5.45 9.88 -39.24 -0.39 -5.84 15 14 C 0.02 0.31 3.39 -26.71 -0.09 0.22 15 15 H 0.13 1.70 7.14 -51.93 -0.37 1.33 15 16 C -0.15 -1.11 6.99 -25.24 -0.18 -1.29 15 17 C 0.06 0.36 7.84 37.88 0.30 0.66 15 18 O -0.35 -4.30 11.17 -39.71 -0.44 -4.74 15 19 C 0.47 7.24 8.19 36.41 0.30 7.54 15 20 O -0.42 -8.19 18.00 -18.32 -0.33 -8.52 15 21 H 0.26 7.51 8.31 -40.82 -0.34 7.17 15 22 H 0.03 0.80 8.10 -51.93 -0.42 0.38 15 23 H 0.03 0.77 8.10 -51.93 -0.42 0.35 15 24 H 0.10 1.73 8.14 -51.93 -0.42 1.30 15 25 H 0.09 1.79 8.14 -51.93 -0.42 1.37 15 26 H 0.11 0.72 8.01 -51.93 -0.42 0.31 15 27 H 0.11 0.49 8.14 -51.93 -0.42 0.06 15 28 H 0.12 0.45 8.14 -51.93 -0.42 0.03 15 29 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 15 LS Contribution 265.43 15.07 4.00 4.00 Total: -1.00 -35.26 265.43 -5.09 -40.35 By element: Atomic # 1 Polarization: -1.84 SS G_CDS: -3.28 Total: -5.12 kcal Atomic # 6 Polarization: 1.43 SS G_CDS: -0.08 Total: 1.35 kcal Atomic # 7 Polarization: -27.09 SS G_CDS: 0.74 Total: -26.36 kcal Atomic # 8 Polarization: -29.23 SS G_CDS: -1.45 Total: -30.68 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Total LS contribution 4.00 Total: 4.00 kcal Total: -35.26 -5.09 -40.35 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812619174.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -130.739 kcal (2) G-P(sol) polarization free energy of solvation -35.262 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -166.000 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.350 kcal (6) G-S(sol) free energy of system = (1) + (5) -171.089 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds