Wall clock time and date at job start Thu Apr 9 2020 12:00:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46509 * 109.47412 * 2 1 4 4 C 1.37092 * 119.99840 * 264.46633 * 3 2 1 5 5 H 1.08000 * 119.99980 * 146.15145 * 4 3 2 6 6 C 1.38951 * 120.00034 * 326.14368 * 4 3 2 7 7 N 1.31412 * 119.99943 * 337.76808 * 6 4 3 8 8 Si 1.86796 * 119.99977 * 157.76621 * 6 4 3 9 9 H 1.48499 * 109.47409 * 60.00431 * 8 6 4 10 10 H 1.48507 * 109.47358 * 180.02562 * 8 6 4 11 11 H 1.48500 * 109.47517 * 299.99973 * 8 6 4 12 12 C 1.34777 * 119.99950 * 84.45577 * 3 2 1 13 13 O 1.21293 * 119.99766 * 180.02562 * 12 3 2 14 14 C 1.50701 * 120.00057 * 0.02562 * 12 3 2 15 15 H 1.08999 * 115.56195 * 34.29873 * 14 12 3 16 16 C 1.53004 * 117.49458 * 248.62079 * 14 12 3 17 17 C 1.52997 * 117.49941 * 179.97438 * 14 12 3 18 18 H 1.08999 * 117.49685 * 359.97438 * 17 14 12 19 19 N 1.46500 * 117.49624 * 215.00175 * 17 14 12 20 20 O 1.21803 * 120.00023 * 119.99856 * 19 17 14 21 21 O 1.21798 * 119.99962 * 299.99054 * 19 17 14 22 22 H 1.08998 * 109.47167 * 300.00269 * 1 2 3 23 23 H 1.09002 * 109.46904 * 59.99884 * 1 2 3 24 24 H 1.08997 * 109.46944 * 179.97438 * 1 2 3 25 25 H 1.09005 * 109.47526 * 239.99799 * 2 1 3 26 26 H 1.08997 * 109.47121 * 119.99436 * 2 1 3 27 27 H 0.97001 * 119.99651 * 179.97438 * 7 6 4 28 28 H 1.09001 * 117.50081 * 359.97438 * 16 14 12 29 29 H 1.08999 * 117.49632 * 145.02664 * 16 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.3548 1.9893 -1.1817 5 1 2.1874 3.0484 -1.3109 6 6 2.9113 1.2430 -2.2133 7 7 3.5135 0.1050 -1.9502 8 14 2.8035 1.8574 -3.9740 9 1 3.4786 3.1758 -4.0805 10 1 3.4686 0.8857 -4.8790 11 1 1.3773 1.9988 -4.3626 12 6 2.1367 2.0542 1.1617 13 8 2.5407 3.1979 1.1617 14 6 1.7672 1.3856 2.4608 15 1 1.9745 0.3169 2.5154 16 6 0.5280 1.9032 3.1941 17 6 1.9243 2.2020 3.7452 18 1 2.2953 3.2226 3.6506 19 7 2.3420 1.4875 4.9540 20 8 3.3736 1.8010 5.5208 21 8 1.6578 0.5802 5.3922 22 1 -0.3633 0.5139 0.8899 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 -1.0276 -0.0005 25 1 1.8934 -0.5139 -0.8900 26 1 1.8933 -0.5137 0.8900 27 1 3.9016 -0.4161 -2.6703 28 1 -0.0196 2.7274 2.7371 29 1 -0.0796 1.1749 3.7313 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000840283944.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:00:27 Heat of formation + Delta-G solvation = -11.992800 kcal Electronic energy + Delta-G solvation = -16082.472471 eV Core-core repulsion = 13203.291117 eV Total energy + Delta-G solvation = -2879.181354 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 228.094 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -42.07397 -39.26489 -36.65470 -36.05647 -35.03483 -32.19948 -29.68586 -27.75326 -25.80076 -23.38649 -22.48656 -21.94083 -19.23109 -18.79795 -18.17871 -17.05952 -16.95569 -16.12584 -15.29317 -14.77767 -14.13063 -13.53305 -13.17173 -13.02666 -12.36702 -11.96975 -11.90773 -11.44537 -11.27403 -11.21888 -11.13494 -11.03487 -10.90005 -10.77314 -10.49652 -10.44324 -10.26111 -9.14462 -8.81830 -7.75810 -6.54683 -4.17167 0.68370 1.79848 2.91141 3.13565 3.15162 3.17332 3.68139 3.87434 4.10435 4.44407 4.53823 4.85138 4.90589 5.30712 5.38859 5.54565 5.71022 5.79879 6.04576 6.14316 6.35270 6.53706 6.70911 7.07276 7.39709 7.84129 7.97081 8.23741 8.90751 9.13584 9.68990 10.48701 Molecular weight = 228.09amu Principal moments of inertia in cm(-1) A = 0.043628 B = 0.007179 C = 0.006858 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 641.639737 B = 3899.133356 C = 4081.955387 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.090 3.910 3 N -0.418 5.418 4 C -0.315 4.315 5 H 0.097 0.903 6 C 0.039 3.961 7 N -0.863 5.863 8 Si 0.924 3.076 9 H -0.270 1.270 10 H -0.282 1.282 11 H -0.271 1.271 12 C 0.472 3.528 13 O -0.578 6.578 14 C -0.120 4.120 15 H 0.135 0.865 16 C -0.118 4.118 17 C -0.071 4.071 18 H 0.182 0.818 19 N 0.018 4.982 20 O -0.163 6.163 21 O -0.173 6.173 22 H 0.044 0.956 23 H 0.058 0.942 24 H 0.054 0.946 25 H 0.117 0.883 26 H 0.048 0.952 27 H 0.272 0.728 28 H 0.128 0.872 29 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.672 -1.517 4.605 8.248 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.034 4.034 3 N -0.135 5.135 4 C -0.443 4.443 5 H 0.114 0.886 6 C -0.166 4.166 7 N -0.500 5.500 8 Si 0.750 3.250 9 H -0.195 1.195 10 H -0.208 1.208 11 H -0.197 1.197 12 C 0.259 3.741 13 O -0.463 6.463 14 C -0.142 4.142 15 H 0.152 0.848 16 C -0.156 4.156 17 C -0.171 4.171 18 H 0.199 0.801 19 N 0.537 4.463 20 O -0.381 6.381 21 O -0.390 6.390 22 H 0.063 0.937 23 H 0.077 0.923 24 H 0.073 0.927 25 H 0.135 0.865 26 H 0.067 0.933 27 H 0.083 0.917 28 H 0.147 0.853 29 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -6.579 -0.760 3.827 7.649 hybrid contribution 0.210 -0.069 -0.511 0.557 sum -6.370 -0.829 3.316 7.229 Atomic orbital electron populations 1.22194 0.97566 1.00762 1.01703 1.21728 0.92229 0.85038 1.04383 1.43430 1.53782 1.11822 1.04437 1.19481 1.40541 0.95776 0.88463 0.88579 1.25403 0.93981 0.96331 1.00883 1.69907 1.31433 1.15007 1.33609 0.86039 0.78809 0.78909 0.81274 1.19528 1.20768 1.19665 1.18957 0.84127 0.87854 0.83204 1.90563 1.51237 1.18408 1.86074 1.23044 1.00832 1.00148 0.90200 0.84766 1.23572 0.88389 1.04506 0.99174 1.25051 1.06382 1.00895 0.84767 0.80078 1.43905 0.99775 0.99974 1.02641 1.94545 1.12837 1.70396 1.60369 1.94490 1.52807 1.22603 1.69074 0.93717 0.92254 0.92741 0.86523 0.93315 0.91732 0.85346 0.85269 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.69 10.16 37.15 0.38 -2.31 15 2 C 0.09 1.82 5.43 -4.04 -0.02 1.80 15 3 N -0.42 -9.94 2.56 -114.81 -0.29 -10.23 15 4 C -0.32 -8.26 8.98 -14.94 -0.13 -8.40 15 5 H 0.10 2.63 7.70 -52.49 -0.40 2.22 15 6 C 0.04 0.99 4.92 -17.47 -0.09 0.90 15 7 N -0.86 -22.11 11.33 55.50 0.63 -21.48 15 8 Si 0.92 19.50 29.61 -169.99 -5.03 14.47 15 9 H -0.27 -5.79 7.11 56.52 0.40 -5.39 15 10 H -0.28 -5.86 7.11 56.52 0.40 -5.46 15 11 H -0.27 -5.59 7.11 56.52 0.40 -5.19 15 12 C 0.47 10.78 7.37 -10.98 -0.08 10.69 15 13 O -0.58 -15.14 16.08 5.55 0.09 -15.05 15 14 C -0.12 -2.09 4.70 -91.77 -0.43 -2.52 15 15 H 0.13 2.24 6.52 -51.93 -0.34 1.90 15 16 C -0.12 -1.60 9.44 -26.70 -0.25 -1.85 15 17 C -0.07 -1.15 6.43 -67.91 -0.44 -1.59 15 18 H 0.18 3.01 7.67 -51.93 -0.40 2.61 15 19 N 0.02 0.30 4.33 -4.87 -0.02 0.28 15 20 O -0.16 -2.98 19.24 -29.46 -0.57 -3.55 15 21 O -0.17 -2.90 18.28 -29.46 -0.54 -3.44 15 22 H 0.04 0.66 7.39 -51.93 -0.38 0.28 15 23 H 0.06 1.03 8.14 -51.93 -0.42 0.61 15 24 H 0.05 0.75 8.14 -51.93 -0.42 0.33 15 25 H 0.12 2.63 5.35 -51.93 -0.28 2.35 15 26 H 0.05 0.90 6.25 -51.93 -0.32 0.58 15 27 H 0.27 6.57 8.31 -40.82 -0.34 6.23 15 28 H 0.13 1.62 8.14 -51.93 -0.42 1.20 15 29 H 0.13 1.47 7.63 -51.93 -0.40 1.07 15 LS Contribution 261.42 15.07 3.94 3.94 Total: -1.00 -29.19 261.42 -5.79 -34.97 By element: Atomic # 1 Polarization: 6.28 SS G_CDS: -2.93 Total: 3.36 kcal Atomic # 6 Polarization: -2.21 SS G_CDS: -1.07 Total: -3.27 kcal Atomic # 7 Polarization: -31.74 SS G_CDS: 0.31 Total: -31.43 kcal Atomic # 8 Polarization: -21.02 SS G_CDS: -1.02 Total: -22.04 kcal Atomic # 14 Polarization: 19.50 SS G_CDS: -5.03 Total: 14.47 kcal Total LS contribution 3.94 Total: 3.94 kcal Total: -29.19 -5.79 -34.97 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000840283944.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.979 kcal (2) G-P(sol) polarization free energy of solvation -29.186 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.207 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.786 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.972 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.993 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds