Wall clock time and date at job start Thu Apr 9 2020 12:00:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86806 * 119.99991 * 2 1 4 4 H 1.48489 * 109.47225 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.46968 * 299.99934 * 3 2 1 6 6 H 1.48505 * 109.46724 * 59.99638 * 3 2 1 7 7 C 1.37875 * 120.00254 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99964 * 180.02562 * 7 2 1 9 9 S 1.76204 * 119.99674 * 359.97438 * 7 2 1 10 10 O 1.42099 * 106.39809 * 66.46580 * 9 7 2 11 11 O 1.42096 * 106.40366 * 293.54302 * 9 7 2 12 12 C 1.76200 * 107.21351 * 180.02562 * 9 7 2 13 13 C 1.38205 * 119.62664 * 270.02343 * 12 9 7 14 14 C 1.38629 * 119.17669 * 180.02562 * 13 12 9 15 15 C 1.38675 * 118.45017 * 359.95183 * 14 13 12 16 16 C 1.38165 * 119.17133 * 0.02710 * 15 14 13 17 17 N 1.31975 * 119.62797 * 90.00809 * 12 9 7 18 18 O 1.41606 * 119.14488 * 0.02562 * 17 12 9 19 19 H 0.96997 * 119.99730 * 0.02562 * 1 2 3 20 20 H 1.08007 * 120.40977 * 0.02562 * 13 12 9 21 21 H 1.08003 * 120.77664 * 179.97438 * 14 13 12 22 22 H 1.07998 * 120.41292 * 180.29717 * 15 14 13 23 23 H 1.07999 * 119.61718 * 180.02562 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 16 1.1235 -2.7200 0.0019 10 8 0.4511 -2.7960 -1.2476 11 8 0.4519 -2.7944 1.2519 12 6 2.3204 -4.0131 0.0031 13 6 2.7848 -4.5152 -1.1979 14 6 3.7261 -5.5330 -1.1861 15 6 4.1683 -6.0097 0.0388 16 6 3.6595 -5.4589 1.1993 17 7 2.7635 -4.4910 1.1507 18 8 2.2643 -3.9516 2.3611 19 1 -0.4849 0.8400 -0.0004 20 1 2.4190 -4.1196 -2.1339 21 1 4.1063 -5.9447 -2.1093 22 1 4.9045 -6.7985 0.0850 23 1 3.9991 -5.8245 2.1571 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000001584795.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:00:40 Heat of formation + Delta-G solvation = -16.254600 kcal Electronic energy + Delta-G solvation = -13992.960220 eV Core-core repulsion = 11322.795175 eV Total energy + Delta-G solvation = -2670.165045 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 229.024 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -40.85128 -35.44075 -34.21290 -33.94565 -33.11858 -31.74597 -29.35981 -26.19467 -24.34110 -23.91975 -19.18346 -18.17843 -17.18303 -16.73480 -16.15485 -15.28600 -15.05072 -14.69513 -14.46160 -13.83681 -13.59907 -12.54875 -12.02984 -11.91067 -11.25007 -11.21485 -11.05397 -10.58136 -10.33813 -10.21775 -9.94826 -9.73663 -9.26460 -8.79440 -8.67503 -8.08801 -6.73272 -5.35487 0.45038 0.80989 1.89098 2.87376 3.07539 3.14674 3.17946 3.23155 4.06266 4.50264 4.60068 4.63869 4.67570 4.79028 5.17214 5.34706 5.61798 5.74104 5.76666 5.96452 6.66457 7.02028 7.28158 7.38057 7.89442 8.83805 10.22395 Molecular weight = 229.02amu Principal moments of inertia in cm(-1) A = 0.037632 B = 0.010336 C = 0.010230 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 743.877685 B = 2708.362484 C = 2736.390621 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.841 5.841 2 C 0.133 3.867 3 Si 0.929 3.071 4 H -0.262 1.262 5 H -0.269 1.269 6 H -0.268 1.268 7 C -0.988 4.988 8 H 0.103 0.897 9 S 2.595 3.405 10 O -0.972 6.972 11 O -0.923 6.923 12 C -0.456 4.456 13 C -0.043 4.043 14 C -0.111 4.111 15 C -0.094 4.094 16 C 0.037 3.963 17 N -0.057 5.057 18 O -0.480 6.480 19 H 0.293 0.707 20 H 0.176 0.824 21 H 0.155 0.845 22 H 0.161 0.839 23 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.631 -8.883 -5.002 14.024 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.470 5.470 2 C -0.086 4.086 3 Si 0.752 3.248 4 H -0.186 1.186 5 H -0.194 1.194 6 H -0.193 1.193 7 C -1.123 5.123 8 H 0.121 0.879 9 S 2.768 3.232 10 O -0.969 6.969 11 O -0.920 6.920 12 C -0.655 4.655 13 C -0.062 4.062 14 C -0.137 4.137 15 C -0.112 4.112 16 C -0.110 4.110 17 N 0.270 4.730 18 O -0.543 6.543 19 H 0.103 0.897 20 H 0.194 0.806 21 H 0.172 0.828 22 H 0.179 0.821 23 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges 8.489 -8.919 -4.668 13.168 hybrid contribution 1.367 0.660 0.136 1.524 sum 9.856 -8.259 -4.532 13.634 Atomic orbital electron populations 1.69896 1.06714 1.30910 1.39507 1.24766 0.94639 1.00721 0.88437 0.86002 0.80314 0.79790 0.78675 1.18563 1.19444 1.19333 1.29916 1.05703 1.09220 1.67428 0.87854 1.02173 0.73082 0.74000 0.73970 1.93382 1.70510 1.87440 1.45585 1.93460 1.69852 1.85789 1.42886 1.34507 1.20525 1.21248 0.89237 1.21842 0.92906 0.93516 0.97906 1.21838 0.96526 0.96233 0.99105 1.21922 0.98739 0.99172 0.91415 1.22799 0.93783 0.92537 1.01870 1.43049 1.10706 1.10093 1.09137 1.97790 1.75444 1.74003 1.07015 0.89669 0.80623 0.82757 0.82115 0.80009 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 24. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -24.76 13.19 55.43 0.73 -24.03 14 2 C 0.13 3.73 5.46 -17.82 -0.10 3.64 14 3 Si 0.93 20.76 29.54 -169.99 -5.02 15.74 14 4 H -0.26 -5.64 7.11 56.52 0.40 -5.24 14 5 H -0.27 -5.66 7.11 56.52 0.40 -5.26 14 6 H -0.27 -5.84 7.11 56.52 0.40 -5.44 14 7 C -0.99 -27.95 9.58 30.60 0.29 -27.66 14 8 H 0.10 2.69 7.81 -52.49 -0.41 2.28 14 9 S 2.60 72.05 4.52 -107.50 -0.49 71.56 14 10 O -0.97 -27.23 17.14 -57.17 -0.98 -28.21 14 11 O -0.92 -29.62 15.60 -66.58 -1.04 -30.66 14 12 C -0.46 -10.02 6.66 -17.50 -0.12 -10.14 14 13 C -0.04 -0.69 9.56 -39.45 -0.38 -1.07 14 14 C -0.11 -1.23 10.17 -39.28 -0.40 -1.63 14 15 C -0.09 -0.98 10.11 -39.45 -0.40 -1.38 14 16 C 0.04 0.57 10.69 -17.51 -0.19 0.38 14 17 N -0.06 -1.27 3.58 -12.42 -0.04 -1.31 14 18 O -0.48 -13.82 17.48 -34.45 -0.60 -14.42 14 19 H 0.29 7.65 8.31 -40.82 -0.34 7.31 14 20 H 0.18 2.49 7.61 -52.48 -0.40 2.09 14 21 H 0.15 0.99 8.06 -52.48 -0.42 0.57 14 22 H 0.16 0.85 8.06 -52.49 -0.42 0.42 14 23 H 0.18 2.19 8.06 -52.49 -0.42 1.77 14 LS Contribution 232.52 15.07 3.50 3.50 Total: -1.00 -40.75 232.52 -6.43 -47.18 By element: Atomic # 1 Polarization: -0.29 SS G_CDS: -1.21 Total: -1.50 kcal Atomic # 6 Polarization: -36.57 SS G_CDS: -1.28 Total: -37.85 kcal Atomic # 7 Polarization: -26.03 SS G_CDS: 0.69 Total: -25.34 kcal Atomic # 8 Polarization: -70.67 SS G_CDS: -2.62 Total: -73.29 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.02 Total: 15.74 kcal Atomic # 16 Polarization: 72.05 SS G_CDS: -0.49 Total: 71.56 kcal Total LS contribution 3.50 Total: 3.50 kcal Total: -40.75 -6.43 -47.18 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000001584795.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.925 kcal (2) G-P(sol) polarization free energy of solvation -40.746 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.821 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.433 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.180 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.255 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds