Wall clock time and date at job start Thu Apr 9 2020 12:01:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30676 * 1 3 3 Si 1.86799 * 119.99878 * 2 1 4 4 H 1.48495 * 109.47233 * 95.27496 * 3 2 1 5 5 H 1.48503 * 109.46981 * 215.27267 * 3 2 1 6 6 H 1.48505 * 109.47040 * 335.27177 * 3 2 1 7 7 C 1.40047 * 119.99855 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00296 * 10.82171 * 7 2 1 9 9 C 1.46381 * 119.99920 * 190.81331 * 7 2 1 10 10 O 1.21693 * 119.99621 * 11.01616 * 9 7 2 11 11 N 1.34774 * 120.00031 * 191.01565 * 9 7 2 12 12 C 1.47075 * 120.88106 * 354.92415 * 11 9 7 13 13 C 1.53698 * 108.27583 * 128.75787 * 12 11 9 14 14 N 1.46901 * 109.25546 * 54.08295 * 13 12 11 15 15 C 1.46899 * 111.00087 * 172.61110 * 14 13 12 16 16 C 1.52996 * 109.47171 * 199.94814 * 15 14 13 17 17 O 1.42903 * 109.47156 * 63.92496 * 16 15 14 18 18 C 1.46898 * 111.26731 * 296.75666 * 14 13 12 19 19 C 1.47080 * 120.87930 * 175.20718 * 11 9 7 20 20 H 0.96999 * 119.99982 * 0.02562 * 1 2 3 21 21 H 1.09002 * 109.63192 * 248.52613 * 12 11 9 22 22 H 1.08999 * 109.63030 * 9.11103 * 12 11 9 23 23 H 1.08996 * 109.64766 * 294.08255 * 13 12 11 24 24 H 1.08994 * 109.42274 * 173.94771 * 13 12 11 25 25 H 1.09003 * 109.46969 * 319.94773 * 15 14 13 26 26 H 1.08995 * 109.47523 * 79.94616 * 15 14 13 27 27 H 1.09008 * 109.47064 * 183.92228 * 16 15 14 28 28 H 1.09001 * 109.47196 * 303.92236 * 16 15 14 29 29 H 0.96696 * 114.00010 * 179.97438 * 17 16 15 30 30 H 1.08996 * 109.49599 * 303.14720 * 18 14 13 31 31 H 1.09005 * 109.51643 * 183.07790 * 18 14 13 32 32 H 1.08999 * 109.62949 * 350.89974 * 19 11 9 33 33 H 1.09001 * 109.62637 * 111.47696 * 19 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3068 0.0000 0.0000 3 14 2.2407 1.6177 0.0000 4 1 2.5997 1.9821 1.3941 5 1 3.4781 1.4749 -0.8085 6 1 1.3868 2.6823 -0.5857 7 6 2.0070 -1.2129 0.0005 8 1 1.4814 -2.1399 -0.1746 9 6 3.4513 -1.2240 0.2384 10 8 4.0109 -0.2175 0.6316 11 7 4.1612 -2.3490 0.0218 12 6 3.4911 -3.6054 -0.3463 13 6 4.1763 -4.1670 -1.6022 14 7 5.6198 -4.2827 -1.3558 15 6 6.2891 -4.9772 -2.4639 16 6 7.6384 -5.5176 -1.9863 17 8 7.4256 -6.4993 -0.9699 18 6 6.2267 -2.9665 -1.1164 19 6 5.6261 -2.3542 0.1534 20 1 -0.4850 0.8400 -0.0004 21 1 3.5776 -4.3200 0.4723 22 1 2.4395 -3.4113 -0.5572 23 1 4.0036 -3.4971 -2.4445 24 1 3.7661 -5.1510 -1.8295 25 1 5.6659 -5.8046 -2.8034 26 1 6.4475 -4.2802 -3.2868 27 1 8.1654 -5.9718 -2.8255 28 1 8.2350 -4.6997 -1.5824 29 1 8.2399 -6.8861 -0.6201 30 1 6.0254 -2.3133 -1.9654 31 1 7.3036 -3.0793 -0.9915 32 1 5.9866 -1.3326 0.2733 33 1 5.9138 -2.9509 1.0191 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000036231530.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:01:11 Heat of formation + Delta-G solvation = -108.907378 kcal Electronic energy + Delta-G solvation = -16425.765135 eV Core-core repulsion = 13678.214344 eV Total energy + Delta-G solvation = -2747.550790 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 228.126 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -40.69568 -38.95672 -37.35251 -35.16971 -35.01533 -32.21721 -30.72043 -28.74270 -26.86584 -24.65378 -23.04171 -22.16935 -20.56261 -18.75361 -18.26985 -18.06971 -16.97817 -16.54456 -16.11951 -15.93841 -15.54550 -15.47694 -14.71659 -14.55723 -14.20296 -14.07188 -13.92626 -13.37855 -13.00971 -12.87632 -12.64586 -12.45739 -12.21057 -11.99833 -11.82925 -11.35387 -11.23950 -10.75195 -10.00401 -9.52678 -9.13080 -8.81876 -7.03017 1.30044 1.34975 1.57734 2.06311 2.31410 2.59998 2.93892 3.29078 3.52611 3.93426 4.07283 4.10491 4.26933 4.33133 4.45994 4.48890 4.53345 4.65255 4.73898 4.81583 4.84896 4.91199 4.98050 5.11929 5.15313 5.65819 5.92225 6.06769 6.09119 6.23344 6.60599 7.07905 7.11980 7.95187 8.23468 Molecular weight = 228.13amu Principal moments of inertia in cm(-1) A = 0.052653 B = 0.006776 C = 0.006393 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 531.658858 B = 4131.041517 C = 4378.409575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.845 5.845 2 C 0.071 3.929 3 Si 1.013 2.987 4 H -0.293 1.293 5 H -0.289 1.289 6 H -0.297 1.297 7 C -0.553 4.553 8 H 0.087 0.913 9 C 0.548 3.452 10 O -0.648 6.648 11 N -0.635 5.635 12 C 0.123 3.877 13 C 0.052 3.948 14 N -0.535 5.535 15 C 0.048 3.952 16 C 0.085 3.915 17 O -0.583 6.583 18 C 0.054 3.946 19 C 0.121 3.879 20 H 0.293 0.707 21 H 0.065 0.935 22 H 0.084 0.916 23 H 0.026 0.974 24 H 0.102 0.898 25 H 0.083 0.917 26 H 0.057 0.943 27 H 0.070 0.930 28 H 0.048 0.952 29 H 0.390 0.610 30 H 0.022 0.978 31 H 0.105 0.895 32 H 0.067 0.933 33 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.346 -11.335 -6.225 18.583 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.476 5.476 2 C -0.145 4.145 3 Si 0.846 3.154 4 H -0.220 1.220 5 H -0.217 1.217 6 H -0.226 1.226 7 C -0.589 4.589 8 H 0.104 0.896 9 C 0.356 3.644 10 O -0.543 6.543 11 N -0.368 5.368 12 C 0.000 4.000 13 C -0.077 4.077 14 N -0.260 5.260 15 C -0.080 4.080 16 C 0.007 3.993 17 O -0.390 6.390 18 C -0.075 4.075 19 C -0.002 4.002 20 H 0.103 0.897 21 H 0.083 0.917 22 H 0.102 0.898 23 H 0.044 0.956 24 H 0.121 0.879 25 H 0.101 0.899 26 H 0.075 0.925 27 H 0.088 0.912 28 H 0.066 0.934 29 H 0.238 0.762 30 H 0.041 0.959 31 H 0.123 0.877 32 H 0.086 0.914 33 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 12.857 -10.965 -5.740 17.846 hybrid contribution 0.436 1.115 -0.447 1.278 sum 13.293 -9.850 -6.187 17.663 Atomic orbital electron populations 1.69564 1.08253 1.31162 1.38589 1.26236 0.95271 1.03744 0.89222 0.84583 0.76234 0.76301 0.78331 1.22033 1.21652 1.22619 1.21008 0.90688 0.96000 1.51172 0.89559 1.18295 0.88139 0.81354 0.76613 1.90146 1.73103 1.34798 1.56264 1.47728 1.06416 1.10035 1.72614 1.21812 0.97301 0.84350 0.96582 1.22518 0.88240 1.01055 0.95863 1.61907 1.02697 1.18815 1.42549 1.22290 0.96259 0.98017 0.91406 1.22190 0.95361 0.90924 0.90787 1.86564 1.37080 1.58012 1.57371 1.22430 0.99921 0.89056 0.96067 1.21459 0.80445 1.00466 0.97825 0.89701 0.91707 0.89758 0.95599 0.87942 0.89884 0.92474 0.91166 0.93427 0.76161 0.95930 0.87735 0.91422 0.91753 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -48.22 13.92 21.84 0.30 -47.92 16 2 C 0.07 4.14 5.52 85.30 0.47 4.61 16 3 Si 1.01 53.68 25.83 68.60 1.77 55.45 16 4 H -0.29 -16.12 7.11 99.48 0.71 -15.41 16 5 H -0.29 -16.29 6.69 99.48 0.67 -15.62 16 6 H -0.30 -14.21 7.11 99.48 0.71 -13.51 16 7 C -0.55 -31.96 9.37 24.83 0.23 -31.73 16 8 H 0.09 4.95 5.97 -2.91 -0.02 4.93 16 9 C 0.55 30.32 7.35 86.36 0.63 30.96 16 10 O -0.65 -38.93 11.84 -4.33 -0.05 -38.98 16 11 N -0.64 -28.60 3.00 -822.13 -2.47 -31.07 16 12 C 0.12 4.63 6.54 86.50 0.57 5.20 16 13 C 0.05 1.59 5.61 86.54 0.49 2.07 16 14 N -0.53 -14.98 4.49 -894.34 -4.01 -19.00 16 15 C 0.05 1.01 5.39 86.30 0.47 1.47 16 16 C 0.09 1.43 7.23 71.98 0.52 1.95 16 17 O -0.58 -11.58 13.59 -148.98 -2.02 -13.61 16 18 C 0.05 1.60 5.45 86.38 0.47 2.07 16 19 C 0.12 4.59 6.58 86.35 0.57 5.16 16 20 H 0.29 15.21 8.29 -92.71 -0.77 14.44 16 21 H 0.06 2.32 8.14 -2.39 -0.02 2.30 16 22 H 0.08 3.45 5.39 -2.39 -0.01 3.44 16 23 H 0.03 0.85 8.14 -2.39 -0.02 0.83 16 24 H 0.10 2.61 7.90 -2.39 -0.02 2.60 16 25 H 0.08 1.69 7.77 -2.39 -0.02 1.67 16 26 H 0.06 1.10 8.00 -2.39 -0.02 1.08 16 27 H 0.07 0.82 8.14 -2.38 -0.02 0.80 16 28 H 0.05 0.76 6.71 -2.39 -0.02 0.75 16 29 H 0.39 4.05 9.12 -74.06 -0.68 3.38 16 30 H 0.02 0.73 8.14 -2.39 -0.02 0.71 16 31 H 0.10 2.47 6.63 -2.38 -0.02 2.46 16 32 H 0.07 2.80 7.09 -2.39 -0.02 2.78 16 33 H 0.06 2.30 8.14 -2.39 -0.02 2.28 16 Total: -1.00 -71.79 266.20 -1.67 -73.46 By element: Atomic # 1 Polarization: -0.51 SS G_CDS: 0.40 Total: -0.11 kcal Atomic # 6 Polarization: 17.35 SS G_CDS: 4.41 Total: 21.76 kcal Atomic # 7 Polarization: -91.81 SS G_CDS: -6.18 Total: -97.99 kcal Atomic # 8 Polarization: -50.51 SS G_CDS: -2.08 Total: -52.58 kcal Atomic # 14 Polarization: 53.68 SS G_CDS: 1.77 Total: 55.45 kcal Total: -71.79 -1.67 -73.46 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000036231530.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.450 kcal (2) G-P(sol) polarization free energy of solvation -71.790 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.240 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.667 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.457 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds