Wall clock time and date at job start Thu Apr 9 2020 11:59:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.42899 * 113.99771 * 2 1 4 4 H 1.08996 * 109.47508 * 30.00137 * 3 2 1 5 5 C 1.52997 * 109.47236 * 269.99672 * 3 2 1 6 6 C 1.50700 * 109.46525 * 150.00198 * 3 2 1 7 7 O 1.20823 * 120.00658 * 4.99324 * 6 3 2 8 8 O 1.34238 * 119.99613 * 184.99853 * 6 3 2 9 9 C 1.45204 * 116.99974 * 179.97438 * 8 6 3 10 10 H 1.08997 * 109.46844 * 330.00317 * 9 8 6 11 11 C 1.50702 * 109.47064 * 210.00105 * 9 8 6 12 12 H 1.08003 * 119.99700 * 0.02562 * 11 9 8 13 13 C 1.37873 * 119.99831 * 179.97438 * 11 9 8 14 14 N 1.31514 * 120.00337 * 0.02562 * 13 11 9 15 15 Si 1.86803 * 119.99905 * 180.02562 * 13 11 9 16 16 H 1.48493 * 109.47013 * 90.00218 * 15 13 11 17 17 H 1.48509 * 109.46945 * 210.00304 * 15 13 11 18 18 H 1.48497 * 109.47052 * 330.00019 * 15 13 11 19 19 C 1.52996 * 109.46855 * 90.00152 * 9 8 6 20 20 C 1.53002 * 117.49888 * 231.25352 * 19 9 8 21 21 C 1.53000 * 117.50107 * 299.91114 * 19 9 8 22 22 H 1.08997 * 109.46599 * 179.97438 * 1 2 3 23 23 H 1.08992 * 109.46985 * 299.99801 * 1 2 3 24 24 H 1.08999 * 109.47043 * 60.00293 * 1 2 3 25 25 H 1.09002 * 109.46926 * 60.00261 * 5 3 2 26 26 H 1.09000 * 109.47461 * 180.02562 * 5 3 2 27 27 H 1.09006 * 109.47308 * 300.00609 * 5 3 2 28 28 H 0.96991 * 120.00328 * 179.97438 * 14 13 11 29 29 H 1.09002 * 115.54951 * 85.58326 * 19 9 8 30 30 H 1.09000 * 117.49996 * 215.00804 * 20 19 9 31 31 H 1.08999 * 117.49664 * 0.02562 * 20 19 9 32 32 H 1.09008 * 117.49673 * 359.97438 * 21 19 9 33 33 H 1.08999 * 117.49959 * 144.99502 * 21 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3450 1.9994 0.5138 5 6 2.2177 1.7714 -1.4425 6 6 3.3387 1.2638 0.7104 7 8 3.7880 0.2084 1.0900 8 8 4.0227 2.3993 0.9215 9 6 5.2946 2.2839 1.6124 10 1 5.2617 1.4345 2.2946 11 6 5.5583 3.5455 2.3934 12 1 4.8414 4.3531 2.3729 13 6 6.7141 3.6684 3.1350 14 7 7.5868 2.6848 3.1603 15 14 7.0406 5.2319 4.1036 16 1 6.4742 5.0953 5.4695 17 1 8.5051 5.4605 4.1956 18 1 6.4023 6.3828 3.4157 19 6 6.4132 2.0739 0.5899 20 6 7.3663 0.8988 0.8169 21 6 6.3281 0.8367 -0.3061 22 1 -0.3632 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 1.2569 1.8014 -1.9563 26 1 2.6615 2.7670 -1.4425 27 1 2.8830 1.0774 -1.9563 28 1 8.4001 2.7714 3.6817 29 1 6.8292 2.9827 0.1550 30 1 8.4095 1.0345 0.5314 31 1 7.1962 0.2751 1.6945 32 1 5.4754 0.1721 -0.1669 33 1 6.6881 0.9315 -1.3306 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001344938143.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 11:59:37 Heat of formation + Delta-G solvation = -108.804950 kcal Electronic energy + Delta-G solvation = -16512.455833 eV Core-core repulsion = 13732.616733 eV Total energy + Delta-G solvation = -2779.839100 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 228.119 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.80883 -37.87102 -36.14558 -34.83606 -32.65237 -31.52399 -27.83369 -26.79690 -24.37485 -22.96764 -21.21036 -20.44371 -19.14275 -17.30544 -16.94411 -16.08380 -15.93597 -15.27859 -14.79586 -14.57634 -13.94329 -13.67400 -13.15522 -12.59875 -12.51938 -12.19326 -11.80329 -11.53146 -11.30255 -11.06338 -10.99892 -10.89906 -10.38335 -10.26969 -9.91595 -9.82201 -9.45351 -9.25655 -8.98803 -8.62798 -8.41937 -6.14341 -4.22602 2.98033 3.10870 3.25603 3.31883 3.36631 4.19912 4.37725 4.96086 5.05919 5.10865 5.18018 5.26607 5.35768 5.55119 5.60297 5.75665 5.85898 5.98444 6.19163 6.22493 6.41054 6.59604 6.69127 7.03204 7.10135 7.19407 7.29427 7.42546 7.63881 7.87208 8.12715 8.66428 8.90612 9.41974 10.92434 Molecular weight = 228.12amu Principal moments of inertia in cm(-1) A = 0.033607 B = 0.007768 C = 0.006924 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 832.971963 B = 3603.661003 C = 4042.822342 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.364 6.364 3 C 0.093 3.907 4 H 0.093 0.907 5 C -0.166 4.166 6 C 0.453 3.547 7 O -0.499 6.499 8 O -0.350 6.350 9 C 0.249 3.751 10 H 0.048 0.952 11 C -0.528 4.528 12 H 0.069 0.931 13 C 0.069 3.931 14 N -0.872 5.872 15 Si 0.907 3.093 16 H -0.279 1.279 17 H -0.285 1.285 18 H -0.272 1.272 19 C -0.115 4.115 20 C -0.124 4.124 21 C -0.229 4.229 22 H 0.089 0.911 23 H 0.044 0.956 24 H 0.043 0.957 25 H 0.065 0.935 26 H 0.083 0.917 27 H 0.068 0.932 28 H 0.264 0.736 29 H 0.089 0.911 30 H 0.074 0.926 31 H 0.088 0.912 32 H 0.094 0.906 33 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.618 -1.183 -6.813 11.846 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.282 6.282 3 C 0.034 3.966 4 H 0.110 0.890 5 C -0.223 4.223 6 C 0.294 3.706 7 O -0.388 6.388 8 O -0.267 6.267 9 C 0.197 3.803 10 H 0.066 0.934 11 C -0.566 4.566 12 H 0.087 0.913 13 C -0.135 4.135 14 N -0.508 5.508 15 Si 0.734 3.266 16 H -0.205 1.205 17 H -0.210 1.210 18 H -0.197 1.197 19 C -0.134 4.134 20 C -0.161 4.161 21 C -0.266 4.266 22 H 0.107 0.893 23 H 0.062 0.938 24 H 0.061 0.939 25 H 0.084 0.916 26 H 0.102 0.898 27 H 0.087 0.913 28 H 0.074 0.926 29 H 0.107 0.893 30 H 0.092 0.908 31 H 0.107 0.893 32 H 0.112 0.888 33 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -9.129 -1.702 -6.596 11.391 hybrid contribution 0.245 0.909 0.563 1.096 sum -8.884 -0.793 -6.033 10.768 Atomic orbital electron populations 1.22857 0.80750 1.02997 1.00047 1.88023 1.19546 1.25676 1.94966 1.21475 0.92082 0.86185 0.96837 0.88971 1.22164 1.02849 1.03076 0.94224 1.22988 0.86491 0.83590 0.77502 1.90586 1.68861 1.31936 1.47376 1.86462 1.36385 1.33345 1.70479 1.20235 0.72985 0.99260 0.87828 0.93412 1.20903 1.06026 1.01040 1.28643 0.91282 1.24884 0.95412 0.97089 0.96163 1.70048 1.09907 1.31182 1.39699 0.86357 0.77398 0.82746 0.80099 1.20480 1.21023 1.19656 1.22587 1.00690 0.91107 0.99009 1.22367 0.93871 1.01873 0.97981 1.23291 1.03709 1.04647 0.94950 0.89302 0.93786 0.93879 0.91560 0.89835 0.91251 0.92604 0.89308 0.90766 0.89343 0.88787 0.91014 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 10.82 101.05 1.09 1.41 16 2 O -0.36 -5.86 9.89 -55.14 -0.55 -6.40 16 3 C 0.09 1.49 3.24 -27.88 -0.09 1.40 16 4 H 0.09 1.25 7.79 -51.93 -0.40 0.85 16 5 C -0.17 -2.19 9.50 37.16 0.35 -1.84 16 6 C 0.45 9.75 6.51 36.01 0.23 9.99 16 7 O -0.50 -12.29 13.55 -25.46 -0.34 -12.64 16 8 O -0.35 -8.29 9.84 -39.28 -0.39 -8.67 16 9 C 0.25 6.62 2.25 -27.88 -0.06 6.56 16 10 H 0.05 1.42 6.91 -51.93 -0.36 1.06 16 11 C -0.53 -14.67 8.88 -34.44 -0.31 -14.98 16 12 H 0.07 1.89 7.81 -52.48 -0.41 1.48 16 13 C 0.07 1.87 5.30 -17.82 -0.09 1.77 16 14 N -0.87 -24.32 11.43 55.43 0.63 -23.68 16 15 Si 0.91 20.89 29.54 -169.99 -5.02 15.87 16 16 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 17 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 18 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 19 C -0.11 -2.85 4.47 -90.62 -0.41 -3.26 16 20 C -0.12 -2.91 9.04 -26.69 -0.24 -3.15 16 21 C -0.23 -5.07 9.80 -26.70 -0.26 -5.33 16 22 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 23 H 0.04 0.43 8.08 -51.93 -0.42 0.01 16 24 H 0.04 0.37 7.87 -51.93 -0.41 -0.04 16 25 H 0.07 0.67 7.87 -51.93 -0.41 0.27 16 26 H 0.08 1.10 8.14 -51.93 -0.42 0.67 16 27 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 28 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 29 H 0.09 2.25 8.11 -51.93 -0.42 1.82 16 30 H 0.07 1.63 8.14 -51.93 -0.42 1.21 16 31 H 0.09 2.23 8.05 -51.93 -0.42 1.81 16 32 H 0.09 2.19 5.37 -51.92 -0.28 1.91 16 33 H 0.07 1.41 8.14 -51.93 -0.42 0.98 16 LS Contribution 282.28 15.07 4.25 4.25 Total: -1.00 -30.90 282.28 -5.97 -36.87 By element: Atomic # 1 Polarization: 6.59 SS G_CDS: -4.78 Total: 1.82 kcal Atomic # 6 Polarization: -7.64 SS G_CDS: 0.22 Total: -7.42 kcal Atomic # 7 Polarization: -24.32 SS G_CDS: 0.63 Total: -23.68 kcal Atomic # 8 Polarization: -26.44 SS G_CDS: -1.28 Total: -27.72 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.87 kcal Total LS contribution 4.25 Total: 4.25 kcal Total: -30.90 -5.97 -36.87 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001344938143.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.932 kcal (2) G-P(sol) polarization free energy of solvation -30.904 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.837 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.968 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.873 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.805 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds