Wall clock time and date at job start Thu Apr 9 2020 11:59:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.42899 * 113.99771 * 2 1 4 4 H 1.08996 * 109.47508 * 30.00137 * 3 2 1 5 5 C 1.52997 * 109.47236 * 269.99672 * 3 2 1 6 6 C 1.50700 * 109.46525 * 150.00198 * 3 2 1 7 7 O 1.20823 * 120.00658 * 4.99324 * 6 3 2 8 8 O 1.34238 * 119.99613 * 184.99853 * 6 3 2 9 9 C 1.45204 * 116.99974 * 179.97438 * 8 6 3 10 10 H 1.08997 * 109.46844 * 330.00317 * 9 8 6 11 11 C 1.50702 * 109.47064 * 210.00105 * 9 8 6 12 12 H 1.08003 * 119.99700 * 0.02562 * 11 9 8 13 13 C 1.37873 * 119.99831 * 179.97438 * 11 9 8 14 14 N 1.31514 * 120.00337 * 0.02562 * 13 11 9 15 15 Si 1.86803 * 119.99905 * 180.02562 * 13 11 9 16 16 H 1.48493 * 109.47013 * 90.00218 * 15 13 11 17 17 H 1.48509 * 109.46945 * 210.00304 * 15 13 11 18 18 H 1.48497 * 109.47052 * 330.00019 * 15 13 11 19 19 C 1.52996 * 109.46855 * 90.00152 * 9 8 6 20 20 C 1.53002 * 117.49888 * 231.25352 * 19 9 8 21 21 C 1.53000 * 117.50107 * 299.91114 * 19 9 8 22 22 H 1.08997 * 109.46599 * 179.97438 * 1 2 3 23 23 H 1.08992 * 109.46985 * 299.99801 * 1 2 3 24 24 H 1.08999 * 109.47043 * 60.00293 * 1 2 3 25 25 H 1.09002 * 109.46926 * 60.00261 * 5 3 2 26 26 H 1.09000 * 109.47461 * 180.02562 * 5 3 2 27 27 H 1.09006 * 109.47308 * 300.00609 * 5 3 2 28 28 H 0.96991 * 120.00328 * 179.97438 * 14 13 11 29 29 H 1.09002 * 115.54951 * 85.58326 * 19 9 8 30 30 H 1.09000 * 117.49996 * 215.00804 * 20 19 9 31 31 H 1.08999 * 117.49664 * 0.02562 * 20 19 9 32 32 H 1.09008 * 117.49673 * 359.97438 * 21 19 9 33 33 H 1.08999 * 117.49959 * 144.99502 * 21 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3450 1.9994 0.5138 5 6 2.2177 1.7714 -1.4425 6 6 3.3387 1.2638 0.7104 7 8 3.7880 0.2084 1.0900 8 8 4.0227 2.3993 0.9215 9 6 5.2946 2.2839 1.6124 10 1 5.2617 1.4345 2.2946 11 6 5.5583 3.5455 2.3934 12 1 4.8414 4.3531 2.3729 13 6 6.7141 3.6684 3.1350 14 7 7.5868 2.6848 3.1603 15 14 7.0406 5.2319 4.1036 16 1 6.4742 5.0953 5.4695 17 1 8.5051 5.4605 4.1956 18 1 6.4023 6.3828 3.4157 19 6 6.4132 2.0739 0.5899 20 6 7.3663 0.8988 0.8169 21 6 6.3281 0.8367 -0.3061 22 1 -0.3632 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 1.2569 1.8014 -1.9563 26 1 2.6615 2.7670 -1.4425 27 1 2.8830 1.0774 -1.9563 28 1 8.4001 2.7714 3.6817 29 1 6.8292 2.9827 0.1550 30 1 8.4095 1.0345 0.5314 31 1 7.1962 0.2751 1.6945 32 1 5.4754 0.1721 -0.1669 33 1 6.6881 0.9315 -1.3306 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001344938143.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 11:59:36 Heat of formation + Delta-G solvation = -127.520140 kcal Electronic energy + Delta-G solvation = -16513.267385 eV Core-core repulsion = 13732.616733 eV Total energy + Delta-G solvation = -2780.650652 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 228.119 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.52815 -39.20857 -37.94392 -36.70245 -34.72171 -32.73091 -29.84447 -27.70471 -25.94920 -24.76187 -23.08441 -22.09197 -21.05354 -19.06433 -18.58967 -17.74180 -17.46779 -16.89890 -16.43849 -16.08662 -15.67634 -15.18003 -14.63207 -14.26937 -13.80789 -13.48692 -13.27814 -13.20267 -12.98759 -12.78105 -12.76454 -12.28478 -12.16719 -12.10248 -11.80125 -11.41112 -11.20497 -10.96995 -10.69307 -10.60842 -10.44157 -8.21630 -6.39322 1.29889 1.42558 1.44541 1.54277 1.68622 2.40220 2.99494 3.05858 3.23514 3.78981 3.92549 4.01882 4.09993 4.29624 4.42806 4.48979 4.56497 4.65893 4.71909 4.79654 4.83096 4.86448 5.10085 5.20494 5.24085 5.38217 5.47600 5.55082 5.83862 6.04543 6.12496 6.64807 6.99708 7.30650 8.84862 Molecular weight = 228.12amu Principal moments of inertia in cm(-1) A = 0.033607 B = 0.007768 C = 0.006924 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 832.971963 B = 3603.661003 C = 4042.822342 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.396 6.396 3 C 0.101 3.899 4 H 0.120 0.880 5 C -0.159 4.159 6 C 0.443 3.557 7 O -0.538 6.538 8 O -0.354 6.354 9 C 0.253 3.747 10 H 0.003 0.997 11 C -0.556 4.556 12 H 0.067 0.933 13 C 0.024 3.976 14 N -0.896 5.896 15 Si 0.977 3.023 16 H -0.275 1.275 17 H -0.277 1.277 18 H -0.264 1.264 19 C -0.130 4.130 20 C -0.124 4.124 21 C -0.200 4.200 22 H 0.102 0.898 23 H 0.052 0.948 24 H 0.070 0.930 25 H 0.105 0.895 26 H 0.083 0.917 27 H 0.056 0.944 28 H 0.267 0.733 29 H 0.084 0.916 30 H 0.091 0.909 31 H 0.062 0.938 32 H 0.081 0.919 33 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.634 -0.103 -7.879 13.235 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.315 6.315 3 C 0.043 3.957 4 H 0.138 0.862 5 C -0.216 4.216 6 C 0.287 3.713 7 O -0.429 6.429 8 O -0.271 6.271 9 C 0.200 3.800 10 H 0.021 0.979 11 C -0.594 4.594 12 H 0.085 0.915 13 C -0.178 4.178 14 N -0.532 5.532 15 Si 0.800 3.200 16 H -0.200 1.200 17 H -0.202 1.202 18 H -0.188 1.188 19 C -0.149 4.149 20 C -0.161 4.161 21 C -0.237 4.237 22 H 0.120 0.880 23 H 0.071 0.929 24 H 0.089 0.911 25 H 0.124 0.876 26 H 0.102 0.898 27 H 0.076 0.924 28 H 0.076 0.924 29 H 0.102 0.898 30 H 0.110 0.890 31 H 0.081 0.919 32 H 0.099 0.901 33 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -10.175 -0.625 -7.679 12.763 hybrid contribution 0.474 0.482 0.906 1.130 sum -9.701 -0.144 -6.773 11.832 Atomic orbital electron populations 1.23172 0.77876 1.04570 1.01825 1.87985 1.22627 1.25743 1.95186 1.21601 0.89034 0.87148 0.97964 0.86231 1.22167 1.04815 1.02405 0.92224 1.24319 0.88002 0.82295 0.76682 1.90561 1.70192 1.33042 1.49060 1.86452 1.35637 1.34722 1.70271 1.19882 0.74895 0.97167 0.88018 0.97888 1.21188 1.06710 1.01452 1.30020 0.91489 1.25752 0.94896 1.00368 0.96774 1.70167 1.10144 1.32890 1.40013 0.85284 0.77484 0.78750 0.78460 1.20047 1.20244 1.18769 1.22415 1.00812 0.91677 0.99961 1.22291 0.94979 1.00984 0.97893 1.23256 1.02351 1.02017 0.96044 0.87986 0.92905 0.91119 0.87625 0.89845 0.92445 0.92362 0.89804 0.89045 0.91927 0.90095 0.87603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.39 10.82 113.37 1.23 1.62 16 2 O -0.40 -12.17 9.89 -129.95 -1.28 -13.46 16 3 C 0.10 3.09 3.24 29.85 0.10 3.19 16 4 H 0.12 2.95 7.79 -2.39 -0.02 2.93 16 5 C -0.16 -3.80 9.50 71.98 0.68 -3.12 16 6 C 0.44 19.33 6.51 71.24 0.46 19.80 16 7 O -0.54 -27.46 13.55 28.39 0.38 -27.07 16 8 O -0.35 -17.10 9.84 -51.49 -0.51 -17.61 16 9 C 0.25 13.94 2.25 29.85 0.07 14.00 16 10 H 0.00 0.21 6.91 -2.39 -0.02 0.19 16 11 C -0.56 -31.53 8.88 25.60 0.23 -31.31 16 12 H 0.07 3.71 7.81 -2.91 -0.02 3.69 16 13 C 0.02 1.32 5.30 84.65 0.45 1.77 16 14 N -0.90 -50.76 11.43 21.45 0.25 -50.51 16 15 Si 0.98 42.75 29.54 68.60 2.03 44.78 16 16 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 17 H -0.28 -11.74 7.11 99.48 0.71 -11.03 16 18 H -0.26 -11.11 7.11 99.48 0.71 -10.40 16 19 C -0.13 -6.54 4.47 -10.79 -0.05 -6.59 16 20 C -0.12 -5.94 9.04 30.62 0.28 -5.66 16 21 C -0.20 -8.78 9.80 30.62 0.30 -8.48 16 22 H 0.10 1.61 8.14 -2.39 -0.02 1.59 16 23 H 0.05 0.89 8.08 -2.39 -0.02 0.87 16 24 H 0.07 0.93 7.87 -2.39 -0.02 0.91 16 25 H 0.11 1.70 7.87 -2.39 -0.02 1.69 16 26 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 27 H 0.06 1.51 8.14 -2.38 -0.02 1.49 16 28 H 0.27 14.25 8.31 -92.72 -0.77 13.48 16 29 H 0.08 4.28 8.11 -2.39 -0.02 4.26 16 30 H 0.09 3.99 8.14 -2.39 -0.02 3.97 16 31 H 0.06 3.30 8.05 -2.39 -0.02 3.28 16 32 H 0.08 3.82 5.37 -2.38 -0.01 3.80 16 33 H 0.11 3.92 8.14 -2.39 -0.02 3.90 16 Total: -1.00 -68.82 282.28 5.70 -63.13 By element: Atomic # 1 Polarization: 14.44 SS G_CDS: 1.09 Total: 15.53 kcal Atomic # 6 Polarization: -18.53 SS G_CDS: 3.74 Total: -14.78 kcal Atomic # 7 Polarization: -50.76 SS G_CDS: 0.25 Total: -50.51 kcal Atomic # 8 Polarization: -56.73 SS G_CDS: -1.41 Total: -58.14 kcal Atomic # 14 Polarization: 42.75 SS G_CDS: 2.03 Total: 44.78 kcal Total: -68.82 5.70 -63.13 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001344938143.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.394 kcal (2) G-P(sol) polarization free energy of solvation -68.821 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.695 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.126 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.520 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds