Wall clock time and date at job start Thu Apr 9 2020 12:00:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.46909 * 2 1 4 4 H 1.08996 * 109.47247 * 55.00388 * 3 2 1 5 5 C 1.50698 * 109.46878 * 174.99910 * 3 2 1 6 6 H 1.08000 * 120.00261 * 119.99859 * 5 3 2 7 7 C 1.37876 * 120.00367 * 299.99942 * 5 3 2 8 8 N 1.31518 * 119.99585 * 0.02562 * 7 5 3 9 9 Si 1.86800 * 120.00597 * 180.02562 * 7 5 3 10 10 H 1.48499 * 109.47203 * 89.99843 * 9 7 5 11 11 H 1.48498 * 109.47068 * 210.00229 * 9 7 5 12 12 H 1.48502 * 109.46842 * 330.00166 * 9 7 5 13 13 O 1.45200 * 109.47181 * 295.00005 * 3 2 1 14 14 C 1.34218 * 116.99994 * 90.00284 * 13 3 2 15 15 O 1.20821 * 120.00317 * 359.97438 * 14 13 3 16 16 C 1.50704 * 119.99805 * 179.97438 * 14 13 3 17 17 H 1.08995 * 115.56317 * 34.31469 * 16 14 13 18 18 C 1.52994 * 117.50059 * 248.61679 * 16 14 13 19 19 C 1.52995 * 60.00515 * 252.51338 * 18 16 14 20 20 H 1.08999 * 117.51567 * 107.47800 * 19 18 16 21 21 O 1.42898 * 117.49838 * 252.51041 * 19 18 16 22 22 C 1.42903 * 113.99979 * 218.61753 * 21 19 18 23 23 H 1.09000 * 109.46910 * 60.00319 * 1 2 3 24 24 H 1.09000 * 109.46931 * 179.97438 * 1 2 3 25 25 H 1.08993 * 109.47230 * 299.99850 * 1 2 3 26 26 H 1.09001 * 109.47497 * 240.00013 * 2 1 3 27 27 H 1.09001 * 109.47300 * 120.00043 * 2 1 3 28 28 H 0.97005 * 119.99603 * 180.02562 * 8 7 5 29 29 H 1.09007 * 117.49891 * 145.02282 * 18 16 14 30 30 H 1.09004 * 117.50031 * 0.02562 * 18 16 14 31 31 H 1.09002 * 109.47382 * 300.00227 * 22 21 19 32 32 H 1.09001 * 109.46938 * 180.02562 * 22 21 19 33 33 H 1.09004 * 109.46926 * 60.00334 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5418 1.4443 0.1239 6 1 4.1472 1.8888 -0.6523 7 6 4.1433 0.8784 1.2280 8 7 3.4062 0.3366 2.1729 9 14 6.0049 0.8813 1.3819 10 1 6.4416 2.1142 2.0850 11 1 6.4395 -0.3098 2.1550 12 1 6.6136 0.8417 0.0279 13 8 1.6558 2.0917 -1.2407 14 6 0.4728 2.7254 -1.2559 15 8 -0.2192 2.7370 -0.2656 16 6 0.0075 3.4226 -2.5084 17 1 0.2964 2.9476 -3.4460 18 6 -0.0611 4.9507 -2.4823 19 6 -1.3501 4.1268 -2.4622 20 1 -1.9067 4.0855 -1.5260 21 8 -2.1421 4.1116 -3.6514 22 6 -3.5506 4.1425 -3.4122 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8899 26 1 1.8934 -0.5138 -0.8900 27 1 1.8934 -0.5138 0.8900 28 1 3.8293 -0.0612 2.9498 29 1 0.1827 5.4813 -3.4028 30 1 0.2307 5.4520 -1.5594 31 1 -3.8383 3.2718 -2.8229 32 1 -4.0813 4.1280 -4.3642 33 1 -3.8066 5.0510 -2.8668 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001348314939.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:00:01 Heat of formation + Delta-G solvation = -111.634025 kcal Electronic energy + Delta-G solvation = -16111.723918 eV Core-core repulsion = 13331.762140 eV Total energy + Delta-G solvation = -2779.961778 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 228.119 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.91298 -38.27567 -35.99252 -34.59396 -33.47359 -31.33933 -27.45562 -26.81354 -24.67640 -22.94716 -22.11394 -20.36838 -19.32079 -17.66573 -16.71480 -16.21411 -15.74572 -15.23099 -15.10141 -14.83253 -14.37517 -13.21415 -13.00713 -12.85608 -12.41884 -11.97279 -11.58922 -11.46056 -11.41425 -11.27479 -11.17960 -10.94561 -10.66996 -10.48911 -10.27770 -9.79912 -9.65998 -9.36779 -9.25649 -8.80026 -8.45406 -6.18399 -4.25405 2.78274 3.15514 3.24995 3.30863 3.35931 3.81343 4.06845 4.35128 4.78284 4.94236 5.04255 5.13587 5.25502 5.33470 5.49210 5.58327 5.67965 5.81570 6.08569 6.23475 6.30463 6.46507 6.87748 6.96716 7.05818 7.16925 7.26060 7.62078 7.73856 7.94751 8.16081 8.64418 8.90226 9.39893 10.88409 Molecular weight = 228.12amu Principal moments of inertia in cm(-1) A = 0.046669 B = 0.006126 C = 0.005657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 599.827851 B = 4569.802828 C = 4948.049113 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.136 4.136 3 C 0.220 3.780 4 H 0.047 0.953 5 C -0.521 4.521 6 H 0.069 0.931 7 C 0.063 3.937 8 N -0.888 5.888 9 Si 0.911 3.089 10 H -0.278 1.278 11 H -0.284 1.284 12 H -0.271 1.271 13 O -0.349 6.349 14 C 0.484 3.516 15 O -0.520 6.520 16 C -0.166 4.166 17 H 0.135 0.865 18 C -0.153 4.153 19 C 0.046 3.954 20 H 0.126 0.874 21 O -0.358 6.358 22 C 0.032 3.968 23 H 0.032 0.968 24 H 0.033 0.967 25 H 0.052 0.948 26 H 0.042 0.958 27 H 0.109 0.891 28 H 0.266 0.734 29 H 0.112 0.888 30 H 0.109 0.891 31 H 0.046 0.954 32 H 0.088 0.912 33 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.870 5.847 -8.093 13.355 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.174 4.174 3 C 0.168 3.832 4 H 0.065 0.935 5 C -0.559 4.559 6 H 0.087 0.913 7 C -0.139 4.139 8 N -0.526 5.526 9 Si 0.738 3.262 10 H -0.204 1.204 11 H -0.209 1.209 12 H -0.196 1.196 13 O -0.265 6.265 14 C 0.327 3.673 15 O -0.411 6.411 16 C -0.185 4.185 17 H 0.153 0.847 18 C -0.190 4.190 19 C -0.012 4.012 20 H 0.144 0.856 21 O -0.276 6.276 22 C -0.065 4.065 23 H 0.051 0.949 24 H 0.052 0.948 25 H 0.072 0.928 26 H 0.061 0.939 27 H 0.127 0.873 28 H 0.076 0.924 29 H 0.130 0.870 30 H 0.127 0.873 31 H 0.065 0.935 32 H 0.106 0.894 33 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -8.933 5.704 -7.780 13.148 hybrid contribution 0.778 -0.196 0.427 0.909 sum -8.155 5.508 -7.353 12.285 Atomic orbital electron populations 1.21860 0.98394 0.99015 1.00735 1.22022 0.92639 0.99336 1.03404 1.20710 0.95070 0.88807 0.78606 0.93513 1.21053 0.89667 1.38940 1.06266 0.91293 1.24885 0.99261 0.94722 0.95058 1.69896 1.35391 1.37873 1.09470 0.86278 0.83856 0.77681 0.78361 1.20408 1.20943 1.19571 1.86468 1.33784 1.62116 1.44128 1.22100 0.80828 0.76531 0.87811 1.90590 1.55718 1.59019 1.35728 1.22228 1.01915 0.96183 0.98203 0.84742 1.23467 0.99665 0.91125 1.04773 1.22763 0.86899 1.02017 0.89538 0.85644 1.87797 1.17323 1.93977 1.28545 1.22841 0.80740 1.00538 1.02343 0.94927 0.94794 0.92849 0.93924 0.87293 0.92397 0.86968 0.87258 0.93494 0.89392 0.93637 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.18 8.57 37.16 0.32 -2.86 16 2 C -0.14 -3.42 5.49 -26.73 -0.15 -3.57 16 3 C 0.22 5.92 2.25 -27.88 -0.06 5.86 16 4 H 0.05 1.38 7.16 -51.93 -0.37 1.01 16 5 C -0.52 -14.69 8.90 -34.44 -0.31 -15.00 16 6 H 0.07 1.92 7.81 -52.49 -0.41 1.51 16 7 C 0.06 1.73 5.29 -17.82 -0.09 1.63 16 8 N -0.89 -25.13 11.29 55.43 0.63 -24.50 16 9 Si 0.91 21.08 29.54 -169.99 -5.02 16.05 16 10 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 11 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 12 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 13 O -0.35 -8.48 9.81 -39.23 -0.38 -8.87 16 14 C 0.48 10.26 6.20 36.01 0.22 10.48 16 15 O -0.52 -11.94 13.40 -18.75 -0.25 -12.19 16 16 C -0.17 -2.70 6.25 -91.77 -0.57 -3.27 16 17 H 0.13 2.04 8.14 -51.93 -0.42 1.62 16 18 C -0.15 -2.04 10.18 -26.74 -0.27 -2.31 16 19 C 0.05 0.65 5.96 -26.73 -0.16 0.49 16 20 H 0.13 1.77 7.45 -51.93 -0.39 1.38 16 21 O -0.36 -4.73 10.96 -35.23 -0.39 -5.12 16 22 C 0.03 0.30 10.88 101.05 1.10 1.40 16 23 H 0.03 0.70 6.06 -51.93 -0.31 0.39 16 24 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 25 H 0.05 1.23 7.80 -51.93 -0.40 0.83 16 26 H 0.04 1.04 8.14 -51.93 -0.42 0.62 16 27 H 0.11 2.96 5.95 -51.93 -0.31 2.65 16 28 H 0.27 7.09 8.31 -40.82 -0.34 6.75 16 29 H 0.11 1.27 8.14 -51.93 -0.42 0.84 16 30 H 0.11 1.44 8.14 -51.93 -0.42 1.02 16 31 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.09 0.66 8.14 -51.93 -0.42 0.23 16 33 H 0.04 0.37 8.14 -51.93 -0.42 -0.05 16 LS Contribution 281.94 15.07 4.25 4.25 Total: -1.00 -30.40 281.94 -5.86 -36.26 By element: Atomic # 1 Polarization: 5.98 SS G_CDS: -4.71 Total: 1.27 kcal Atomic # 6 Polarization: -7.18 SS G_CDS: 0.03 Total: -7.15 kcal Atomic # 7 Polarization: -25.13 SS G_CDS: 0.63 Total: -24.50 kcal Atomic # 8 Polarization: -25.16 SS G_CDS: -1.02 Total: -26.18 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.05 kcal Total LS contribution 4.25 Total: 4.25 kcal Total: -30.40 -5.86 -36.26 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001348314939.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.378 kcal (2) G-P(sol) polarization free energy of solvation -30.400 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.778 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.856 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.256 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds