Wall clock time and date at job start Thu Apr 9 2020 12:00:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.46909 * 2 1 4 4 H 1.08996 * 109.47247 * 55.00388 * 3 2 1 5 5 C 1.50698 * 109.46878 * 174.99910 * 3 2 1 6 6 H 1.08000 * 120.00261 * 119.99859 * 5 3 2 7 7 C 1.37876 * 120.00367 * 299.99942 * 5 3 2 8 8 N 1.31518 * 119.99585 * 0.02562 * 7 5 3 9 9 Si 1.86800 * 120.00597 * 180.02562 * 7 5 3 10 10 H 1.48499 * 109.47203 * 89.99843 * 9 7 5 11 11 H 1.48498 * 109.47068 * 210.00229 * 9 7 5 12 12 H 1.48502 * 109.46842 * 330.00166 * 9 7 5 13 13 O 1.45200 * 109.47181 * 295.00005 * 3 2 1 14 14 C 1.34218 * 116.99994 * 90.00284 * 13 3 2 15 15 O 1.20821 * 120.00317 * 359.97438 * 14 13 3 16 16 C 1.50704 * 119.99805 * 179.97438 * 14 13 3 17 17 H 1.08995 * 115.56317 * 34.31469 * 16 14 13 18 18 C 1.52994 * 117.50059 * 248.61679 * 16 14 13 19 19 C 1.52995 * 60.00515 * 252.51338 * 18 16 14 20 20 H 1.08999 * 117.51567 * 107.47800 * 19 18 16 21 21 O 1.42898 * 117.49838 * 252.51041 * 19 18 16 22 22 C 1.42903 * 113.99979 * 218.61753 * 21 19 18 23 23 H 1.09000 * 109.46910 * 60.00319 * 1 2 3 24 24 H 1.09000 * 109.46931 * 179.97438 * 1 2 3 25 25 H 1.08993 * 109.47230 * 299.99850 * 1 2 3 26 26 H 1.09001 * 109.47497 * 240.00013 * 2 1 3 27 27 H 1.09001 * 109.47300 * 120.00043 * 2 1 3 28 28 H 0.97005 * 119.99603 * 180.02562 * 8 7 5 29 29 H 1.09007 * 117.49891 * 145.02282 * 18 16 14 30 30 H 1.09004 * 117.50031 * 0.02562 * 18 16 14 31 31 H 1.09002 * 109.47382 * 300.00227 * 22 21 19 32 32 H 1.09001 * 109.46938 * 180.02562 * 22 21 19 33 33 H 1.09004 * 109.46926 * 60.00334 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5418 1.4443 0.1239 6 1 4.1472 1.8888 -0.6523 7 6 4.1433 0.8784 1.2280 8 7 3.4062 0.3366 2.1729 9 14 6.0049 0.8813 1.3819 10 1 6.4416 2.1142 2.0850 11 1 6.4395 -0.3098 2.1550 12 1 6.6136 0.8417 0.0279 13 8 1.6558 2.0917 -1.2407 14 6 0.4728 2.7254 -1.2559 15 8 -0.2192 2.7370 -0.2656 16 6 0.0075 3.4226 -2.5084 17 1 0.2964 2.9476 -3.4460 18 6 -0.0611 4.9507 -2.4823 19 6 -1.3501 4.1268 -2.4622 20 1 -1.9067 4.0855 -1.5260 21 8 -2.1421 4.1116 -3.6514 22 6 -3.5506 4.1425 -3.4122 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8899 26 1 1.8934 -0.5138 -0.8900 27 1 1.8934 -0.5138 0.8900 28 1 3.8293 -0.0612 2.9498 29 1 0.1827 5.4813 -3.4028 30 1 0.2307 5.4520 -1.5594 31 1 -3.8383 3.2718 -2.8229 32 1 -4.0813 4.1280 -4.3642 33 1 -3.8066 5.0510 -2.8668 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001348314939.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:00:00 Heat of formation + Delta-G solvation = -130.217936 kcal Electronic energy + Delta-G solvation = -16112.529777 eV Core-core repulsion = 13331.762140 eV Total energy + Delta-G solvation = -2780.767637 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 228.119 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.57501 -39.49677 -37.69123 -35.85460 -35.49442 -33.35285 -29.45497 -27.68083 -26.27012 -24.84015 -23.19384 -22.18041 -21.06657 -19.15191 -18.65367 -17.80522 -17.16995 -16.95052 -16.55909 -16.02489 -15.77014 -14.96481 -14.79494 -14.24917 -13.74123 -13.62200 -13.37061 -13.17256 -13.11907 -12.82395 -12.57892 -12.45864 -12.31520 -12.14023 -11.78121 -11.71651 -11.48357 -11.26202 -10.84011 -10.54067 -10.33673 -8.28290 -6.45330 1.19620 1.41519 1.43546 1.54820 1.80079 2.37120 2.64812 2.79451 3.01565 3.58524 3.76366 4.02847 4.08042 4.34854 4.37465 4.40265 4.54240 4.55390 4.59201 4.75989 4.81424 4.84651 4.92683 5.06519 5.19187 5.35924 5.50425 5.65063 5.95608 6.09597 6.11247 6.59185 6.97833 7.26514 8.78559 Molecular weight = 228.12amu Principal moments of inertia in cm(-1) A = 0.046669 B = 0.006126 C = 0.005657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 599.827851 B = 4569.802828 C = 4948.049113 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.130 4.130 3 C 0.224 3.776 4 H 0.009 0.991 5 C -0.552 4.552 6 H 0.065 0.935 7 C 0.019 3.981 8 N -0.914 5.914 9 Si 0.981 3.019 10 H -0.271 1.271 11 H -0.274 1.274 12 H -0.264 1.264 13 O -0.361 6.361 14 C 0.479 3.521 15 O -0.543 6.543 16 C -0.187 4.187 17 H 0.146 0.854 18 C -0.133 4.133 19 C 0.060 3.940 20 H 0.123 0.877 21 O -0.369 6.369 22 C 0.023 3.977 23 H 0.035 0.965 24 H 0.062 0.938 25 H 0.037 0.963 26 H 0.044 0.956 27 H 0.088 0.912 28 H 0.271 0.729 29 H 0.140 0.860 30 H 0.110 0.890 31 H 0.045 0.955 32 H 0.111 0.889 33 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.908 6.427 -9.236 14.351 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.169 4.169 3 C 0.170 3.830 4 H 0.027 0.973 5 C -0.589 4.589 6 H 0.083 0.917 7 C -0.181 4.181 8 N -0.552 5.552 9 Si 0.804 3.196 10 H -0.197 1.197 11 H -0.199 1.199 12 H -0.188 1.188 13 O -0.277 6.277 14 C 0.324 3.676 15 O -0.435 6.435 16 C -0.206 4.206 17 H 0.164 0.836 18 C -0.170 4.170 19 C 0.001 3.999 20 H 0.140 0.860 21 O -0.287 6.287 22 C -0.073 4.073 23 H 0.054 0.946 24 H 0.081 0.919 25 H 0.056 0.944 26 H 0.063 0.937 27 H 0.106 0.894 28 H 0.080 0.920 29 H 0.158 0.842 30 H 0.128 0.872 31 H 0.064 0.936 32 H 0.129 0.871 33 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -9.000 6.294 -8.938 14.160 hybrid contribution 0.677 -0.338 0.769 1.078 sum -8.323 5.956 -8.169 13.095 Atomic orbital electron populations 1.21710 0.96239 1.00658 1.00066 1.21878 0.94530 0.98087 1.02362 1.20422 0.94644 0.89341 0.78545 0.97347 1.21332 0.90498 1.40128 1.06985 0.91718 1.25796 1.04277 0.93750 0.94287 1.70012 1.37473 1.37867 1.09840 0.85205 0.77613 0.78078 0.78661 1.19683 1.19948 1.18835 1.86458 1.35739 1.62845 1.42698 1.23046 0.79479 0.75763 0.89309 1.90569 1.55956 1.59744 1.37212 1.22291 1.04563 0.97924 0.95811 0.83631 1.23623 0.98338 0.88861 1.06142 1.22698 0.86612 1.00661 0.89924 0.85983 1.87785 1.19041 1.93897 1.27999 1.23114 0.78929 1.01243 1.04001 0.94622 0.91908 0.94389 0.93674 0.89389 0.91979 0.84215 0.87203 0.93620 0.87090 0.92204 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.79 8.57 71.98 0.62 -5.17 16 2 C -0.13 -6.71 5.49 30.59 0.17 -6.54 16 3 C 0.22 12.41 2.25 29.85 0.07 12.48 16 4 H 0.01 0.54 7.16 -2.39 -0.02 0.52 16 5 C -0.55 -31.78 8.90 25.60 0.23 -31.55 16 6 H 0.06 3.67 7.81 -2.91 -0.02 3.65 16 7 C 0.02 1.04 5.29 84.65 0.45 1.49 16 8 N -0.91 -52.48 11.29 21.45 0.24 -52.24 16 9 Si 0.98 43.06 29.54 68.60 2.03 45.09 16 10 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 11 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 12 H -0.26 -11.22 7.11 99.48 0.71 -10.52 16 13 O -0.36 -17.95 9.81 -51.30 -0.50 -18.45 16 14 C 0.48 20.53 6.20 71.24 0.44 20.97 16 15 O -0.54 -25.51 13.40 21.98 0.29 -25.22 16 16 C -0.19 -5.88 6.25 -11.54 -0.07 -5.96 16 17 H 0.15 4.23 8.14 -2.39 -0.02 4.21 16 18 C -0.13 -3.25 10.18 30.59 0.31 -2.94 16 19 C 0.06 1.57 5.96 30.59 0.18 1.76 16 20 H 0.12 3.31 7.45 -2.39 -0.02 3.29 16 21 O -0.37 -8.85 10.96 -148.98 -1.63 -10.49 16 22 C 0.02 0.38 10.88 113.37 1.23 1.61 16 23 H 0.03 1.54 6.06 -2.39 -0.01 1.52 16 24 H 0.06 2.40 8.14 -2.39 -0.02 2.38 16 25 H 0.04 1.78 7.80 -2.39 -0.02 1.76 16 26 H 0.04 2.24 8.14 -2.39 -0.02 2.22 16 27 H 0.09 4.90 5.95 -2.39 -0.01 4.88 16 28 H 0.27 14.51 8.31 -92.70 -0.77 13.74 16 29 H 0.14 2.68 8.14 -2.38 -0.02 2.66 16 30 H 0.11 2.71 8.14 -2.38 -0.02 2.70 16 31 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 32 H 0.11 1.33 8.14 -2.39 -0.02 1.31 16 33 H 0.06 0.83 8.14 -2.38 -0.02 0.81 16 Total: -1.00 -66.13 281.94 5.14 -60.99 By element: Atomic # 1 Polarization: 13.08 SS G_CDS: 1.09 Total: 14.17 kcal Atomic # 6 Polarization: -17.48 SS G_CDS: 3.62 Total: -13.86 kcal Atomic # 7 Polarization: -52.48 SS G_CDS: 0.24 Total: -52.24 kcal Atomic # 8 Polarization: -52.31 SS G_CDS: -1.84 Total: -54.15 kcal Atomic # 14 Polarization: 43.06 SS G_CDS: 2.03 Total: 45.09 kcal Total: -66.13 5.14 -60.99 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001348314939.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.227 kcal (2) G-P(sol) polarization free energy of solvation -66.133 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.359 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.991 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds