Wall clock time and date at job start Thu Apr 9 2020 12:00:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.47102 * 2 1 4 4 C 1.50705 * 109.46891 * 119.99567 * 2 1 3 5 5 O 1.20823 * 119.99972 * 239.99869 * 4 2 1 6 6 O 1.34230 * 119.99673 * 59.99982 * 4 2 1 7 7 C 1.45206 * 116.99746 * 179.97438 * 6 4 2 8 8 C 1.53000 * 109.46873 * 180.02562 * 7 6 4 9 9 C 1.50698 * 113.56775 * 51.06917 * 8 7 6 10 10 H 1.08003 * 119.99813 * 249.37049 * 9 8 7 11 11 C 1.37878 * 119.99962 * 69.37747 * 9 8 7 12 12 N 1.31513 * 119.99874 * 5.64411 * 11 9 8 13 13 Si 1.86802 * 119.99945 * 185.64871 * 11 9 8 14 14 H 1.48501 * 109.47060 * 359.97438 * 13 11 9 15 15 H 1.48499 * 109.47192 * 119.99815 * 13 11 9 16 16 H 1.48497 * 109.46901 * 239.99656 * 13 11 9 17 17 C 1.53368 * 114.56299 * 185.34638 * 8 7 6 18 18 O 1.43346 * 88.44965 * 86.60564 * 17 8 7 19 19 C 1.43351 * 88.31960 * 28.14847 * 18 17 8 20 20 H 1.09001 * 109.47705 * 180.02562 * 1 2 3 21 21 H 1.09009 * 109.47392 * 300.00772 * 1 2 3 22 22 H 1.09003 * 109.47099 * 59.99843 * 1 2 3 23 23 H 1.08997 * 109.47497 * 239.99549 * 2 1 3 24 24 H 1.09005 * 109.46897 * 180.02562 * 3 2 1 25 25 H 1.08995 * 109.47284 * 299.99409 * 3 2 1 26 26 H 1.09003 * 109.47610 * 60.00070 * 3 2 1 27 27 H 1.08998 * 109.47157 * 60.00284 * 7 6 4 28 28 H 1.09001 * 109.46677 * 299.99868 * 7 6 4 29 29 H 0.97004 * 119.99772 * 180.02562 * 12 11 9 30 30 H 1.08993 * 113.39284 * 331.70512 * 17 8 7 31 31 H 1.09000 * 113.38932 * 201.50404 * 17 8 7 32 32 H 1.09001 * 113.39135 * 86.75071 * 19 18 17 33 33 H 1.08998 * 113.39503 * 216.90170 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7103 1.2306 5 8 2.7269 -0.1231 2.0259 6 8 1.7079 -1.9954 1.4430 7 6 2.2275 -2.6158 2.6487 8 6 1.7563 -4.0698 2.7178 9 6 2.0242 -4.8505 1.4570 10 1 1.2022 -5.1591 0.8280 11 6 3.3186 -5.1710 1.1064 12 7 4.3094 -4.8937 1.9255 13 14 3.6647 -5.9991 -0.5319 14 1 2.3885 -6.2015 -1.2636 15 1 4.5681 -5.1405 -1.3394 16 1 4.3128 -7.3139 -0.2947 17 6 2.1322 -4.8009 4.0125 18 8 0.9330 -4.2860 4.6055 19 6 0.3486 -4.2570 3.2968 20 1 -0.3634 -1.0276 0.0005 21 1 -0.3634 0.5140 0.8900 22 1 -0.3633 0.5139 -0.8900 23 1 1.8934 -0.5139 -0.8899 24 1 3.1300 1.4424 -0.0005 25 1 1.6768 1.9563 -0.8900 26 1 1.6767 1.9564 0.8900 27 1 1.8640 -2.0738 3.5218 28 1 3.3170 -2.5877 2.6311 29 1 5.2201 -5.1189 1.6787 30 1 3.0422 -4.4201 4.4760 31 1 2.1336 -5.8862 3.9118 32 1 -0.1157 -5.2002 3.0092 33 1 -0.3048 -3.4000 3.1335 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001349058822.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:00:08 Heat of formation + Delta-G solvation = -129.221974 kcal Electronic energy + Delta-G solvation = -16610.971869 eV Core-core repulsion = 13830.247420 eV Total energy + Delta-G solvation = -2780.724449 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 228.119 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.81287 -41.09327 -37.52017 -35.57614 -34.94234 -31.81526 -28.12932 -27.57926 -26.91022 -26.40361 -24.56270 -21.02517 -20.50278 -18.88911 -18.48777 -17.44825 -17.28347 -16.80201 -16.54199 -16.03216 -15.75547 -15.29927 -14.37316 -14.19082 -13.91995 -13.60127 -13.26036 -13.10358 -12.98012 -12.83023 -12.80784 -12.54471 -12.30030 -12.10753 -12.00551 -11.60944 -11.29927 -10.93575 -10.85030 -10.59752 -10.42366 -8.16909 -6.26117 1.27779 1.42269 1.46208 1.56499 1.88046 2.42991 3.13803 3.30563 3.60713 3.89993 4.01049 4.06653 4.18812 4.35159 4.44281 4.59284 4.66231 4.75856 4.77633 4.88738 4.92919 4.93976 5.04727 5.21676 5.26823 5.34211 5.37272 5.40398 5.72100 5.76083 6.18188 6.74512 6.86924 7.41806 8.91704 Molecular weight = 228.12amu Principal moments of inertia in cm(-1) A = 0.020855 B = 0.010471 C = 0.008201 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1342.304532 B = 2673.310224 C = 3413.355032 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.085 4.085 3 C -0.131 4.131 4 C 0.445 3.555 5 O -0.556 6.556 6 O -0.338 6.338 7 C 0.119 3.881 8 C 0.006 3.994 9 C -0.510 4.510 10 H 0.067 0.933 11 C 0.024 3.976 12 N -0.916 5.916 13 Si 0.953 3.047 14 H -0.261 1.261 15 H -0.286 1.286 16 H -0.283 1.283 17 C 0.064 3.936 18 O -0.408 6.408 19 C 0.040 3.960 20 H 0.062 0.938 21 H 0.056 0.944 22 H 0.102 0.898 23 H 0.120 0.880 24 H 0.047 0.953 25 H 0.103 0.897 26 H 0.054 0.946 27 H 0.041 0.959 28 H 0.047 0.953 29 H 0.262 0.738 30 H 0.059 0.941 31 H 0.073 0.927 32 H 0.086 0.914 33 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.702 6.979 -5.806 11.284 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.104 4.104 3 C -0.188 4.188 4 C 0.291 3.709 5 O -0.448 6.448 6 O -0.253 6.253 7 C 0.045 3.955 8 C 0.005 3.995 9 C -0.548 4.548 10 H 0.086 0.914 11 C -0.176 4.176 12 N -0.554 5.554 13 Si 0.779 3.221 14 H -0.185 1.185 15 H -0.212 1.212 16 H -0.209 1.209 17 C -0.012 4.012 18 O -0.327 6.327 19 C -0.037 4.037 20 H 0.081 0.919 21 H 0.075 0.925 22 H 0.121 0.879 23 H 0.138 0.862 24 H 0.067 0.933 25 H 0.122 0.878 26 H 0.073 0.927 27 H 0.060 0.940 28 H 0.065 0.935 29 H 0.071 0.929 30 H 0.078 0.922 31 H 0.091 0.909 32 H 0.104 0.896 33 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -6.407 7.153 -5.252 10.945 hybrid contribution 1.009 -0.590 -0.328 1.214 sum -5.398 6.563 -5.580 10.166 Atomic orbital electron populations 1.21774 0.90232 1.03477 1.04019 1.21246 0.99763 0.96854 0.92553 1.21710 1.01053 0.92409 1.03662 1.24913 0.76823 0.80584 0.88623 1.90574 1.37869 1.67861 1.48530 1.86515 1.68540 1.25826 1.44391 1.22430 0.97636 0.93132 0.82348 1.20511 0.92710 0.90520 0.95745 1.20985 0.92807 1.33855 1.07105 0.91441 1.25664 0.96074 0.96128 0.99773 1.70042 0.99926 1.48436 1.36989 0.85575 0.78418 0.77831 0.80293 1.18456 1.21244 1.20866 1.23495 0.87101 0.98365 0.92287 1.89622 1.30066 1.85099 1.27945 1.23853 0.97033 1.01679 0.81110 0.91883 0.92513 0.87907 0.86219 0.93344 0.87818 0.92671 0.94030 0.93490 0.92878 0.92221 0.90868 0.89631 0.90131 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.94 9.12 71.98 0.66 -2.29 16 2 C -0.09 -2.29 3.36 -11.54 -0.04 -2.33 16 3 C -0.13 -2.99 8.48 71.98 0.61 -2.38 16 4 C 0.45 17.61 7.26 71.24 0.52 18.13 16 5 O -0.56 -25.26 15.73 21.97 0.35 -24.91 16 6 O -0.34 -15.07 9.69 -51.41 -0.50 -15.57 16 7 C 0.12 5.80 4.83 71.98 0.35 6.15 16 8 C 0.01 0.28 0.76 -52.68 -0.04 0.24 16 9 C -0.51 -26.06 8.01 25.60 0.20 -25.86 16 10 H 0.07 3.36 7.82 -2.91 -0.02 3.34 16 11 C 0.02 1.23 5.36 84.66 0.45 1.68 16 12 N -0.92 -50.38 12.09 21.45 0.26 -50.12 16 13 Si 0.95 41.51 29.54 68.60 2.03 43.53 16 14 H -0.26 -10.83 7.11 99.48 0.71 -10.12 16 15 H -0.29 -12.52 7.11 99.48 0.71 -11.81 16 16 H -0.28 -12.17 7.11 99.48 0.71 -11.46 16 17 C 0.06 3.07 7.20 63.84 0.46 3.53 16 18 O -0.41 -18.52 12.57 -148.98 -1.87 -20.39 16 19 C 0.04 1.66 7.89 63.84 0.50 2.17 16 20 H 0.06 1.49 8.11 -2.39 -0.02 1.47 16 21 H 0.06 1.22 8.14 -2.38 -0.02 1.20 16 22 H 0.10 1.47 8.14 -2.39 -0.02 1.46 16 23 H 0.12 2.91 8.14 -2.39 -0.02 2.89 16 24 H 0.05 1.23 8.10 -2.38 -0.02 1.21 16 25 H 0.10 1.56 8.14 -2.39 -0.02 1.54 16 26 H 0.05 1.33 8.10 -2.39 -0.02 1.31 16 27 H 0.04 2.00 7.96 -2.39 -0.02 1.98 16 28 H 0.05 2.58 7.58 -2.39 -0.02 2.56 16 29 H 0.26 13.89 8.31 -92.71 -0.77 13.12 16 30 H 0.06 2.95 8.13 -2.39 -0.02 2.93 16 31 H 0.07 3.47 8.10 -2.39 -0.02 3.45 16 32 H 0.09 3.33 8.10 -2.39 -0.02 3.31 16 33 H 0.08 3.08 8.13 -2.39 -0.02 3.06 16 Total: -1.00 -61.99 284.20 5.01 -56.97 By element: Atomic # 1 Polarization: 10.36 SS G_CDS: 1.08 Total: 11.44 kcal Atomic # 6 Polarization: -4.63 SS G_CDS: 3.68 Total: -0.95 kcal Atomic # 7 Polarization: -50.38 SS G_CDS: 0.26 Total: -50.12 kcal Atomic # 8 Polarization: -58.85 SS G_CDS: -2.03 Total: -60.88 kcal Atomic # 14 Polarization: 41.51 SS G_CDS: 2.03 Total: 43.53 kcal Total: -61.99 5.01 -56.97 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001349058822.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.249 kcal (2) G-P(sol) polarization free energy of solvation -61.986 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.235 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.013 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.973 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.222 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds