Wall clock time and date at job start Thu Apr 9 2020 12:00:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86793 * 119.99669 * 2 1 4 4 H 1.48504 * 109.47092 * 269.99391 * 3 2 1 5 5 H 1.48498 * 109.47340 * 29.99642 * 3 2 1 6 6 H 1.48501 * 109.47391 * 149.99714 * 3 2 1 7 7 C 1.37874 * 119.99835 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99766 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00270 * 0.02562 * 7 2 1 10 10 N 1.46506 * 109.46928 * 180.02562 * 9 7 2 11 11 C 1.34777 * 119.99873 * 180.02562 * 10 9 7 12 12 O 1.21284 * 119.99754 * 359.97438 * 11 10 9 13 13 C 1.50696 * 120.00137 * 179.97438 * 11 10 9 14 14 H 1.09006 * 109.39735 * 320.17832 * 13 11 10 15 15 C 1.53138 * 109.39795 * 79.99718 * 13 11 10 16 16 C 1.53479 * 108.36477 * 168.11722 * 15 13 11 17 17 O 1.45433 * 108.10820 * 298.27246 * 16 15 13 18 18 C 1.34207 * 117.18733 * 46.43437 * 17 16 15 19 19 O 1.21508 * 118.46199 * 163.20347 * 18 17 16 20 20 N 1.33732 * 123.07966 * 343.21668 * 18 17 16 21 21 H 0.96992 * 120.00038 * 0.02562 * 1 2 3 22 22 H 1.09000 * 109.47247 * 59.99949 * 9 7 2 23 23 H 1.09001 * 109.47358 * 299.99375 * 9 7 2 24 24 H 0.96995 * 120.00050 * 359.72380 * 10 9 7 25 25 H 1.08999 * 109.68095 * 287.83086 * 15 13 11 26 26 H 1.08993 * 109.68207 * 48.39485 * 15 13 11 27 27 H 1.09000 * 109.73950 * 57.92084 * 16 15 13 28 28 H 1.08994 * 109.73863 * 178.57156 * 16 15 13 29 29 H 0.96999 * 118.52190 * 182.30155 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4465 2.6527 0.6999 6 1 3.5467 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 7 2.2032 -3.6127 0.0018 11 6 1.7540 -4.8834 0.0015 12 8 0.5615 -5.1050 0.0006 13 6 2.7332 -6.0288 0.0022 14 1 3.5692 -5.7908 -0.6557 15 6 3.2535 -6.2523 1.4250 16 6 4.0047 -7.5902 1.4606 17 8 3.0634 -8.6463 1.1233 18 6 2.2680 -8.4427 0.0617 19 8 1.7036 -9.3993 -0.4309 20 7 2.0677 -7.2363 -0.4796 21 1 -0.4850 0.8400 -0.0004 22 1 0.6248 -2.5571 -0.8897 23 1 0.6241 -2.5568 0.8903 24 1 3.1568 -3.4354 -0.0016 25 1 3.9307 -5.4435 1.6995 26 1 2.4157 -6.2829 2.1216 27 1 4.8172 -7.5756 0.7341 28 1 4.4071 -7.7600 2.4592 29 1 1.4524 -7.1598 -1.2256 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001351531884.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:00:20 Heat of formation + Delta-G solvation = -121.997145 kcal Electronic energy + Delta-G solvation = -15660.282538 eV Core-core repulsion = 12776.331039 eV Total energy + Delta-G solvation = -2883.951500 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 228.094 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.14798 -39.02522 -37.16429 -35.36821 -34.40486 -32.55935 -31.63610 -28.25892 -26.42808 -24.19214 -22.72833 -20.37036 -20.07066 -18.39396 -18.00805 -17.29982 -16.23257 -15.82311 -15.36897 -14.86551 -14.82150 -14.61511 -14.34265 -13.73466 -13.21553 -12.55120 -12.31349 -12.08272 -11.93551 -11.66087 -11.09990 -10.98571 -10.85472 -10.56963 -10.43341 -9.73761 -9.53778 -9.04606 -8.87926 -8.12353 -6.27896 -4.36184 2.51882 2.68894 2.96597 3.16657 3.22948 3.25011 3.35469 3.72243 4.22896 4.28880 4.46698 4.63353 4.82966 5.03050 5.08618 5.16814 5.23977 5.65105 5.82897 6.74376 7.10901 7.15693 7.34564 7.48675 7.56811 7.82637 8.07704 8.36141 8.58391 8.82017 9.30748 10.82113 Molecular weight = 228.09amu Principal moments of inertia in cm(-1) A = 0.060413 B = 0.005291 C = 0.005001 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 463.367500 B = 5290.526790 C = 5597.267079 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C 0.065 3.935 3 Si 0.905 3.095 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.272 1.272 7 C -0.547 4.547 8 H 0.064 0.936 9 C 0.249 3.751 10 N -0.702 5.702 11 C 0.489 3.511 12 O -0.539 6.539 13 C 0.115 3.885 14 H 0.102 0.898 15 C -0.166 4.166 16 C 0.063 3.937 17 O -0.345 6.345 18 C 0.663 3.337 19 O -0.538 6.538 20 N -0.708 5.708 21 H 0.267 0.733 22 H 0.029 0.971 23 H 0.029 0.971 24 H 0.392 0.608 25 H 0.112 0.888 26 H 0.094 0.906 27 H 0.081 0.919 28 H 0.119 0.881 29 H 0.424 0.576 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.120 -8.772 2.076 14.315 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C -0.140 4.140 3 Si 0.732 3.268 4 H -0.204 1.204 5 H -0.210 1.210 6 H -0.197 1.197 7 C -0.585 4.585 8 H 0.082 0.918 9 C 0.128 3.872 10 N -0.351 5.351 11 C 0.271 3.729 12 O -0.417 6.417 13 C 0.005 3.995 14 H 0.120 0.880 15 C -0.204 4.204 16 C -0.011 4.011 17 O -0.256 6.256 18 C 0.415 3.585 19 O -0.423 6.423 20 N -0.375 5.375 21 H 0.077 0.923 22 H 0.047 0.953 23 H 0.047 0.953 24 H 0.225 0.775 25 H 0.131 0.869 26 H 0.113 0.887 27 H 0.099 0.901 28 H 0.137 0.863 29 H 0.264 0.736 Dipole moment (debyes) X Y Z Total from point charges 9.987 -9.485 2.206 13.949 hybrid contribution 0.669 1.494 -0.295 1.663 sum 10.656 -7.991 1.910 13.456 Atomic orbital electron populations 1.69967 1.06145 1.27525 1.48424 1.24958 0.94929 0.99547 0.94533 0.86392 0.79576 0.82517 0.78292 1.20400 1.20952 1.19718 1.21178 0.93263 0.90284 1.53824 0.91781 1.19193 0.88216 0.81727 0.98032 1.46468 1.11433 1.05750 1.71425 1.20352 0.89346 0.84414 0.78815 1.90735 1.16282 1.84518 1.50130 1.21144 0.95525 0.85638 0.97151 0.88048 1.22524 1.02895 0.99339 0.95675 1.23500 0.89821 0.84361 1.03454 1.86699 1.48930 1.44917 1.45065 1.17740 0.79180 0.83205 0.78361 1.91028 1.51701 1.40272 1.59298 1.45108 1.49376 1.05064 1.37984 0.92292 0.95263 0.95274 0.77458 0.86922 0.88717 0.90106 0.86298 0.73629 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.02 13.29 55.43 0.74 -24.29 15 2 C 0.06 1.70 5.46 -17.82 -0.10 1.61 15 3 Si 0.91 19.85 29.54 -169.99 -5.02 14.83 15 4 H -0.28 -6.05 7.11 56.52 0.40 -5.65 15 5 H -0.28 -6.25 7.11 56.52 0.40 -5.85 15 6 H -0.27 -5.76 7.11 56.52 0.40 -5.36 15 7 C -0.55 -13.85 9.28 -34.44 -0.32 -14.17 15 8 H 0.06 1.49 7.60 -52.48 -0.40 1.09 15 9 C 0.25 6.09 5.43 -5.19 -0.03 6.06 15 10 N -0.70 -12.75 5.55 -61.47 -0.34 -13.09 15 11 C 0.49 8.43 6.99 -10.99 -0.08 8.36 15 12 O -0.54 -11.93 16.41 5.55 0.09 -11.84 15 13 C 0.11 1.36 3.53 -69.25 -0.24 1.12 15 14 H 0.10 0.88 8.14 -51.93 -0.42 0.46 15 15 C -0.17 -1.54 5.56 -26.41 -0.15 -1.69 15 16 C 0.06 0.50 7.20 37.41 0.27 0.77 15 17 O -0.34 -4.57 10.50 -39.27 -0.41 -4.98 15 18 C 0.66 10.28 8.55 53.59 0.46 10.74 15 19 O -0.54 -10.33 17.95 -19.40 -0.35 -10.67 15 20 N -0.71 -9.79 4.85 -60.48 -0.29 -10.08 15 21 H 0.27 7.12 8.31 -40.82 -0.34 6.78 15 22 H 0.03 0.80 8.14 -51.93 -0.42 0.38 15 23 H 0.03 0.80 8.14 -51.93 -0.42 0.38 15 24 H 0.39 5.75 8.32 -40.82 -0.34 5.41 15 25 H 0.11 0.74 8.14 -51.93 -0.42 0.32 15 26 H 0.09 1.07 8.09 -51.93 -0.42 0.65 15 27 H 0.08 0.48 8.14 -51.93 -0.42 0.06 15 28 H 0.12 0.64 8.14 -51.93 -0.42 0.21 15 29 H 0.42 6.07 8.52 -40.82 -0.35 5.72 15 LS Contribution 261.08 15.07 3.93 3.93 Total: -1.00 -33.78 261.08 -5.02 -38.79 By element: Atomic # 1 Polarization: 7.77 SS G_CDS: -3.18 Total: 4.59 kcal Atomic # 6 Polarization: 12.98 SS G_CDS: -0.19 Total: 12.80 kcal Atomic # 7 Polarization: -47.56 SS G_CDS: 0.10 Total: -47.46 kcal Atomic # 8 Polarization: -26.82 SS G_CDS: -0.67 Total: -27.49 kcal Atomic # 14 Polarization: 19.85 SS G_CDS: -5.02 Total: 14.83 kcal Total LS contribution 3.93 Total: 3.93 kcal Total: -33.78 -5.02 -38.79 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001351531884.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.204 kcal (2) G-P(sol) polarization free energy of solvation -33.776 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.980 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.017 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.793 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.997 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds