Wall clock time and date at job start Thu Apr 9 2020 12:00:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86793 * 119.99669 * 2 1 4 4 H 1.48504 * 109.47092 * 269.99391 * 3 2 1 5 5 H 1.48498 * 109.47340 * 29.99642 * 3 2 1 6 6 H 1.48501 * 109.47391 * 149.99714 * 3 2 1 7 7 C 1.37874 * 119.99835 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99766 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00270 * 0.02562 * 7 2 1 10 10 N 1.46506 * 109.46928 * 180.02562 * 9 7 2 11 11 C 1.34777 * 119.99873 * 180.02562 * 10 9 7 12 12 O 1.21284 * 119.99754 * 359.97438 * 11 10 9 13 13 C 1.50696 * 120.00137 * 179.97438 * 11 10 9 14 14 H 1.09006 * 109.39735 * 320.17832 * 13 11 10 15 15 C 1.53138 * 109.39795 * 79.99718 * 13 11 10 16 16 C 1.53479 * 108.36477 * 168.11722 * 15 13 11 17 17 O 1.45433 * 108.10820 * 298.27246 * 16 15 13 18 18 C 1.34207 * 117.18733 * 46.43437 * 17 16 15 19 19 O 1.21508 * 118.46199 * 163.20347 * 18 17 16 20 20 N 1.33732 * 123.07966 * 343.21668 * 18 17 16 21 21 H 0.96992 * 120.00038 * 0.02562 * 1 2 3 22 22 H 1.09000 * 109.47247 * 59.99949 * 9 7 2 23 23 H 1.09001 * 109.47358 * 299.99375 * 9 7 2 24 24 H 0.96995 * 120.00050 * 359.72380 * 10 9 7 25 25 H 1.08999 * 109.68095 * 287.83086 * 15 13 11 26 26 H 1.08993 * 109.68207 * 48.39485 * 15 13 11 27 27 H 1.09000 * 109.73950 * 57.92084 * 16 15 13 28 28 H 1.08994 * 109.73863 * 178.57156 * 16 15 13 29 29 H 0.96999 * 118.52190 * 182.30155 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4465 2.6527 0.6999 6 1 3.5467 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 7 2.2032 -3.6127 0.0018 11 6 1.7540 -4.8834 0.0015 12 8 0.5615 -5.1050 0.0006 13 6 2.7332 -6.0288 0.0022 14 1 3.5692 -5.7908 -0.6557 15 6 3.2535 -6.2523 1.4250 16 6 4.0047 -7.5902 1.4606 17 8 3.0634 -8.6463 1.1233 18 6 2.2680 -8.4427 0.0617 19 8 1.7036 -9.3993 -0.4309 20 7 2.0677 -7.2363 -0.4796 21 1 -0.4850 0.8400 -0.0004 22 1 0.6248 -2.5571 -0.8897 23 1 0.6241 -2.5568 0.8903 24 1 3.1568 -3.4354 -0.0016 25 1 3.9307 -5.4435 1.6995 26 1 2.4157 -6.2829 2.1216 27 1 4.8172 -7.5756 0.7341 28 1 4.4071 -7.7600 2.4592 29 1 1.4524 -7.1598 -1.2256 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001351531884.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:00:19 Heat of formation + Delta-G solvation = -150.817204 kcal Electronic energy + Delta-G solvation = -15661.532270 eV Core-core repulsion = 12776.331039 eV Total energy + Delta-G solvation = -2885.201231 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 228.094 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.24397 -40.47947 -38.30604 -36.58077 -36.10323 -34.41100 -32.64475 -29.84016 -27.78686 -25.22671 -24.54028 -21.79952 -21.07536 -19.51170 -19.37894 -18.54352 -17.81588 -17.10759 -16.96358 -16.25455 -16.17251 -15.76202 -15.52012 -14.95857 -14.71554 -14.05644 -13.92665 -13.46343 -13.07886 -12.91550 -12.72073 -12.66782 -12.21827 -11.85541 -11.65064 -11.48305 -11.04409 -10.80483 -10.35148 -9.90182 -8.28445 -6.44845 1.38594 1.45470 1.47453 1.49950 1.58601 1.71231 2.22699 2.41447 2.56195 3.07566 3.41101 3.59086 3.84056 3.91741 4.26650 4.32742 4.65622 4.90558 4.94031 5.12163 5.23440 5.43983 5.59069 5.65135 5.84095 6.50903 6.65706 6.77917 6.93704 7.23205 7.39749 8.83503 Molecular weight = 228.09amu Principal moments of inertia in cm(-1) A = 0.060413 B = 0.005291 C = 0.005001 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 463.367500 B = 5290.526790 C = 5597.267079 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.003 3.997 3 Si 0.983 3.017 4 H -0.273 1.273 5 H -0.289 1.289 6 H -0.251 1.251 7 C -0.552 4.552 8 H 0.091 0.909 9 C 0.264 3.736 10 N -0.691 5.691 11 C 0.489 3.511 12 O -0.594 6.594 13 C 0.126 3.874 14 H 0.152 0.848 15 C -0.164 4.164 16 C 0.060 3.940 17 O -0.358 6.358 18 C 0.666 3.334 19 O -0.586 6.586 20 N -0.706 5.706 21 H 0.268 0.732 22 H -0.011 1.011 23 H -0.011 1.011 24 H 0.415 0.585 25 H 0.151 0.849 26 H 0.069 0.931 27 H 0.114 0.886 28 H 0.153 0.847 29 H 0.419 0.581 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.768 -8.198 2.570 17.085 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.197 4.197 3 Si 0.806 3.194 4 H -0.199 1.199 5 H -0.215 1.215 6 H -0.175 1.175 7 C -0.590 4.590 8 H 0.109 0.891 9 C 0.141 3.859 10 N -0.342 5.342 11 C 0.274 3.726 12 O -0.475 6.475 13 C 0.018 3.982 14 H 0.169 0.831 15 C -0.202 4.202 16 C -0.012 4.012 17 O -0.269 6.269 18 C 0.419 3.581 19 O -0.475 6.475 20 N -0.372 5.372 21 H 0.076 0.924 22 H 0.006 0.994 23 H 0.007 0.993 24 H 0.252 0.748 25 H 0.169 0.831 26 H 0.088 0.912 27 H 0.132 0.868 28 H 0.170 0.830 29 H 0.257 0.743 Dipole moment (debyes) X Y Z Total from point charges 13.725 -8.914 2.722 16.590 hybrid contribution -0.467 1.301 -0.406 1.441 sum 13.258 -7.612 2.315 15.462 Atomic orbital electron populations 1.70138 1.08352 1.28521 1.50119 1.26052 0.95687 1.03939 0.94004 0.85184 0.78636 0.77097 0.78477 1.19850 1.21501 1.17470 1.21628 0.94542 0.90258 1.52583 0.89145 1.18595 0.88727 0.84236 0.94324 1.46071 1.11605 1.04844 1.71638 1.21320 0.89582 0.85165 0.76553 1.90719 1.19328 1.85349 1.52139 1.21358 0.94378 0.82160 1.00333 0.83105 1.22632 1.02953 1.01773 0.92828 1.24008 0.89008 0.81838 1.06389 1.86675 1.49414 1.47192 1.43611 1.17766 0.79059 0.82859 0.78390 1.90984 1.53639 1.41781 1.61098 1.45165 1.49229 1.05328 1.37507 0.92369 0.99350 0.99282 0.74821 0.83071 0.91204 0.86831 0.82972 0.74261 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.21 13.29 21.45 0.28 -53.93 15 2 C 0.00 0.15 5.46 84.65 0.46 0.61 15 3 Si 0.98 39.88 29.54 68.60 2.03 41.91 15 4 H -0.27 -10.80 7.11 99.48 0.71 -10.09 15 5 H -0.29 -11.88 7.11 99.48 0.71 -11.18 15 6 H -0.25 -9.27 7.11 99.48 0.71 -8.56 15 7 C -0.55 -27.55 9.28 25.60 0.24 -27.31 15 8 H 0.09 3.93 7.60 -2.91 -0.02 3.91 15 9 C 0.26 13.26 5.43 85.63 0.46 13.72 15 10 N -0.69 -24.35 5.55 -466.78 -2.59 -26.94 15 11 C 0.49 16.54 6.99 87.66 0.61 17.15 15 12 O -0.59 -27.22 16.41 -3.04 -0.05 -27.27 15 13 C 0.13 2.63 3.53 44.37 0.16 2.78 15 14 H 0.15 1.82 8.14 -2.38 -0.02 1.80 15 15 C -0.16 -2.42 5.56 30.80 0.17 -2.25 15 16 C 0.06 0.69 7.20 72.14 0.52 1.21 15 17 O -0.36 -8.71 10.50 -51.13 -0.54 -9.25 15 18 C 0.67 20.14 8.55 129.95 1.11 21.25 15 19 O -0.59 -22.85 17.95 19.94 0.36 -22.49 15 20 N -0.71 -18.77 4.85 -577.03 -2.80 -21.57 15 21 H 0.27 14.62 8.31 -92.71 -0.77 13.85 15 22 H -0.01 -0.66 8.14 -2.39 -0.02 -0.68 15 23 H -0.01 -0.62 8.14 -2.39 -0.02 -0.64 15 24 H 0.41 10.79 8.32 -92.71 -0.77 10.01 15 25 H 0.15 1.12 8.14 -2.39 -0.02 1.10 15 26 H 0.07 1.44 8.09 -2.39 -0.02 1.42 15 27 H 0.11 0.66 8.14 -2.39 -0.02 0.65 15 28 H 0.15 0.82 8.14 -2.39 -0.02 0.80 15 29 H 0.42 12.05 8.52 -92.71 -0.79 11.26 15 Total: -1.00 -78.78 261.08 0.06 -78.72 By element: Atomic # 1 Polarization: 14.02 SS G_CDS: -0.37 Total: 13.65 kcal Atomic # 6 Polarization: 23.44 SS G_CDS: 3.74 Total: 27.17 kcal Atomic # 7 Polarization: -97.33 SS G_CDS: -5.10 Total: -102.43 kcal Atomic # 8 Polarization: -58.79 SS G_CDS: -0.23 Total: -59.01 kcal Atomic # 14 Polarization: 39.88 SS G_CDS: 2.03 Total: 41.91 kcal Total: -78.78 0.06 -78.72 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001351531884.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.099 kcal (2) G-P(sol) polarization free energy of solvation -78.777 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.877 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.059 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.718 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.817 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds