Wall clock time and date at job start Thu Apr 9 2020 12:00:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86799 * 120.00030 * 2 1 4 4 H 1.48497 * 109.47320 * 269.99969 * 3 2 1 5 5 H 1.48495 * 109.47173 * 30.00213 * 3 2 1 6 6 H 1.48509 * 109.47110 * 150.00070 * 3 2 1 7 7 C 1.37880 * 119.99976 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99703 * 359.97438 * 7 2 1 9 9 C 1.50696 * 119.99722 * 179.97438 * 7 2 1 10 10 N 1.46904 * 109.46800 * 180.02562 * 9 7 2 11 11 C 1.46899 * 111.00029 * 180.02562 * 10 9 7 12 12 C 1.50703 * 109.47107 * 179.97438 * 11 10 9 13 13 C 1.38536 * 120.78197 * 259.71951 * 12 11 10 14 14 C 1.38508 * 119.16325 * 179.78173 * 13 12 11 15 15 F 1.35104 * 119.62305 * 180.27295 * 14 13 12 16 16 N 1.32038 * 120.75610 * 0.50046 * 14 13 12 17 17 C 1.31905 * 121.71428 * 359.75183 * 16 14 13 18 18 C 1.38371 * 120.76026 * 359.97438 * 17 16 14 19 19 F 1.35098 * 120.41208 * 179.97438 * 18 17 16 20 20 H 0.97008 * 119.99801 * 359.97438 * 1 2 3 21 21 H 1.08995 * 109.47455 * 60.00159 * 9 7 2 22 22 H 1.09003 * 109.47449 * 299.99392 * 9 7 2 23 23 H 1.00908 * 110.99583 * 303.94914 * 10 9 7 24 24 H 1.09002 * 109.47043 * 299.99792 * 11 10 9 25 25 H 1.09001 * 109.47354 * 59.99854 * 11 10 9 26 26 H 1.08000 * 120.42065 * 0.02562 * 13 12 11 27 27 H 1.08002 * 119.62192 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4401 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1940 -0.0011 10 7 4.0012 -2.5790 -0.0022 11 6 5.4696 -2.6183 -0.0022 12 6 5.9339 -4.0520 -0.0027 13 6 6.3543 -4.6615 1.1681 14 6 6.7698 -5.9823 1.1300 15 9 7.1765 -6.5875 2.2673 16 7 6.7773 -6.6552 -0.0060 17 6 6.3887 -6.1053 -1.1403 18 6 5.9554 -4.7918 -1.1780 19 9 5.5594 -4.2355 -2.3437 20 1 -0.4850 0.8401 0.0004 21 1 3.8752 -0.6804 0.8888 22 1 3.8745 -0.6801 -0.8912 23 1 3.6260 -3.0958 0.7790 24 1 5.8466 -2.1136 -0.8918 25 1 5.8466 -2.1150 0.8882 26 1 6.3543 -4.1150 2.0996 27 1 6.4090 -6.6870 -2.0500 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001474480926.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:00:25 Heat of formation + Delta-G solvation = -71.486400 kcal Electronic energy + Delta-G solvation = -14941.827626 eV Core-core repulsion = 11948.978921 eV Total energy + Delta-G solvation = -2992.848705 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 228.077 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -50.13952 -49.98739 -41.12445 -37.55038 -34.99336 -33.62276 -31.57841 -29.83406 -26.74600 -24.83893 -23.39303 -22.92935 -19.22658 -19.19463 -18.64578 -18.50172 -17.40827 -16.77963 -16.54613 -16.06810 -15.71216 -15.54232 -15.38584 -14.87860 -14.54378 -14.41011 -13.93773 -13.85561 -13.33739 -13.13625 -12.58943 -12.46248 -11.87909 -11.55245 -11.00208 -10.95878 -10.81353 -9.92198 -9.25881 -8.30306 -6.35832 -0.38157 -0.25541 1.37140 1.38498 1.48936 2.22696 2.34295 2.37219 2.88817 3.04118 3.13059 3.49693 3.60192 3.62899 4.16775 4.26999 4.39806 4.59595 4.70092 4.72969 4.89418 5.03984 5.41632 5.49512 5.85333 6.32043 6.46107 6.55505 6.72838 7.28946 8.86428 Molecular weight = 228.08amu Principal moments of inertia in cm(-1) A = 0.041291 B = 0.005731 C = 0.005463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 677.945447 B = 4884.821572 C = 5123.897105 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.948 5.948 2 C 0.007 3.993 3 Si 0.953 3.047 4 H -0.267 1.267 5 H -0.283 1.283 6 H -0.244 1.244 7 C -0.531 4.531 8 H 0.035 0.965 9 C 0.176 3.824 10 N -0.685 5.685 11 C 0.093 3.907 12 C -0.046 4.046 13 C -0.148 4.148 14 C 0.286 3.714 15 F -0.111 7.111 16 N -0.506 5.506 17 C 0.116 3.884 18 C 0.053 3.947 19 F -0.124 7.124 20 H 0.268 0.732 21 H -0.001 1.001 22 H 0.028 0.972 23 H 0.340 0.660 24 H 0.087 0.913 25 H 0.066 0.934 26 H 0.179 0.821 27 H 0.208 0.792 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.868 -7.908 0.799 18.647 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.589 5.589 2 C -0.191 4.191 3 Si 0.776 3.224 4 H -0.192 1.192 5 H -0.209 1.209 6 H -0.167 1.167 7 C -0.569 4.569 8 H 0.053 0.947 9 C 0.047 3.953 10 N -0.316 5.316 11 C -0.036 4.036 12 C -0.055 4.055 13 C -0.170 4.170 14 C 0.133 3.867 15 F -0.090 7.090 16 N -0.220 5.220 17 C -0.042 4.042 18 C 0.031 3.969 19 F -0.102 7.102 20 H 0.077 0.923 21 H 0.016 0.984 22 H 0.046 0.954 23 H 0.158 0.842 24 H 0.105 0.895 25 H 0.084 0.916 26 H 0.196 0.804 27 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges 16.956 -8.712 0.147 19.064 hybrid contribution -0.409 1.644 0.837 1.890 sum 16.546 -7.068 0.984 18.020 Atomic orbital electron populations 1.70062 1.08330 1.28299 1.52162 1.25918 0.95650 1.03476 0.94053 0.85626 0.79468 0.78053 0.79218 1.19236 1.20870 1.16715 1.21313 0.91447 0.93392 1.50739 0.94666 1.19782 0.93636 0.86384 0.95450 1.60400 1.05433 1.15571 1.50245 1.20913 0.89238 0.90236 1.03219 1.20360 0.95976 0.97436 0.91703 1.21838 1.00968 0.93582 1.00578 1.18184 0.97547 0.88684 0.82322 1.91631 1.87684 1.84042 1.45667 1.67061 1.17544 1.38978 0.98432 1.22983 0.94125 0.90681 0.96399 1.18789 1.01743 0.93857 0.82556 1.91557 1.88168 1.85340 1.45160 0.92335 0.98375 0.95368 0.84239 0.89450 0.91562 0.80376 0.77521 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.76 13.96 21.45 0.30 -58.46 15 2 C 0.01 0.38 5.47 84.66 0.46 0.84 15 3 Si 0.95 42.65 27.47 68.60 1.88 44.53 15 4 H -0.27 -11.58 7.11 99.48 0.71 -10.87 15 5 H -0.28 -12.46 7.11 99.48 0.71 -11.76 15 6 H -0.24 -9.87 6.54 99.48 0.65 -9.22 15 7 C -0.53 -30.11 9.87 25.60 0.25 -29.86 15 8 H 0.04 2.24 8.06 -2.91 -0.02 2.22 15 9 C 0.18 7.92 4.51 85.55 0.39 8.31 15 10 N -0.69 -26.06 6.48 -521.98 -3.38 -29.44 15 11 C 0.09 2.61 5.61 85.56 0.48 3.09 15 12 C -0.05 -1.13 5.43 -19.64 -0.11 -1.24 15 13 C -0.15 -3.13 9.75 22.41 0.22 -2.91 15 14 C 0.29 6.64 8.41 84.73 0.71 7.35 15 15 F -0.11 -2.58 17.29 44.97 0.78 -1.80 15 16 N -0.51 -12.17 10.37 -196.76 -2.04 -14.22 15 17 C 0.12 2.45 11.17 84.71 0.95 3.39 15 18 C 0.05 1.31 7.29 22.46 0.16 1.48 15 19 F -0.12 -3.51 16.80 44.97 0.76 -2.75 15 20 H 0.27 15.42 8.31 -92.70 -0.77 14.65 15 21 H 0.00 -0.06 7.20 -2.39 -0.02 -0.08 15 22 H 0.03 1.27 7.57 -2.39 -0.02 1.25 15 23 H 0.34 12.66 8.71 -89.69 -0.78 11.88 15 24 H 0.09 2.47 8.02 -2.39 -0.02 2.45 15 25 H 0.07 1.60 8.04 -2.39 -0.02 1.58 15 26 H 0.18 2.86 8.06 -2.91 -0.02 2.84 15 27 H 0.21 2.94 8.06 -2.91 -0.02 2.91 15 Total: -1.00 -66.03 252.65 2.18 -63.85 By element: Atomic # 1 Polarization: 7.47 SS G_CDS: 0.37 Total: 7.84 kcal Atomic # 6 Polarization: -13.07 SS G_CDS: 3.52 Total: -9.55 kcal Atomic # 7 Polarization: -97.00 SS G_CDS: -5.12 Total: -102.12 kcal Atomic # 9 Polarization: -6.09 SS G_CDS: 1.53 Total: -4.56 kcal Atomic # 14 Polarization: 42.65 SS G_CDS: 1.88 Total: 44.53 kcal Total: -66.03 2.18 -63.85 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001474480926.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.632 kcal (2) G-P(sol) polarization free energy of solvation -66.032 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.664 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.178 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.854 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.486 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds