Wall clock time and date at job start Thu Apr 9 2020 12:00:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52996 * 109.47293 * 2 1 4 4 C 1.50704 * 109.47281 * 179.97438 * 3 2 1 5 5 O 1.20825 * 120.00059 * 0.02562 * 4 3 2 6 6 O 1.34224 * 119.99846 * 179.97438 * 4 3 2 7 7 C 1.45202 * 116.99855 * 180.02562 * 6 4 3 8 8 C 1.53001 * 109.47245 * 180.02562 * 7 6 4 9 9 C 1.50704 * 113.56706 * 51.06516 * 8 7 6 10 10 H 1.07993 * 120.00242 * 249.38046 * 9 8 7 11 11 C 1.37873 * 119.99636 * 69.38098 * 9 8 7 12 12 N 1.31514 * 120.00582 * 5.64649 * 11 9 8 13 13 Si 1.86797 * 119.99996 * 185.64663 * 11 9 8 14 14 H 1.48507 * 109.47111 * 59.99698 * 13 11 9 15 15 H 1.48496 * 109.47578 * 179.97438 * 13 11 9 16 16 H 1.48503 * 109.47165 * 300.00294 * 13 11 9 17 17 C 1.53361 * 114.56863 * 185.34434 * 8 7 6 18 18 O 1.43355 * 88.49754 * 86.62848 * 17 8 7 19 19 C 1.43349 * 88.31764 * 28.12872 * 18 17 8 20 20 H 1.08994 * 109.47456 * 300.00129 * 1 2 3 21 21 H 1.09003 * 109.47091 * 60.00229 * 1 2 3 22 22 H 1.09002 * 109.47167 * 179.97438 * 1 2 3 23 23 H 1.09000 * 109.47044 * 239.99795 * 2 1 3 24 24 H 1.09003 * 109.47091 * 119.99771 * 2 1 3 25 25 H 1.09000 * 109.47242 * 59.99917 * 3 2 1 26 26 H 1.08998 * 109.47331 * 299.99934 * 3 2 1 27 27 H 1.08995 * 109.47123 * 60.00436 * 7 6 4 28 28 H 1.09005 * 109.46990 * 300.00379 * 7 6 4 29 29 H 0.97000 * 120.00757 * 180.02562 * 12 11 9 30 30 H 1.09006 * 113.39201 * 331.70916 * 17 8 7 31 31 H 1.09003 * 113.39465 * 201.55390 * 17 8 7 32 32 H 1.09000 * 113.38962 * 86.74961 * 19 18 17 33 33 H 1.09003 * 113.38921 * 216.90361 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5470 1.4424 0.0006 5 8 4.1511 0.3961 0.0006 6 8 4.2181 2.6049 0.0002 7 6 5.6681 2.5289 0.0003 8 6 6.2530 3.9427 0.0004 9 6 5.6811 4.8312 1.0750 10 1 5.0388 5.6572 0.8075 11 6 5.9778 4.5895 2.3995 12 7 6.8462 3.6550 2.7190 13 14 5.1463 5.5894 3.7405 14 1 3.6758 5.3975 3.6613 15 1 5.6331 5.1379 5.0687 16 1 5.4682 7.0275 3.5573 17 6 7.7799 4.0011 -0.1294 18 8 7.6224 3.9666 -1.5538 19 6 6.3451 4.5951 -1.3855 20 1 -0.3634 0.5138 0.8899 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 1.8933 -0.5139 -0.8900 24 1 1.8933 -0.5138 0.8900 25 1 1.6766 1.9563 0.8900 26 1 1.6767 1.9563 -0.8900 27 1 6.0041 1.9965 -0.8895 28 1 6.0040 1.9970 0.8905 29 1 7.0547 3.4846 3.6509 30 1 8.2824 3.1209 0.2719 31 1 8.2100 4.9337 0.2360 32 1 6.3998 5.6831 -1.3481 33 1 5.5905 4.2359 -2.0853 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001515955822.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:00:26 Heat of formation + Delta-G solvation = -131.822057 kcal Electronic energy + Delta-G solvation = -16323.412196 eV Core-core repulsion = 13542.574999 eV Total energy + Delta-G solvation = -2780.837197 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 228.119 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.77789 -41.02011 -37.52915 -35.38345 -34.95438 -31.87899 -29.39131 -27.22034 -26.88348 -26.25218 -23.21874 -21.32125 -20.55512 -18.87417 -18.37983 -17.63878 -17.24427 -16.91912 -16.47274 -16.02747 -15.88044 -15.60889 -14.45637 -14.22941 -13.99646 -13.62019 -13.22022 -13.03408 -12.87457 -12.77983 -12.69355 -12.52805 -12.36111 -12.05942 -11.70464 -11.57029 -11.43733 -10.93401 -10.85306 -10.58938 -10.42141 -8.16316 -6.25919 1.29233 1.45470 1.47102 1.53877 1.90157 2.43552 3.14174 3.30959 3.67427 3.90401 4.06412 4.07974 4.19510 4.38369 4.50953 4.59579 4.66936 4.67230 4.69908 4.78613 4.91533 4.96208 5.18776 5.22423 5.25276 5.36088 5.40592 5.45476 5.73129 5.76232 6.18492 6.74248 6.87927 7.42016 8.91947 Molecular weight = 228.12amu Principal moments of inertia in cm(-1) A = 0.021222 B = 0.009143 C = 0.007118 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1319.043650 B = 3061.761763 C = 3932.618425 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.112 4.112 3 C -0.106 4.106 4 C 0.442 3.558 5 O -0.558 6.558 6 O -0.342 6.342 7 C 0.119 3.881 8 C 0.004 3.996 9 C -0.513 4.513 10 H 0.067 0.933 11 C 0.025 3.975 12 N -0.916 5.916 13 Si 0.952 3.048 14 H -0.270 1.270 15 H -0.291 1.291 16 H -0.267 1.267 17 C 0.065 3.935 18 O -0.408 6.408 19 C 0.039 3.961 20 H 0.063 0.937 21 H 0.069 0.931 22 H 0.066 0.934 23 H 0.061 0.939 24 H 0.053 0.947 25 H 0.118 0.882 26 H 0.130 0.870 27 H 0.042 0.958 28 H 0.047 0.953 29 H 0.263 0.737 30 H 0.059 0.941 31 H 0.073 0.927 32 H 0.085 0.915 33 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.641 -1.721 -4.020 11.505 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.149 4.149 3 C -0.143 4.143 4 C 0.288 3.712 5 O -0.450 6.450 6 O -0.257 6.257 7 C 0.045 3.955 8 C 0.004 3.996 9 C -0.550 4.550 10 H 0.085 0.915 11 C -0.176 4.176 12 N -0.554 5.554 13 Si 0.778 3.222 14 H -0.195 1.195 15 H -0.216 1.216 16 H -0.192 1.192 17 C -0.012 4.012 18 O -0.328 6.328 19 C -0.037 4.037 20 H 0.082 0.918 21 H 0.088 0.912 22 H 0.085 0.915 23 H 0.080 0.920 24 H 0.072 0.928 25 H 0.136 0.864 26 H 0.148 0.852 27 H 0.061 0.939 28 H 0.066 0.934 29 H 0.072 0.928 30 H 0.078 0.922 31 H 0.091 0.909 32 H 0.104 0.896 33 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -10.173 -2.170 -4.095 11.179 hybrid contribution 0.299 0.155 1.087 1.138 sum -9.874 -2.015 -3.008 10.517 Atomic orbital electron populations 1.21733 0.92489 1.02867 1.03039 1.21362 0.97646 0.93460 1.02471 1.21611 0.83877 1.01275 1.07555 1.24894 0.93833 0.81295 0.71157 1.90583 1.72029 1.34416 1.47935 1.86516 1.22573 1.34224 1.82436 1.22422 0.75519 0.98604 0.98928 1.20540 0.93115 0.91600 0.94373 1.20926 1.30338 1.13110 0.90650 0.91455 1.25659 0.95028 0.96184 1.00683 1.70024 1.33292 1.33494 1.18601 0.85691 0.79241 0.79306 0.77961 1.19493 1.21641 1.19199 1.23487 0.98365 1.00534 0.78790 1.89623 1.37714 1.80254 1.25168 1.23874 0.84810 0.98236 0.96784 0.91755 0.91158 0.91508 0.92031 0.92845 0.86433 0.85232 0.93929 0.93443 0.92839 0.92212 0.90906 0.89649 0.90067 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.28 9.91 71.98 0.71 -1.57 16 2 C -0.11 -2.59 5.22 30.59 0.16 -2.43 16 3 C -0.11 -2.73 5.81 29.85 0.17 -2.56 16 4 C 0.44 17.20 7.96 71.24 0.57 17.76 16 5 O -0.56 -24.98 15.73 21.97 0.35 -24.64 16 6 O -0.34 -15.20 9.79 -51.36 -0.50 -15.70 16 7 C 0.12 5.82 4.83 71.98 0.35 6.16 16 8 C 0.00 0.21 0.76 -52.65 -0.04 0.17 16 9 C -0.51 -26.21 8.01 25.60 0.21 -26.01 16 10 H 0.07 3.34 7.82 -2.91 -0.02 3.32 16 11 C 0.02 1.28 5.36 84.65 0.45 1.73 16 12 N -0.92 -50.39 12.09 21.45 0.26 -50.13 16 13 Si 0.95 41.36 29.54 68.60 2.03 43.39 16 14 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16 15 H -0.29 -12.67 7.11 99.48 0.71 -11.97 16 16 H -0.27 -11.16 7.11 99.48 0.71 -10.45 16 17 C 0.07 3.10 7.19 63.84 0.46 3.56 16 18 O -0.41 -18.53 12.57 -148.98 -1.87 -20.41 16 19 C 0.04 1.65 7.89 63.87 0.50 2.15 16 20 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 21 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 22 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 23 H 0.06 1.51 8.10 -2.39 -0.02 1.49 16 24 H 0.05 1.40 8.10 -2.39 -0.02 1.38 16 25 H 0.12 2.73 8.14 -2.39 -0.02 2.71 16 26 H 0.13 2.61 8.14 -2.39 -0.02 2.59 16 27 H 0.04 2.03 7.96 -2.39 -0.02 2.01 16 28 H 0.05 2.60 7.58 -2.38 -0.02 2.58 16 29 H 0.26 13.98 8.31 -92.71 -0.77 13.21 16 30 H 0.06 2.95 8.13 -2.38 -0.02 2.93 16 31 H 0.07 3.45 8.10 -2.39 -0.02 3.43 16 32 H 0.09 3.33 8.10 -2.39 -0.02 3.31 16 33 H 0.08 3.09 8.13 -2.39 -0.02 3.07 16 Total: -1.00 -61.70 285.03 4.88 -56.83 By element: Atomic # 1 Polarization: 10.60 SS G_CDS: 1.08 Total: 11.68 kcal Atomic # 6 Polarization: -4.56 SS G_CDS: 3.54 Total: -1.01 kcal Atomic # 7 Polarization: -50.39 SS G_CDS: 0.26 Total: -50.13 kcal Atomic # 8 Polarization: -58.72 SS G_CDS: -2.03 Total: -60.75 kcal Atomic # 14 Polarization: 41.36 SS G_CDS: 2.03 Total: 43.39 kcal Total: -61.70 4.88 -56.83 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001515955822.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.994 kcal (2) G-P(sol) polarization free energy of solvation -61.704 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.698 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.876 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.828 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.822 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds