Wall clock time and date at job start Thu Apr 9 2020 12:00:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 S 1.71052 * 125.43933 * 2 1 4 4 C 1.76073 * 90.37099 * 180.20858 * 3 2 1 5 5 C 1.46949 * 125.50286 * 179.78346 * 4 3 2 6 6 O 1.21697 * 120.00244 * 0.02806 * 5 4 3 7 7 N 1.34778 * 120.00103 * 180.02562 * 5 4 3 8 8 C 1.36771 * 120.00009 * 180.02562 * 7 5 4 9 9 H 1.08002 * 119.99931 * 0.02562 * 8 7 5 10 10 C 1.39084 * 119.99776 * 180.02562 * 8 7 5 11 11 N 1.31343 * 119.99667 * 180.02562 * 10 8 7 12 12 Si 1.86800 * 120.00218 * 359.97438 * 10 8 7 13 13 H 1.48501 * 109.47182 * 90.00070 * 12 10 8 14 14 H 1.48505 * 109.46979 * 210.00488 * 12 10 8 15 15 H 1.48505 * 109.46851 * 330.00133 * 12 10 8 16 16 N 1.30816 * 108.99844 * 359.82759 * 4 3 2 17 17 C 1.30876 * 115.85479 * 359.97438 * 16 4 3 18 18 O 1.36040 * 122.17112 * 179.97438 * 17 16 4 19 19 H 1.09001 * 109.46965 * 270.09872 * 1 2 3 20 20 H 1.08994 * 109.47212 * 30.10551 * 1 2 3 21 21 H 1.09008 * 109.46612 * 150.10438 * 1 2 3 22 22 H 0.97005 * 120.00248 * 0.02562 * 7 5 4 23 23 H 0.97005 * 119.99734 * 180.02562 * 11 10 8 24 24 H 0.96700 * 114.00170 * 90.02801 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 16 2.4989 1.3936 0.0000 4 6 3.9400 0.3820 -0.0064 5 6 5.3257 0.8708 -0.0140 6 8 5.5490 2.0671 -0.0158 7 7 6.3495 -0.0058 -0.0189 8 6 7.6393 0.4492 -0.0255 9 1 7.8374 1.5109 -0.0263 10 6 8.6958 -0.4554 -0.0311 11 7 9.9344 -0.0185 -0.0369 12 14 8.3531 -2.2917 -0.0290 13 1 8.2547 -2.7785 -1.4285 14 1 9.4580 -3.0006 0.6653 15 1 7.0741 -2.5557 0.6781 16 7 3.5779 -0.8751 -0.0043 17 6 2.2882 -1.0975 0.0024 18 8 1.7701 -2.3554 0.0048 19 1 -0.3633 0.0018 1.0277 20 1 -0.3633 0.8890 -0.5154 21 1 -0.3633 -0.8910 -0.5123 22 1 6.1716 -0.9594 -0.0178 23 1 10.6712 -0.6494 -0.0412 24 1 1.6245 -2.7191 0.8889 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001520914494.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:00:31 Heat of formation + Delta-G solvation = -30.181117 kcal Electronic energy + Delta-G solvation = -13193.738781 eV Core-core repulsion = 10620.688499 eV Total energy + Delta-G solvation = -2573.050282 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 228.035 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.02208 -38.28456 -36.11189 -34.26402 -32.34907 -31.90750 -27.56153 -25.04846 -24.18604 -21.33530 -19.35272 -18.60200 -18.01494 -17.30120 -16.06553 -15.46416 -15.11444 -14.09840 -13.71943 -13.47001 -13.26717 -13.02360 -12.77217 -12.38363 -12.34145 -11.91719 -11.34041 -10.77327 -10.70406 -10.27158 -9.83647 -9.64455 -9.18302 -8.89661 -8.48222 -8.29488 -6.68401 -4.03117 0.53213 1.48704 1.98354 2.54876 2.99130 3.03396 3.06378 3.83490 3.88833 3.95953 4.55926 4.93630 5.03393 5.08655 5.42427 5.44630 5.70970 5.87201 6.16226 7.22085 7.50582 7.79523 7.85673 8.28133 8.60719 9.09234 9.56972 10.40509 Molecular weight = 228.04amu Principal moments of inertia in cm(-1) A = 0.039937 B = 0.008135 C = 0.006787 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 700.928270 B = 3441.292379 C = 4124.512453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C -0.309 4.309 3 S 0.227 5.773 4 C 0.051 3.949 5 C 0.488 3.512 6 O -0.577 6.577 7 N -0.529 5.529 8 C -0.286 4.286 9 H 0.131 0.869 10 C 0.048 3.952 11 N -0.842 5.842 12 Si 0.879 3.121 13 H -0.263 1.263 14 H -0.269 1.269 15 H -0.259 1.259 16 N -0.479 5.479 17 C 0.246 3.754 18 O -0.466 6.466 19 H 0.070 0.930 20 H 0.068 0.932 21 H 0.077 0.923 22 H 0.385 0.615 23 H 0.283 0.717 24 H 0.389 0.611 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.008 -3.630 1.719 15.536 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.434 4.434 3 S 0.482 5.518 4 C -0.223 4.223 5 C 0.274 3.726 6 O -0.463 6.463 7 N -0.164 5.164 8 C -0.418 4.418 9 H 0.149 0.851 10 C -0.161 4.161 11 N -0.479 5.479 12 Si 0.703 3.297 13 H -0.188 1.188 14 H -0.194 1.194 15 H -0.184 1.184 16 N -0.204 5.204 17 C 0.067 3.933 18 O -0.271 6.271 19 H 0.089 0.911 20 H 0.087 0.913 21 H 0.096 0.904 22 H 0.220 0.780 23 H 0.094 0.906 24 H 0.244 0.756 Dipole moment (debyes) X Y Z Total from point charges -14.419 -2.171 1.102 14.623 hybrid contribution -0.446 -2.647 0.487 2.728 sum -14.864 -4.818 1.589 15.706 Atomic orbital electron populations 1.20031 0.86537 1.03170 1.02356 1.25406 1.03057 0.97873 1.17086 1.83806 0.95751 1.06836 1.65367 1.27745 0.99879 0.89794 1.04903 1.15966 0.81029 0.86363 0.89273 1.90733 1.82871 1.14141 1.58537 1.42120 1.06132 1.08332 1.59837 1.19736 0.78878 0.97455 1.45704 0.85145 1.25223 0.94806 0.99682 0.96370 1.69590 0.98435 1.36396 1.43483 0.86621 0.79454 0.83685 0.79941 1.18782 1.19411 1.18363 1.66497 1.16541 1.19543 1.17862 1.17745 0.85749 0.85616 1.04162 1.84898 1.82265 1.26748 1.33197 0.91122 0.91343 0.90426 0.77993 0.90612 0.75591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.64 10.21 36.01 0.37 -0.28 14 2 C -0.31 -4.57 6.38 -35.56 -0.23 -4.79 14 3 S 0.23 3.71 22.99 -107.50 -2.47 1.24 14 4 C 0.05 1.07 7.45 -14.46 -0.11 0.96 14 5 C 0.49 12.02 7.75 -12.73 -0.10 11.92 14 6 O -0.58 -15.72 16.51 5.19 0.09 -15.63 14 7 N -0.53 -13.26 5.08 -12.10 -0.06 -13.33 14 8 C -0.29 -7.85 10.16 -15.03 -0.15 -8.01 14 9 H 0.13 3.98 7.38 -52.49 -0.39 3.59 14 10 C 0.05 1.26 5.50 -17.45 -0.10 1.17 14 11 N -0.84 -22.97 13.95 55.50 0.77 -22.19 14 12 Si 0.88 19.08 27.74 -169.99 -4.71 14.36 14 13 H -0.26 -5.64 7.11 56.52 0.40 -5.23 14 14 H -0.27 -5.68 7.11 56.52 0.40 -5.28 14 15 H -0.26 -5.44 6.52 56.52 0.37 -5.07 14 16 N -0.48 -9.60 10.25 -11.64 -0.12 -9.72 14 17 C 0.25 4.16 7.74 -19.21 -0.15 4.01 14 18 O -0.47 -6.66 13.26 -19.87 -0.26 -6.93 14 19 H 0.07 0.61 8.14 -51.93 -0.42 0.19 14 20 H 0.07 0.63 8.14 -51.93 -0.42 0.20 14 21 H 0.08 0.77 7.98 -51.92 -0.41 0.36 14 22 H 0.39 9.03 5.41 -40.82 -0.22 8.80 14 23 H 0.28 7.03 8.31 -40.82 -0.34 6.69 14 24 H 0.39 3.59 9.07 45.56 0.41 4.00 14 LS Contribution 240.12 15.07 3.62 3.62 Total: -1.00 -31.10 240.12 -4.24 -35.34 By element: Atomic # 1 Polarization: 8.88 SS G_CDS: -0.62 Total: 8.26 kcal Atomic # 6 Polarization: 5.44 SS G_CDS: -0.46 Total: 4.98 kcal Atomic # 7 Polarization: -45.83 SS G_CDS: 0.59 Total: -45.24 kcal Atomic # 8 Polarization: -22.38 SS G_CDS: -0.18 Total: -22.56 kcal Atomic # 14 Polarization: 19.08 SS G_CDS: -4.71 Total: 14.36 kcal Atomic # 16 Polarization: 3.71 SS G_CDS: -2.47 Total: 1.24 kcal Total LS contribution 3.62 Total: 3.62 kcal Total: -31.10 -4.24 -35.34 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001520914494.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.155 kcal (2) G-P(sol) polarization free energy of solvation -31.100 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.945 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.236 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.336 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.181 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds