Wall clock time and date at job start Thu Apr 9 2020 12:00:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 S 1.71052 * 125.43933 * 2 1 4 4 C 1.76073 * 90.37099 * 180.20858 * 3 2 1 5 5 C 1.46949 * 125.50286 * 179.78346 * 4 3 2 6 6 O 1.21697 * 120.00244 * 0.02806 * 5 4 3 7 7 N 1.34778 * 120.00103 * 180.02562 * 5 4 3 8 8 C 1.36771 * 120.00009 * 180.02562 * 7 5 4 9 9 H 1.08002 * 119.99931 * 0.02562 * 8 7 5 10 10 C 1.39084 * 119.99776 * 180.02562 * 8 7 5 11 11 N 1.31343 * 119.99667 * 180.02562 * 10 8 7 12 12 Si 1.86800 * 120.00218 * 359.97438 * 10 8 7 13 13 H 1.48501 * 109.47182 * 90.00070 * 12 10 8 14 14 H 1.48505 * 109.46979 * 210.00488 * 12 10 8 15 15 H 1.48505 * 109.46851 * 330.00133 * 12 10 8 16 16 N 1.30816 * 108.99844 * 359.82759 * 4 3 2 17 17 C 1.30876 * 115.85479 * 359.97438 * 16 4 3 18 18 O 1.36040 * 122.17112 * 179.97438 * 17 16 4 19 19 H 1.09001 * 109.46965 * 270.09872 * 1 2 3 20 20 H 1.08994 * 109.47212 * 30.10551 * 1 2 3 21 21 H 1.09008 * 109.46612 * 150.10438 * 1 2 3 22 22 H 0.97005 * 120.00248 * 0.02562 * 7 5 4 23 23 H 0.97005 * 119.99734 * 180.02562 * 11 10 8 24 24 H 0.96700 * 114.00170 * 90.02801 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 16 2.4989 1.3936 0.0000 4 6 3.9400 0.3820 -0.0064 5 6 5.3257 0.8708 -0.0140 6 8 5.5490 2.0671 -0.0158 7 7 6.3495 -0.0058 -0.0189 8 6 7.6393 0.4492 -0.0255 9 1 7.8374 1.5109 -0.0263 10 6 8.6958 -0.4554 -0.0311 11 7 9.9344 -0.0185 -0.0369 12 14 8.3531 -2.2917 -0.0290 13 1 8.2547 -2.7785 -1.4285 14 1 9.4580 -3.0006 0.6653 15 1 7.0741 -2.5557 0.6781 16 7 3.5779 -0.8751 -0.0043 17 6 2.2882 -1.0975 0.0024 18 8 1.7701 -2.3554 0.0048 19 1 -0.3633 0.0018 1.0277 20 1 -0.3633 0.8890 -0.5154 21 1 -0.3633 -0.8910 -0.5123 22 1 6.1716 -0.9594 -0.0178 23 1 10.6712 -0.6494 -0.0412 24 1 1.6245 -2.7191 0.8889 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001520914494.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:00:30 Heat of formation + Delta-G solvation = -58.152280 kcal Electronic energy + Delta-G solvation = -13194.951702 eV Core-core repulsion = 10620.688499 eV Total energy + Delta-G solvation = -2574.263202 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 228.035 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.44383 -40.14318 -37.38640 -36.25033 -34.00009 -33.35406 -29.13390 -26.61322 -25.68350 -22.84362 -21.23100 -20.32469 -19.43492 -18.55213 -17.74222 -17.08895 -16.74829 -15.82861 -15.57814 -14.90209 -14.61048 -14.51767 -14.09804 -13.92738 -13.61558 -13.08862 -12.93385 -12.55648 -12.10623 -11.98744 -11.71754 -11.29261 -10.72930 -10.51130 -10.44606 -9.66078 -8.61028 -6.14638 -0.87410 0.06264 0.60423 1.10316 1.27148 1.33195 1.37516 2.09752 2.10868 2.44551 2.92852 3.04757 3.67941 3.91926 4.02253 4.65169 4.71259 4.84967 5.16070 5.33160 5.75201 6.23724 6.39568 6.59768 6.67082 7.13152 7.63361 8.53662 Molecular weight = 228.04amu Principal moments of inertia in cm(-1) A = 0.039937 B = 0.008135 C = 0.006787 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 700.928270 B = 3441.292379 C = 4124.512453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C -0.265 4.265 3 S 0.297 5.703 4 C -0.012 4.012 5 C 0.503 3.497 6 O -0.610 6.610 7 N -0.542 5.542 8 C -0.329 4.329 9 H 0.078 0.922 10 C 0.007 3.993 11 N -0.898 5.898 12 Si 0.949 3.051 13 H -0.255 1.255 14 H -0.256 1.256 15 H -0.248 1.248 16 N -0.479 5.479 17 C 0.218 3.782 18 O -0.465 6.465 19 H 0.101 0.899 20 H 0.089 0.911 21 H 0.091 0.909 22 H 0.393 0.607 23 H 0.289 0.711 24 H 0.412 0.588 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.437 -5.305 1.923 20.239 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.390 4.390 3 S 0.551 5.449 4 C -0.285 4.285 5 C 0.289 3.711 6 O -0.497 6.497 7 N -0.179 5.179 8 C -0.459 4.459 9 H 0.096 0.904 10 C -0.197 4.197 11 N -0.536 5.536 12 Si 0.769 3.231 13 H -0.179 1.179 14 H -0.180 1.180 15 H -0.172 1.172 16 N -0.205 5.205 17 C 0.040 3.960 18 O -0.273 6.273 19 H 0.119 0.881 20 H 0.107 0.893 21 H 0.110 0.890 22 H 0.229 0.771 23 H 0.099 0.901 24 H 0.270 0.730 Dipole moment (debyes) X Y Z Total from point charges -18.807 -3.858 1.322 19.244 hybrid contribution 0.301 -1.994 0.436 2.063 sum -18.506 -5.852 1.758 19.489 Atomic orbital electron populations 1.20372 0.82648 1.04909 1.04773 1.26205 1.05355 0.96555 1.10865 1.83649 0.92910 1.06034 1.62281 1.26873 0.99473 0.91591 1.10608 1.16572 0.82661 0.85854 0.85982 1.90688 1.84379 1.15868 1.58736 1.41870 1.05295 1.08609 1.62105 1.19226 0.80865 0.95510 1.50299 0.90409 1.25999 0.94022 1.04582 0.95117 1.69699 0.99471 1.38287 1.46098 0.85571 0.79981 0.77102 0.80424 1.17937 1.18034 1.17187 1.66401 1.18850 1.19608 1.15662 1.17850 0.84932 0.87254 1.06010 1.84887 1.81574 1.25507 1.35373 0.88090 0.89254 0.89044 0.77077 0.90100 0.72986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.96 10.21 71.24 0.73 -0.23 14 2 C -0.26 -6.44 6.38 24.88 0.16 -6.28 14 3 S 0.30 8.69 22.99 -56.49 -1.30 7.39 14 4 C -0.01 -0.50 7.45 87.13 0.65 0.15 14 5 C 0.50 25.53 7.75 86.52 0.67 26.20 14 6 O -0.61 -34.65 16.51 -4.34 -0.07 -34.72 14 7 N -0.54 -28.32 5.08 -310.41 -1.58 -29.89 14 8 C -0.33 -19.43 10.16 84.13 0.85 -18.58 14 9 H 0.08 5.26 7.38 -2.91 -0.02 5.24 14 10 C 0.01 0.37 5.50 84.97 0.47 0.84 14 11 N -0.90 -52.06 13.95 21.69 0.30 -51.75 14 12 Si 0.95 40.29 27.74 68.60 1.90 42.19 14 13 H -0.26 -10.41 7.11 99.48 0.71 -9.70 14 14 H -0.26 -10.22 7.11 99.48 0.71 -9.52 14 15 H -0.25 -9.90 6.52 99.48 0.65 -9.25 14 16 N -0.48 -18.13 10.25 -304.08 -3.12 -21.25 14 17 C 0.22 6.49 7.74 84.03 0.65 7.14 14 18 O -0.47 -11.21 13.26 -94.00 -1.25 -12.46 14 19 H 0.10 1.00 8.14 -2.39 -0.02 0.98 14 20 H 0.09 1.01 8.14 -2.39 -0.02 0.99 14 21 H 0.09 1.19 7.98 -2.38 -0.02 1.18 14 22 H 0.39 18.73 5.41 -92.70 -0.50 18.23 14 23 H 0.29 15.11 8.31 -92.70 -0.77 14.34 14 24 H 0.41 5.64 9.07 -74.06 -0.67 4.97 14 Total: -1.00 -72.92 240.12 -0.89 -73.80 By element: Atomic # 1 Polarization: 17.42 SS G_CDS: 0.04 Total: 17.46 kcal Atomic # 6 Polarization: 5.05 SS G_CDS: 4.18 Total: 9.23 kcal Atomic # 7 Polarization: -98.50 SS G_CDS: -4.39 Total: -102.90 kcal Atomic # 8 Polarization: -45.86 SS G_CDS: -1.32 Total: -47.18 kcal Atomic # 14 Polarization: 40.29 SS G_CDS: 1.90 Total: 42.19 kcal Atomic # 16 Polarization: 8.69 SS G_CDS: -1.30 Total: 7.39 kcal Total: -72.92 -0.89 -73.80 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001520914494.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.652 kcal (2) G-P(sol) polarization free energy of solvation -72.918 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.266 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.887 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.804 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.152 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds