Wall clock time and date at job start Thu Apr 9 2020 11:59:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09004 * 109.50467 * 2 1 4 4 C 1.53093 * 109.54069 * 120.10683 * 2 1 3 5 5 O 1.43021 * 109.25865 * 176.80232 * 4 2 1 6 6 C 1.43016 * 113.73703 * 301.33513 * 5 4 2 7 7 C 1.53096 * 109.26087 * 58.66698 * 6 5 4 8 8 N 1.47010 * 109.25767 * 303.14976 * 7 6 5 9 9 C 1.46902 * 111.00163 * 182.39000 * 8 7 6 10 10 C 1.53008 * 109.46622 * 46.36726 * 9 8 7 11 11 N 1.46902 * 109.46622 * 180.02562 * 10 9 8 12 12 C 1.46906 * 110.99573 * 179.97438 * 11 10 9 13 13 C 1.50699 * 109.46990 * 180.02562 * 12 11 10 14 14 H 1.08005 * 119.99734 * 0.02562 * 13 12 11 15 15 C 1.37876 * 120.00116 * 180.02562 * 13 12 11 16 16 N 1.31516 * 119.99947 * 359.97438 * 15 13 12 17 17 Si 1.86795 * 120.00011 * 179.97438 * 15 13 12 18 18 H 1.48508 * 109.47179 * 90.00277 * 17 15 13 19 19 H 1.48507 * 109.47135 * 209.99685 * 17 15 13 20 20 H 1.48494 * 109.47644 * 330.00010 * 17 15 13 21 21 H 1.08994 * 109.47582 * 180.08884 * 1 2 3 22 22 H 1.09009 * 109.47124 * 300.08717 * 1 2 3 23 23 H 1.08999 * 109.47174 * 60.08095 * 1 2 3 24 24 H 1.09000 * 109.50943 * 296.73988 * 4 2 1 25 25 H 1.09002 * 109.50706 * 56.87045 * 4 2 1 26 26 H 1.09000 * 109.50173 * 178.60404 * 6 5 4 27 27 H 1.09003 * 109.50226 * 298.72963 * 6 5 4 28 28 H 1.08997 * 109.50383 * 183.21478 * 7 6 5 29 29 H 1.08998 * 109.50438 * 63.08883 * 7 6 5 30 30 H 1.09006 * 109.46997 * 286.37010 * 9 8 7 31 31 H 1.08995 * 109.47334 * 166.36587 * 9 8 7 32 32 H 1.08990 * 109.46924 * 60.00139 * 10 9 8 33 33 H 1.09004 * 109.46978 * 300.00016 * 10 9 8 34 34 H 1.00896 * 111.00219 * 303.95583 * 11 10 9 35 35 H 1.09002 * 109.46991 * 299.99841 * 12 11 10 36 36 H 1.09000 * 109.47202 * 60.00133 * 12 11 10 37 37 H 0.96998 * 120.00296 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0275 0.0000 4 6 2.0420 -0.7237 1.2481 5 8 3.4703 -0.7857 1.2049 6 6 3.9827 -1.4563 0.0503 7 6 3.4902 -0.7400 -1.2099 8 7 2.0209 -0.6947 -1.1991 9 6 1.5045 -0.0641 -2.4212 10 6 2.2245 -0.6469 -3.6390 11 7 1.7085 -0.0159 -4.8612 12 6 2.3789 -0.5517 -6.0535 13 6 1.8252 0.1182 -7.2847 14 1 1.0529 0.8674 -7.1907 15 6 2.3045 -0.2253 -8.5310 16 7 3.2452 -1.1372 -8.6453 17 14 1.6177 0.6046 -10.0570 18 1 2.4140 1.8209 -10.3599 19 1 1.6907 -0.3336 -11.2060 20 1 0.2025 0.9861 -9.8187 21 1 -0.3634 -1.0276 0.0016 22 1 -0.3634 0.5152 0.8893 23 1 -0.3633 0.5126 -0.8907 24 1 1.7281 -0.1796 2.1389 25 1 1.6346 -1.7343 1.2757 26 1 5.0723 -1.4420 0.0749 27 1 3.6316 -2.4883 0.0431 28 1 3.8312 -1.2809 -2.0927 29 1 3.8856 0.2756 -1.2293 30 1 1.6782 1.0111 -2.3766 31 1 0.4349 -0.2562 -2.5052 32 1 2.0508 -1.7220 -3.6836 33 1 3.2942 -0.4548 -3.5551 34 1 0.7077 -0.1241 -4.9292 35 1 3.4495 -0.3589 -5.9858 36 1 2.2063 -1.6262 -6.1154 37 1 3.5827 -1.3786 -9.5221 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591734491.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 11:59:13 Heat of formation + Delta-G solvation = -43.029287 kcal Electronic energy + Delta-G solvation = -16118.693056 eV Core-core repulsion = 13509.832049 eV Total energy + Delta-G solvation = -2608.861008 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 228.158 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.85699 -36.64999 -34.90053 -32.92878 -32.21163 -29.51030 -27.50827 -26.63322 -24.85119 -22.85990 -21.71830 -21.02914 -19.92976 -16.54544 -16.49040 -16.23520 -15.53318 -15.35660 -14.85038 -14.64966 -14.23536 -13.93321 -13.45525 -12.72366 -12.61606 -12.25697 -12.19485 -12.03778 -11.84608 -11.45369 -11.27002 -11.09000 -10.69686 -10.65368 -10.60909 -10.36604 -9.92967 -9.64886 -9.20063 -8.49506 -8.33659 -7.33682 -6.04543 -4.06753 3.31621 3.37212 3.41000 3.66925 3.80403 4.42445 4.64835 4.85170 4.91624 5.02157 5.16535 5.26480 5.31371 5.35728 5.40529 5.48585 5.53405 5.61472 5.64664 5.77712 5.83140 5.88930 5.95422 6.09703 6.34354 6.35901 6.94624 7.00406 7.07551 7.23646 7.40052 7.76469 8.10573 8.35716 8.58456 9.02316 9.58276 11.06671 Molecular weight = 228.16amu Principal moments of inertia in cm(-1) A = 0.054621 B = 0.004488 C = 0.004218 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 512.500618 B = 6237.174588 C = 6637.018334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.044 3.956 3 H 0.048 0.952 4 C 0.070 3.930 5 O -0.389 6.389 6 C 0.063 3.937 7 C 0.011 3.989 8 N -0.533 5.533 9 C 0.058 3.942 10 C 0.056 3.944 11 N -0.691 5.691 12 C 0.195 3.805 13 C -0.515 4.515 14 H 0.062 0.938 15 C 0.056 3.944 16 N -0.898 5.898 17 Si 0.900 3.100 18 H -0.280 1.280 19 H -0.287 1.287 20 H -0.273 1.273 21 H 0.064 0.936 22 H 0.060 0.940 23 H 0.063 0.937 24 H 0.094 0.906 25 H 0.058 0.942 26 H 0.097 0.903 27 H 0.059 0.941 28 H 0.095 0.905 29 H 0.043 0.957 30 H 0.041 0.959 31 H 0.075 0.925 32 H 0.027 0.973 33 H 0.065 0.935 34 H 0.328 0.672 35 H 0.027 0.973 36 H -0.013 1.013 37 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.603 -0.063 18.172 18.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.065 4.065 3 H 0.066 0.934 4 C -0.007 4.007 5 O -0.307 6.307 6 C -0.013 4.013 7 C -0.117 4.117 8 N -0.259 5.259 9 C -0.069 4.069 10 C -0.074 4.074 11 N -0.322 5.322 12 C 0.068 3.932 13 C -0.554 4.554 14 H 0.081 0.919 15 C -0.146 4.146 16 N -0.538 5.538 17 Si 0.728 3.272 18 H -0.206 1.206 19 H -0.213 1.213 20 H -0.198 1.198 21 H 0.084 0.916 22 H 0.079 0.921 23 H 0.082 0.918 24 H 0.112 0.888 25 H 0.077 0.923 26 H 0.115 0.885 27 H 0.077 0.923 28 H 0.114 0.886 29 H 0.062 0.938 30 H 0.060 0.940 31 H 0.094 0.906 32 H 0.045 0.955 33 H 0.083 0.917 34 H 0.145 0.855 35 H 0.045 0.955 36 H 0.005 0.995 37 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -2.121 -0.020 18.235 18.358 hybrid contribution -0.514 0.231 -1.306 1.422 sum -2.635 0.211 16.929 17.134 Atomic orbital electron populations 1.21803 0.93544 1.02773 1.02180 1.22315 0.96402 0.96462 0.91321 0.93365 1.22703 0.80976 1.00248 0.96815 1.87958 1.20681 1.78626 1.43455 1.22710 0.98872 0.95667 0.84100 1.22894 0.88430 1.00622 0.99725 1.62309 1.08238 1.53306 1.02054 1.22154 0.99722 0.96799 0.88244 1.21986 0.99131 0.96099 0.90159 1.60648 1.09043 1.60217 1.02248 1.19545 0.94864 0.92892 0.85849 1.21186 1.21553 1.22148 0.90491 0.91945 1.24994 0.95147 0.95206 0.99229 1.69963 1.28240 1.31528 1.24026 0.86466 0.79402 0.79145 0.82190 1.20601 1.21268 1.19829 0.91649 0.92134 0.91796 0.88766 0.92343 0.88493 0.92307 0.88638 0.93838 0.94028 0.90642 0.95524 0.91704 0.85536 0.95505 0.99502 0.92882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.41 8.90 37.16 0.33 -1.08 16 2 C 0.04 0.50 2.55 -67.60 -0.17 0.33 16 3 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 4 C 0.07 0.73 6.29 37.21 0.23 0.97 16 5 O -0.39 -4.84 10.83 -35.23 -0.38 -5.22 16 6 C 0.06 0.72 7.01 37.21 0.26 0.98 16 7 C 0.01 0.15 4.94 -3.71 -0.02 0.13 16 8 N -0.53 -7.14 4.69 -226.34 -1.06 -8.20 16 9 C 0.06 0.87 4.74 -3.82 -0.02 0.85 16 10 C 0.06 1.02 4.95 -3.82 -0.02 1.00 16 11 N -0.69 -15.02 6.49 -115.05 -0.75 -15.77 16 12 C 0.20 5.19 5.44 -4.97 -0.03 5.17 16 13 C -0.52 -14.76 9.32 -34.44 -0.32 -15.08 16 14 H 0.06 1.75 7.81 -52.48 -0.41 1.34 16 15 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 16 N -0.90 -27.02 13.29 55.43 0.74 -26.29 16 17 Si 0.90 21.77 29.54 -169.99 -5.02 16.75 16 18 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 19 H -0.29 -6.85 7.11 56.52 0.40 -6.44 16 20 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 21 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 22 H 0.06 0.47 8.14 -51.92 -0.42 0.05 16 23 H 0.06 0.66 6.60 -51.93 -0.34 0.32 16 24 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 25 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 26 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16 27 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.10 1.27 6.05 -51.93 -0.31 0.96 16 29 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.04 0.65 8.08 -51.93 -0.42 0.23 16 31 H 0.08 1.08 6.86 -51.93 -0.36 0.72 16 32 H 0.03 0.50 8.14 -51.93 -0.42 0.07 16 33 H 0.06 1.19 6.28 -51.93 -0.33 0.86 16 34 H 0.33 6.78 8.72 -39.29 -0.34 6.43 16 35 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 36 H -0.01 -0.36 8.14 -51.93 -0.42 -0.78 16 37 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 LS Contribution 294.03 15.07 4.43 4.43 Total: -1.00 -30.69 294.03 -8.19 -38.87 By element: Atomic # 1 Polarization: 6.94 SS G_CDS: -6.30 Total: 0.64 kcal Atomic # 6 Polarization: -5.38 SS G_CDS: 0.15 Total: -5.23 kcal Atomic # 7 Polarization: -49.18 SS G_CDS: -1.07 Total: -50.25 kcal Atomic # 8 Polarization: -4.84 SS G_CDS: -0.38 Total: -5.22 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.75 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -30.69 -8.19 -38.87 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591734491.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.155 kcal (2) G-P(sol) polarization free energy of solvation -30.688 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.843 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.186 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.874 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds