Wall clock time and date at job start Thu Apr 9 2020 11:59:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09004 * 109.50467 * 2 1 4 4 C 1.53093 * 109.54069 * 120.10683 * 2 1 3 5 5 O 1.43021 * 109.25865 * 176.80232 * 4 2 1 6 6 C 1.43016 * 113.73703 * 301.33513 * 5 4 2 7 7 C 1.53096 * 109.26087 * 58.66698 * 6 5 4 8 8 N 1.47010 * 109.25767 * 303.14976 * 7 6 5 9 9 C 1.46902 * 111.00163 * 182.39000 * 8 7 6 10 10 C 1.53008 * 109.46622 * 46.36726 * 9 8 7 11 11 N 1.46902 * 109.46622 * 180.02562 * 10 9 8 12 12 C 1.46906 * 110.99573 * 179.97438 * 11 10 9 13 13 C 1.50699 * 109.46990 * 180.02562 * 12 11 10 14 14 H 1.08005 * 119.99734 * 0.02562 * 13 12 11 15 15 C 1.37876 * 120.00116 * 180.02562 * 13 12 11 16 16 N 1.31516 * 119.99947 * 359.97438 * 15 13 12 17 17 Si 1.86795 * 120.00011 * 179.97438 * 15 13 12 18 18 H 1.48508 * 109.47179 * 90.00277 * 17 15 13 19 19 H 1.48507 * 109.47135 * 209.99685 * 17 15 13 20 20 H 1.48494 * 109.47644 * 330.00010 * 17 15 13 21 21 H 1.08994 * 109.47582 * 180.08884 * 1 2 3 22 22 H 1.09009 * 109.47124 * 300.08717 * 1 2 3 23 23 H 1.08999 * 109.47174 * 60.08095 * 1 2 3 24 24 H 1.09000 * 109.50943 * 296.73988 * 4 2 1 25 25 H 1.09002 * 109.50706 * 56.87045 * 4 2 1 26 26 H 1.09000 * 109.50173 * 178.60404 * 6 5 4 27 27 H 1.09003 * 109.50226 * 298.72963 * 6 5 4 28 28 H 1.08997 * 109.50383 * 183.21478 * 7 6 5 29 29 H 1.08998 * 109.50438 * 63.08883 * 7 6 5 30 30 H 1.09006 * 109.46997 * 286.37010 * 9 8 7 31 31 H 1.08995 * 109.47334 * 166.36587 * 9 8 7 32 32 H 1.08990 * 109.46924 * 60.00139 * 10 9 8 33 33 H 1.09004 * 109.46978 * 300.00016 * 10 9 8 34 34 H 1.00896 * 111.00219 * 303.95583 * 11 10 9 35 35 H 1.09002 * 109.46991 * 299.99841 * 12 11 10 36 36 H 1.09000 * 109.47202 * 60.00133 * 12 11 10 37 37 H 0.96998 * 120.00296 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0275 0.0000 4 6 2.0420 -0.7237 1.2481 5 8 3.4703 -0.7857 1.2049 6 6 3.9827 -1.4563 0.0503 7 6 3.4902 -0.7400 -1.2099 8 7 2.0209 -0.6947 -1.1991 9 6 1.5045 -0.0641 -2.4212 10 6 2.2245 -0.6469 -3.6390 11 7 1.7085 -0.0159 -4.8612 12 6 2.3789 -0.5517 -6.0535 13 6 1.8252 0.1182 -7.2847 14 1 1.0529 0.8674 -7.1907 15 6 2.3045 -0.2253 -8.5310 16 7 3.2452 -1.1372 -8.6453 17 14 1.6177 0.6046 -10.0570 18 1 2.4140 1.8209 -10.3599 19 1 1.6907 -0.3336 -11.2060 20 1 0.2025 0.9861 -9.8187 21 1 -0.3634 -1.0276 0.0016 22 1 -0.3634 0.5152 0.8893 23 1 -0.3633 0.5126 -0.8907 24 1 1.7281 -0.1796 2.1389 25 1 1.6346 -1.7343 1.2757 26 1 5.0723 -1.4420 0.0749 27 1 3.6316 -2.4883 0.0431 28 1 3.8312 -1.2809 -2.0927 29 1 3.8856 0.2756 -1.2293 30 1 1.6782 1.0111 -2.3766 31 1 0.4349 -0.2562 -2.5052 32 1 2.0508 -1.7220 -3.6836 33 1 3.2942 -0.4548 -3.5551 34 1 0.7077 -0.1241 -4.9292 35 1 3.4495 -0.3589 -5.9858 36 1 2.2063 -1.6262 -6.1154 37 1 3.5827 -1.3786 -9.5221 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591734491.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 11:59:12 Heat of formation + Delta-G solvation = -66.739464 kcal Electronic energy + Delta-G solvation = -16119.721207 eV Core-core repulsion = 13509.832049 eV Total energy + Delta-G solvation = -2609.889158 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 228.158 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.84249 -37.94336 -36.44715 -34.62280 -33.56278 -30.94127 -28.85471 -27.81540 -26.39872 -23.91492 -23.55336 -22.44721 -20.95537 -18.59381 -17.51307 -17.27280 -16.95525 -16.56846 -16.44994 -15.87560 -15.40390 -15.32164 -14.87654 -14.31029 -14.16085 -13.68523 -13.47925 -13.15425 -12.97361 -12.86419 -12.63443 -12.55535 -12.35754 -12.11815 -12.07214 -11.63929 -11.47058 -11.30403 -10.68079 -10.60187 -9.43252 -9.20329 -8.24538 -6.36359 1.41253 1.43208 1.54558 2.38517 2.62909 2.92288 3.09001 3.61585 3.81141 3.87989 3.92320 4.14234 4.16631 4.23714 4.31335 4.44339 4.51122 4.66346 4.70182 4.80072 4.84831 4.86096 4.89325 5.01383 5.03407 5.08431 5.22118 5.29966 5.58269 5.87363 5.97972 5.99373 6.15209 6.38136 6.67214 6.85260 7.34893 8.87343 Molecular weight = 228.16amu Principal moments of inertia in cm(-1) A = 0.054621 B = 0.004488 C = 0.004218 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 512.500618 B = 6237.174588 C = 6637.018334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.042 3.958 3 H 0.039 0.961 4 C 0.068 3.932 5 O -0.403 6.403 6 C 0.067 3.933 7 C 0.010 3.990 8 N -0.537 5.537 9 C 0.074 3.926 10 C 0.062 3.938 11 N -0.689 5.689 12 C 0.210 3.790 13 C -0.538 4.538 14 H 0.066 0.934 15 C 0.001 3.999 16 N -0.935 5.935 17 Si 0.976 3.024 18 H -0.273 1.273 19 H -0.281 1.281 20 H -0.262 1.262 21 H 0.066 0.934 22 H 0.083 0.917 23 H 0.055 0.945 24 H 0.118 0.882 25 H 0.064 0.936 26 H 0.113 0.887 27 H 0.064 0.936 28 H 0.086 0.914 29 H 0.033 0.967 30 H 0.035 0.965 31 H 0.085 0.915 32 H 0.021 0.979 33 H 0.058 0.942 34 H 0.337 0.663 35 H -0.002 1.002 36 H -0.038 1.038 37 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.731 0.533 18.832 19.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.067 4.067 3 H 0.057 0.943 4 C -0.008 4.008 5 O -0.322 6.322 6 C -0.010 4.010 7 C -0.118 4.118 8 N -0.263 5.263 9 C -0.054 4.054 10 C -0.068 4.068 11 N -0.320 5.320 12 C 0.082 3.918 13 C -0.576 4.576 14 H 0.084 0.916 15 C -0.197 4.197 16 N -0.575 5.575 17 Si 0.800 3.200 18 H -0.199 1.199 19 H -0.206 1.206 20 H -0.186 1.186 21 H 0.085 0.915 22 H 0.102 0.898 23 H 0.074 0.926 24 H 0.136 0.864 25 H 0.082 0.918 26 H 0.131 0.869 27 H 0.082 0.918 28 H 0.104 0.896 29 H 0.051 0.949 30 H 0.053 0.947 31 H 0.104 0.896 32 H 0.040 0.960 33 H 0.076 0.924 34 H 0.154 0.846 35 H 0.017 0.983 36 H -0.020 1.020 37 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -3.263 0.580 18.928 19.216 hybrid contribution -0.137 0.022 -1.438 1.445 sum -3.400 0.603 17.490 17.827 Atomic orbital electron populations 1.21785 0.91996 1.03084 1.02970 1.22440 0.97654 0.95850 0.90740 0.94304 1.22868 0.80051 1.00806 0.97095 1.87944 1.21834 1.78779 1.43608 1.22747 0.99867 0.95439 0.82930 1.22907 0.88315 1.00164 1.00451 1.62353 1.08468 1.53389 1.02113 1.21924 0.99791 0.96075 0.87635 1.21980 0.99130 0.95737 0.89957 1.60508 1.09376 1.60204 1.01892 1.19196 0.93561 0.91385 0.87691 1.21546 1.21970 1.22565 0.91566 0.91580 1.25981 0.95236 0.95670 1.02817 1.70092 1.29414 1.32825 1.25135 0.85290 0.79106 0.78045 0.77590 1.19861 1.20609 1.18585 0.91525 0.89818 0.92585 0.86405 0.91802 0.86864 0.91817 0.89616 0.94853 0.94708 0.89630 0.96032 0.92366 0.84588 0.98344 1.02034 0.92537 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.42 8.90 71.98 0.64 -1.78 16 2 C 0.04 0.89 2.55 44.92 0.11 1.00 16 3 H 0.04 0.91 8.14 -2.38 -0.02 0.89 16 4 C 0.07 1.29 6.29 72.01 0.45 1.74 16 5 O -0.40 -9.35 10.83 -148.98 -1.61 -10.96 16 6 C 0.07 1.44 7.01 72.01 0.50 1.94 16 7 C 0.01 0.25 4.94 86.31 0.43 0.68 16 8 N -0.54 -13.92 4.69 -870.00 -4.08 -18.00 16 9 C 0.07 2.15 4.74 86.31 0.41 2.56 16 10 C 0.06 2.25 4.95 86.31 0.43 2.68 16 11 N -0.69 -30.28 6.49 -517.91 -3.36 -33.64 16 12 C 0.21 11.48 5.44 85.56 0.47 11.94 16 13 C -0.54 -31.08 9.32 25.60 0.24 -30.84 16 14 H 0.07 3.68 7.81 -2.91 -0.02 3.66 16 15 C 0.00 0.07 5.46 84.65 0.46 0.53 16 16 N -0.93 -56.92 13.29 21.45 0.28 -56.64 16 17 Si 0.98 44.35 29.54 68.60 2.03 46.38 16 18 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 19 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 20 H -0.26 -11.32 7.11 99.48 0.71 -10.61 16 21 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 22 H 0.08 1.05 8.14 -2.38 -0.02 1.03 16 23 H 0.06 1.05 6.60 -2.39 -0.02 1.04 16 24 H 0.12 1.65 8.14 -2.39 -0.02 1.63 16 25 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 26 H 0.11 2.02 8.14 -2.39 -0.02 2.00 16 27 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 28 H 0.09 2.33 6.05 -2.39 -0.01 2.32 16 29 H 0.03 0.91 8.14 -2.39 -0.02 0.89 16 30 H 0.03 1.07 8.08 -2.38 -0.02 1.05 16 31 H 0.09 2.34 6.86 -2.39 -0.02 2.32 16 32 H 0.02 0.81 8.14 -2.39 -0.02 0.80 16 33 H 0.06 2.20 6.28 -2.38 -0.01 2.18 16 34 H 0.34 13.85 8.72 -89.70 -0.78 13.07 16 35 H 0.00 -0.09 8.14 -2.39 -0.02 -0.11 16 36 H -0.04 -2.23 8.14 -2.39 -0.02 -2.25 16 37 H 0.27 15.13 8.31 -92.71 -0.77 14.36 16 Total: -1.00 -65.30 294.03 -2.35 -67.65 By element: Atomic # 1 Polarization: 14.50 SS G_CDS: 0.25 Total: 14.75 kcal Atomic # 6 Polarization: -13.67 SS G_CDS: 4.14 Total: -9.53 kcal Atomic # 7 Polarization: -101.13 SS G_CDS: -7.15 Total: -108.28 kcal Atomic # 8 Polarization: -9.35 SS G_CDS: -1.61 Total: -10.96 kcal Atomic # 14 Polarization: 44.35 SS G_CDS: 2.03 Total: 46.38 kcal Total: -65.30 -2.35 -67.65 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591734491.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.908 kcal (2) G-P(sol) polarization free energy of solvation -65.300 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.393 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.347 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.647 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.739 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds