Wall clock time and date at job start Thu Apr 9 2020 11:59:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08995 * 109.50703 * 2 1 4 4 C 1.53098 * 109.50313 * 239.86947 * 2 1 3 5 5 O 1.43015 * 109.29196 * 183.23929 * 4 2 1 6 6 C 1.43020 * 113.73974 * 58.60103 * 5 4 2 7 7 C 1.53095 * 109.29124 * 301.39847 * 6 5 4 8 8 N 1.47015 * 109.25739 * 56.82758 * 7 6 5 9 9 C 1.46904 * 110.99903 * 177.60628 * 8 7 6 10 10 C 1.52993 * 109.47389 * 293.95178 * 9 8 7 11 11 N 1.46892 * 109.47470 * 180.02562 * 10 9 8 12 12 C 1.46904 * 111.00330 * 180.02562 * 11 10 9 13 13 C 1.50703 * 109.47163 * 179.97438 * 12 11 10 14 14 H 1.07995 * 119.99741 * 0.02562 * 13 12 11 15 15 C 1.37870 * 119.99877 * 179.97438 * 13 12 11 16 16 N 1.31524 * 120.00044 * 0.02562 * 15 13 12 17 17 Si 1.86801 * 120.00211 * 180.02562 * 15 13 12 18 18 H 1.48503 * 109.47005 * 0.02562 * 17 15 13 19 19 H 1.48492 * 109.47261 * 120.00131 * 17 15 13 20 20 H 1.48500 * 109.47038 * 240.00185 * 17 15 13 21 21 H 1.09000 * 109.46852 * 299.91242 * 1 2 3 22 22 H 1.08998 * 109.47111 * 59.91475 * 1 2 3 23 23 H 1.08999 * 109.46939 * 179.91513 * 1 2 3 24 24 H 1.09009 * 109.50876 * 303.15024 * 4 2 1 25 25 H 1.08998 * 109.50857 * 63.23676 * 4 2 1 26 26 H 1.09002 * 109.50941 * 181.44210 * 6 5 4 27 27 H 1.09003 * 109.50633 * 61.35674 * 6 5 4 28 28 H 1.08994 * 109.50879 * 176.75932 * 7 6 5 29 29 H 1.09001 * 109.51139 * 296.84838 * 7 6 5 30 30 H 1.09004 * 109.47055 * 53.95500 * 9 8 7 31 31 H 1.09002 * 109.46802 * 173.95218 * 9 8 7 32 32 H 1.09004 * 109.47285 * 300.00182 * 10 9 8 33 33 H 1.09001 * 109.46689 * 59.99912 * 10 9 8 34 34 H 1.00899 * 111.00585 * 56.04455 * 11 10 9 35 35 H 1.09008 * 109.46613 * 299.99382 * 12 11 10 36 36 H 1.08994 * 109.47423 * 59.99636 * 12 11 10 37 37 H 0.97005 * 119.99664 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8940 1.0274 0.0000 4 6 2.0412 -0.7244 -1.2481 5 8 3.4693 -0.7881 -1.2059 6 6 3.9819 -1.4579 -0.0509 7 6 3.4904 -0.7410 1.2093 8 7 2.0210 -0.6948 1.1990 9 6 1.5056 -0.0635 2.4213 10 6 1.8335 -0.9452 3.6279 11 7 1.3176 -0.3143 4.8500 12 6 1.6153 -1.1344 6.0319 13 6 1.0725 -0.4564 7.2635 14 1 0.5576 0.4889 7.1768 15 6 1.2325 -1.0434 8.5007 16 7 1.8592 -2.1949 8.6061 17 14 0.5592 -0.2034 10.0273 18 1 -0.0988 1.0708 9.6416 19 1 -0.4318 -1.0923 10.6850 20 1 1.6725 0.0789 10.9686 21 1 -0.3633 0.5125 0.8908 22 1 -0.3633 0.5151 -0.8892 23 1 -0.3633 -1.0277 -0.0015 24 1 1.6331 -1.7349 -1.2753 25 1 1.7266 -0.1808 -2.1390 26 1 5.0715 -1.4444 -0.0758 27 1 3.6308 -2.4899 -0.0429 28 1 3.8313 -1.2817 2.0921 29 1 3.8869 0.2742 1.2287 30 1 1.9700 0.9143 2.5488 31 1 0.4250 0.0551 2.3410 32 1 1.3690 -1.9230 3.5004 33 1 2.9140 -1.0638 3.7081 34 1 0.3276 -0.1348 4.7742 35 1 1.1499 -2.1139 5.9210 36 1 2.6943 -1.2537 6.1290 37 1 1.9721 -2.6077 9.4766 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591734492.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 11:59:14 Heat of formation + Delta-G solvation = -43.484364 kcal Electronic energy + Delta-G solvation = -16091.468029 eV Core-core repulsion = 13482.587288 eV Total energy + Delta-G solvation = -2608.880741 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 228.158 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.83753 -36.60661 -34.90316 -32.87745 -32.25549 -29.55263 -27.53999 -26.60479 -24.79731 -22.77518 -21.70004 -21.05256 -20.01762 -16.54302 -16.49702 -16.29320 -15.60642 -15.19751 -14.80972 -14.63348 -14.34472 -13.94227 -13.40806 -12.73320 -12.65834 -12.23270 -12.16928 -12.05582 -11.81081 -11.47214 -11.25914 -11.11898 -10.72260 -10.63613 -10.58678 -10.31910 -9.93117 -9.64833 -9.17138 -8.49184 -8.35511 -7.31165 -6.03873 -4.05973 3.30659 3.37747 3.42846 3.65261 3.78790 4.43177 4.63084 4.84187 4.89901 5.00698 5.14650 5.25528 5.32114 5.38060 5.41386 5.49482 5.53556 5.60390 5.67373 5.75185 5.81908 5.87429 5.98363 6.11799 6.34738 6.41825 6.94280 7.01305 7.07760 7.25864 7.41792 7.77940 8.11862 8.37495 8.60245 9.03551 9.59100 11.07344 Molecular weight = 228.16amu Principal moments of inertia in cm(-1) A = 0.055258 B = 0.004427 C = 0.004202 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 506.596070 B = 6322.615093 C = 6661.418016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.044 3.956 3 H 0.048 0.952 4 C 0.070 3.930 5 O -0.389 6.389 6 C 0.064 3.936 7 C 0.015 3.985 8 N -0.533 5.533 9 C 0.054 3.946 10 C 0.064 3.936 11 N -0.692 5.692 12 C 0.195 3.805 13 C -0.514 4.514 14 H 0.063 0.937 15 C 0.055 3.945 16 N -0.898 5.898 17 Si 0.899 3.101 18 H -0.272 1.272 19 H -0.285 1.285 20 H -0.284 1.284 21 H 0.064 0.936 22 H 0.060 0.940 23 H 0.065 0.935 24 H 0.059 0.941 25 H 0.094 0.906 26 H 0.097 0.903 27 H 0.059 0.941 28 H 0.092 0.908 29 H 0.042 0.958 30 H 0.041 0.959 31 H 0.077 0.923 32 H 0.026 0.974 33 H 0.062 0.938 34 H 0.328 0.672 35 H -0.013 1.013 36 H 0.027 0.973 37 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.067 2.372 -18.339 18.492 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.065 4.065 3 H 0.066 0.934 4 C -0.007 4.007 5 O -0.307 6.307 6 C -0.013 4.013 7 C -0.113 4.113 8 N -0.259 5.259 9 C -0.073 4.073 10 C -0.066 4.066 11 N -0.322 5.322 12 C 0.068 3.932 13 C -0.553 4.553 14 H 0.081 0.919 15 C -0.146 4.146 16 N -0.538 5.538 17 Si 0.727 3.273 18 H -0.197 1.197 19 H -0.211 1.211 20 H -0.210 1.210 21 H 0.083 0.917 22 H 0.079 0.921 23 H 0.084 0.916 24 H 0.077 0.923 25 H 0.112 0.888 26 H 0.115 0.885 27 H 0.077 0.923 28 H 0.111 0.889 29 H 0.061 0.939 30 H 0.059 0.941 31 H 0.095 0.905 32 H 0.044 0.956 33 H 0.080 0.920 34 H 0.144 0.856 35 H 0.005 0.995 36 H 0.045 0.955 37 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 0.630 2.234 -18.277 18.424 hybrid contribution -0.764 0.317 1.143 1.411 sum -0.134 2.551 -17.135 17.324 Atomic orbital electron populations 1.21852 0.93564 1.02907 1.02162 1.22277 0.96381 0.96448 0.91357 0.93443 1.22703 0.80942 1.00294 0.96803 1.87955 1.20719 1.78685 1.43367 1.22692 0.98833 0.95727 0.84077 1.22838 0.88303 1.00484 0.99689 1.62211 1.08205 1.53456 1.02047 1.22204 1.00348 0.96332 0.88424 1.21811 1.00174 0.95133 0.89522 1.60624 1.19846 1.49632 1.02139 1.19545 0.96842 0.90594 0.86178 1.21229 1.36260 1.06618 0.91169 0.91901 1.24999 0.95427 0.94972 0.99217 1.69982 1.42471 1.16971 1.24331 0.86420 0.78640 0.79505 0.82713 1.19651 1.21072 1.20976 0.91663 0.92089 0.91562 0.92308 0.88757 0.88518 0.92251 0.88935 0.93950 0.94094 0.90451 0.95567 0.91989 0.85621 0.99516 0.95487 0.92952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.44 8.92 37.16 0.33 -1.11 16 2 C 0.04 0.50 2.59 -67.60 -0.17 0.33 16 3 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 4 C 0.07 0.73 6.29 37.21 0.23 0.96 16 5 O -0.39 -4.78 10.83 -35.23 -0.38 -5.16 16 6 C 0.06 0.71 7.01 37.21 0.26 0.97 16 7 C 0.02 0.19 5.43 -3.71 -0.02 0.17 16 8 N -0.53 -7.11 4.54 -226.34 -1.03 -8.14 16 9 C 0.05 0.81 4.99 -3.83 -0.02 0.79 16 10 C 0.06 1.16 5.61 -3.83 -0.02 1.14 16 11 N -0.69 -15.08 6.49 -115.06 -0.75 -15.82 16 12 C 0.20 5.21 5.44 -4.97 -0.03 5.18 16 13 C -0.51 -14.75 9.32 -34.44 -0.32 -15.07 16 14 H 0.06 1.77 7.81 -52.49 -0.41 1.36 16 15 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 16 N -0.90 -27.08 13.29 55.43 0.74 -26.34 16 17 Si 0.90 21.79 29.54 -169.99 -5.02 16.77 16 18 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 19 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 20 H -0.28 -6.81 7.11 56.52 0.40 -6.40 16 21 H 0.06 0.67 6.17 -51.93 -0.32 0.35 16 22 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 23 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 24 H 0.06 0.60 8.14 -51.92 -0.42 0.18 16 25 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 26 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 27 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 28 H 0.09 1.20 6.37 -51.93 -0.33 0.87 16 29 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.04 0.64 8.12 -51.93 -0.42 0.22 16 31 H 0.08 1.09 5.77 -51.93 -0.30 0.79 16 32 H 0.03 0.50 8.14 -51.93 -0.42 0.07 16 33 H 0.06 1.15 6.51 -51.93 -0.34 0.81 16 34 H 0.33 6.76 8.72 -39.29 -0.34 6.42 16 35 H -0.01 -0.37 8.14 -51.92 -0.42 -0.79 16 36 H 0.03 0.78 8.14 -51.93 -0.42 0.35 16 37 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 LS Contribution 294.42 15.07 4.44 4.44 Total: -1.00 -30.81 294.42 -8.11 -38.92 By element: Atomic # 1 Polarization: 6.73 SS G_CDS: -6.25 Total: 0.48 kcal Atomic # 6 Polarization: -5.28 SS G_CDS: 0.15 Total: -5.14 kcal Atomic # 7 Polarization: -49.27 SS G_CDS: -1.04 Total: -50.31 kcal Atomic # 8 Polarization: -4.78 SS G_CDS: -0.38 Total: -5.16 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.77 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -30.81 -8.11 -38.92 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591734492.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.566 kcal (2) G-P(sol) polarization free energy of solvation -30.812 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.378 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.107 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.919 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.484 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds