Wall clock time and date at job start Thu Apr 9 2020 11:59:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08995 * 109.50703 * 2 1 4 4 C 1.53098 * 109.50313 * 239.86947 * 2 1 3 5 5 O 1.43015 * 109.29196 * 183.23929 * 4 2 1 6 6 C 1.43020 * 113.73974 * 58.60103 * 5 4 2 7 7 C 1.53095 * 109.29124 * 301.39847 * 6 5 4 8 8 N 1.47015 * 109.25739 * 56.82758 * 7 6 5 9 9 C 1.46904 * 110.99903 * 177.60628 * 8 7 6 10 10 C 1.52993 * 109.47389 * 293.95178 * 9 8 7 11 11 N 1.46892 * 109.47470 * 180.02562 * 10 9 8 12 12 C 1.46904 * 111.00330 * 180.02562 * 11 10 9 13 13 C 1.50703 * 109.47163 * 179.97438 * 12 11 10 14 14 H 1.07995 * 119.99741 * 0.02562 * 13 12 11 15 15 C 1.37870 * 119.99877 * 179.97438 * 13 12 11 16 16 N 1.31524 * 120.00044 * 0.02562 * 15 13 12 17 17 Si 1.86801 * 120.00211 * 180.02562 * 15 13 12 18 18 H 1.48503 * 109.47005 * 0.02562 * 17 15 13 19 19 H 1.48492 * 109.47261 * 120.00131 * 17 15 13 20 20 H 1.48500 * 109.47038 * 240.00185 * 17 15 13 21 21 H 1.09000 * 109.46852 * 299.91242 * 1 2 3 22 22 H 1.08998 * 109.47111 * 59.91475 * 1 2 3 23 23 H 1.08999 * 109.46939 * 179.91513 * 1 2 3 24 24 H 1.09009 * 109.50876 * 303.15024 * 4 2 1 25 25 H 1.08998 * 109.50857 * 63.23676 * 4 2 1 26 26 H 1.09002 * 109.50941 * 181.44210 * 6 5 4 27 27 H 1.09003 * 109.50633 * 61.35674 * 6 5 4 28 28 H 1.08994 * 109.50879 * 176.75932 * 7 6 5 29 29 H 1.09001 * 109.51139 * 296.84838 * 7 6 5 30 30 H 1.09004 * 109.47055 * 53.95500 * 9 8 7 31 31 H 1.09002 * 109.46802 * 173.95218 * 9 8 7 32 32 H 1.09004 * 109.47285 * 300.00182 * 10 9 8 33 33 H 1.09001 * 109.46689 * 59.99912 * 10 9 8 34 34 H 1.00899 * 111.00585 * 56.04455 * 11 10 9 35 35 H 1.09008 * 109.46613 * 299.99382 * 12 11 10 36 36 H 1.08994 * 109.47423 * 59.99636 * 12 11 10 37 37 H 0.97005 * 119.99664 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8940 1.0274 0.0000 4 6 2.0412 -0.7244 -1.2481 5 8 3.4693 -0.7881 -1.2059 6 6 3.9819 -1.4579 -0.0509 7 6 3.4904 -0.7410 1.2093 8 7 2.0210 -0.6948 1.1990 9 6 1.5056 -0.0635 2.4213 10 6 1.8335 -0.9452 3.6279 11 7 1.3176 -0.3143 4.8500 12 6 1.6153 -1.1344 6.0319 13 6 1.0725 -0.4564 7.2635 14 1 0.5576 0.4889 7.1768 15 6 1.2325 -1.0434 8.5007 16 7 1.8592 -2.1949 8.6061 17 14 0.5592 -0.2034 10.0273 18 1 -0.0988 1.0708 9.6416 19 1 -0.4318 -1.0923 10.6850 20 1 1.6725 0.0789 10.9686 21 1 -0.3633 0.5125 0.8908 22 1 -0.3633 0.5151 -0.8892 23 1 -0.3633 -1.0277 -0.0015 24 1 1.6331 -1.7349 -1.2753 25 1 1.7266 -0.1808 -2.1390 26 1 5.0715 -1.4444 -0.0758 27 1 3.6308 -2.4899 -0.0429 28 1 3.8313 -1.2817 2.0921 29 1 3.8869 0.2742 1.2287 30 1 1.9700 0.9143 2.5488 31 1 0.4250 0.0551 2.3410 32 1 1.3690 -1.9230 3.5004 33 1 2.9140 -1.0638 3.7081 34 1 0.3276 -0.1348 4.7742 35 1 1.1499 -2.1139 5.9210 36 1 2.6943 -1.2537 6.1290 37 1 1.9721 -2.6077 9.4766 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591734492.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 11:59:14 Heat of formation + Delta-G solvation = -67.145388 kcal Electronic energy + Delta-G solvation = -16092.494048 eV Core-core repulsion = 13482.587288 eV Total energy + Delta-G solvation = -2609.906760 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 228.158 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.80464 -37.89660 -36.45738 -34.59977 -33.55246 -30.99901 -28.84273 -27.84582 -26.31662 -23.81289 -23.51450 -22.53585 -21.00092 -18.59028 -17.51566 -17.32635 -16.90271 -16.59389 -16.39291 -15.80648 -15.45599 -15.33985 -14.78044 -14.35619 -14.21118 -13.65040 -13.50881 -13.16123 -12.97357 -12.84409 -12.65497 -12.51854 -12.33818 -12.13759 -12.07917 -11.56350 -11.47324 -11.29104 -10.68464 -10.59619 -9.43388 -9.18611 -8.24264 -6.36033 1.41357 1.42071 1.56182 2.38659 2.61843 2.92095 3.09278 3.66276 3.79171 3.87831 3.92812 4.14535 4.20809 4.23481 4.35293 4.44794 4.52085 4.68715 4.69456 4.79187 4.84904 4.86992 4.89368 4.98440 5.06025 5.11124 5.23456 5.29940 5.59199 5.89644 5.98824 6.00500 6.15456 6.39259 6.68676 6.86304 7.35319 8.87832 Molecular weight = 228.16amu Principal moments of inertia in cm(-1) A = 0.055258 B = 0.004427 C = 0.004202 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 506.596070 B = 6322.615093 C = 6661.418016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.043 3.957 3 H 0.042 0.958 4 C 0.068 3.932 5 O -0.402 6.402 6 C 0.067 3.933 7 C 0.013 3.987 8 N -0.540 5.540 9 C 0.070 3.930 10 C 0.069 3.931 11 N -0.689 5.689 12 C 0.209 3.791 13 C -0.537 4.537 14 H 0.066 0.934 15 C 0.001 3.999 16 N -0.935 5.935 17 Si 0.976 3.024 18 H -0.262 1.262 19 H -0.276 1.276 20 H -0.278 1.278 21 H 0.057 0.943 22 H 0.084 0.916 23 H 0.063 0.937 24 H 0.061 0.939 25 H 0.119 0.881 26 H 0.115 0.885 27 H 0.061 0.939 28 H 0.083 0.917 29 H 0.036 0.964 30 H 0.034 0.966 31 H 0.089 0.911 32 H 0.019 0.981 33 H 0.054 0.946 34 H 0.337 0.663 35 H -0.039 1.039 36 H -0.002 1.002 37 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.775 3.306 -19.001 19.302 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.066 4.066 3 H 0.060 0.940 4 C -0.008 4.008 5 O -0.321 6.321 6 C -0.010 4.010 7 C -0.115 4.115 8 N -0.266 5.266 9 C -0.058 4.058 10 C -0.061 4.061 11 N -0.320 5.320 12 C 0.082 3.918 13 C -0.575 4.575 14 H 0.084 0.916 15 C -0.198 4.198 16 N -0.575 5.575 17 Si 0.800 3.200 18 H -0.185 1.185 19 H -0.202 1.202 20 H -0.204 1.204 21 H 0.076 0.924 22 H 0.103 0.897 23 H 0.082 0.918 24 H 0.080 0.920 25 H 0.136 0.864 26 H 0.133 0.867 27 H 0.080 0.920 28 H 0.101 0.899 29 H 0.055 0.945 30 H 0.052 0.948 31 H 0.107 0.893 32 H 0.037 0.963 33 H 0.072 0.928 34 H 0.154 0.846 35 H -0.021 1.021 36 H 0.016 0.984 37 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -0.219 3.177 -18.973 19.239 hybrid contribution -0.476 -0.002 1.277 1.363 sum -0.695 3.176 -17.696 17.992 Atomic orbital electron populations 1.21836 0.92192 1.03028 1.03017 1.22395 0.97488 0.95995 0.90691 0.94032 1.22861 0.80088 1.00729 0.97147 1.87941 1.21780 1.78814 1.43553 1.22736 0.99907 0.95375 0.82970 1.22865 0.88022 1.00263 1.00341 1.62212 1.08634 1.53666 1.02112 1.21958 1.01052 0.94989 0.87831 1.21799 0.99431 0.95394 0.89447 1.60484 1.20600 1.48805 1.02099 1.19197 0.94596 0.89990 0.88062 1.21576 1.36728 1.06973 0.92228 0.91565 1.25988 0.95416 0.95538 1.02815 1.70109 1.43418 1.18487 1.25503 0.85236 0.78061 0.78654 0.78038 1.18548 1.20202 1.20367 0.92375 0.89690 0.91762 0.92027 0.86361 0.86723 0.92049 0.89877 0.94531 0.94771 0.89306 0.96256 0.92765 0.84627 1.02103 0.98353 0.92552 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.48 8.92 71.98 0.64 -1.84 16 2 C 0.04 0.90 2.59 44.93 0.12 1.01 16 3 H 0.04 0.94 8.14 -2.39 -0.02 0.92 16 4 C 0.07 1.28 6.29 72.01 0.45 1.73 16 5 O -0.40 -9.17 10.83 -148.98 -1.61 -10.79 16 6 C 0.07 1.41 7.01 72.01 0.50 1.91 16 7 C 0.01 0.33 5.43 86.31 0.47 0.80 16 8 N -0.54 -13.96 4.54 -870.00 -3.95 -17.91 16 9 C 0.07 2.03 4.99 86.30 0.43 2.46 16 10 C 0.07 2.55 5.61 86.30 0.48 3.03 16 11 N -0.69 -30.36 6.49 -517.94 -3.36 -33.72 16 12 C 0.21 11.51 5.44 85.56 0.47 11.98 16 13 C -0.54 -31.04 9.32 25.60 0.24 -30.80 16 14 H 0.07 3.70 7.81 -2.91 -0.02 3.68 16 15 C 0.00 0.03 5.46 84.65 0.46 0.50 16 16 N -0.93 -57.05 13.29 21.45 0.28 -56.77 16 17 Si 0.98 44.41 29.54 68.60 2.03 46.43 16 18 H -0.26 -11.37 7.11 99.48 0.71 -10.66 16 19 H -0.28 -12.16 7.11 99.48 0.71 -11.45 16 20 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 21 H 0.06 1.09 6.17 -2.39 -0.01 1.08 16 22 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 23 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 24 H 0.06 1.13 8.14 -2.38 -0.02 1.11 16 25 H 0.12 1.63 8.14 -2.39 -0.02 1.62 16 26 H 0.11 1.96 8.14 -2.39 -0.02 1.94 16 27 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 28 H 0.08 2.19 6.37 -2.39 -0.02 2.18 16 29 H 0.04 0.94 8.14 -2.39 -0.02 0.92 16 30 H 0.03 1.05 8.12 -2.38 -0.02 1.03 16 31 H 0.09 2.40 5.77 -2.39 -0.01 2.39 16 32 H 0.02 0.74 8.14 -2.38 -0.02 0.72 16 33 H 0.05 2.07 6.51 -2.39 -0.02 2.06 16 34 H 0.34 13.84 8.72 -89.69 -0.78 13.05 16 35 H -0.04 -2.28 8.14 -2.38 -0.02 -2.30 16 36 H 0.00 -0.10 8.14 -2.39 -0.02 -0.12 16 37 H 0.27 15.11 8.31 -92.70 -0.77 14.34 16 Total: -1.00 -65.58 294.42 -2.09 -67.68 By element: Atomic # 1 Polarization: 14.03 SS G_CDS: 0.25 Total: 14.28 kcal Atomic # 6 Polarization: -13.48 SS G_CDS: 4.27 Total: -9.21 kcal Atomic # 7 Polarization: -101.37 SS G_CDS: -7.03 Total: -108.40 kcal Atomic # 8 Polarization: -9.17 SS G_CDS: -1.61 Total: -10.79 kcal Atomic # 14 Polarization: 44.41 SS G_CDS: 2.03 Total: 46.43 kcal Total: -65.58 -2.09 -67.68 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591734492.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.530 kcal (2) G-P(sol) polarization free energy of solvation -65.583 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.053 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.093 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.676 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.145 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds