Wall clock time and date at job start Thu Apr 9 2020 11:59:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86803 * 119.99942 * 2 1 4 4 H 1.48503 * 109.46958 * 240.00131 * 3 2 1 5 5 H 1.48504 * 109.47213 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47313 * 119.99965 * 3 2 1 7 7 C 1.37874 * 120.00175 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00227 * 179.97438 * 7 2 1 9 9 C 1.50704 * 119.99951 * 0.02562 * 7 2 1 10 10 N 1.46897 * 109.46927 * 180.02562 * 9 7 2 11 11 C 1.46905 * 110.99642 * 180.02562 * 10 9 7 12 12 C 1.52994 * 109.46979 * 180.02562 * 11 10 9 13 13 N 1.46905 * 109.46979 * 179.97438 * 12 11 10 14 14 C 1.48032 * 110.99969 * 169.99974 * 13 12 11 15 15 C 1.50980 * 113.13021 * 83.99537 * 14 13 12 16 16 C 1.54708 * 109.07681 * 92.04806 * 15 14 13 17 17 O 1.36615 * 110.79484 * 286.64287 * 16 15 14 18 18 C 1.43453 * 117.83115 * 61.03624 * 17 16 15 19 19 C 1.47393 * 110.99638 * 297.17900 * 13 12 11 20 20 H 0.97010 * 119.99953 * 0.02562 * 1 2 3 21 21 H 1.09001 * 109.46743 * 59.99657 * 9 7 2 22 22 H 1.09005 * 109.46541 * 300.00235 * 9 7 2 23 23 H 1.00897 * 110.99763 * 303.95035 * 10 9 7 24 24 H 1.09002 * 109.47204 * 59.99460 * 11 10 9 25 25 H 1.08998 * 109.46797 * 299.99490 * 11 10 9 26 26 H 1.09002 * 109.47621 * 59.99682 * 12 11 10 27 27 H 1.09006 * 109.47222 * 299.99459 * 12 11 10 28 28 H 1.09007 * 108.74869 * 323.05415 * 14 13 12 29 29 H 1.08998 * 108.74936 * 204.93726 * 14 13 12 30 30 H 1.08998 * 109.53992 * 332.16381 * 15 14 13 31 31 H 1.09003 * 109.60353 * 211.96164 * 15 14 13 32 32 H 1.08997 * 109.21263 * 166.30937 * 16 15 14 33 33 H 1.08994 * 109.21404 * 46.98177 * 16 15 14 34 34 H 1.08998 * 109.83940 * 37.44361 * 18 17 16 35 35 H 1.09002 * 109.83724 * 158.40830 * 18 17 16 36 36 H 1.09006 * 109.06652 * 313.80259 * 19 13 12 37 37 H 1.08997 * 109.06668 * 72.80738 * 19 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6964 -1.2126 5 1 1.2841 2.7465 -0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4992 -0.0017 10 7 2.2057 -3.6156 -0.0015 11 6 1.5053 -4.9070 -0.0032 12 6 2.5302 -6.0429 -0.0022 13 7 1.8299 -7.3343 -0.0034 14 6 2.7737 -8.4494 -0.2425 15 6 3.4707 -8.9160 1.0129 16 6 2.6555 -10.0690 1.6450 17 8 1.5159 -9.5936 2.2294 18 6 0.5615 -8.9268 1.3913 19 6 1.0242 -7.4992 1.2198 20 1 -0.4850 0.8401 -0.0004 21 1 0.6247 -2.5562 -0.8920 22 1 0.6240 -2.5574 0.8881 23 1 2.8411 -3.5482 -0.7823 24 1 0.8813 -4.9808 -0.8939 25 1 0.8796 -4.9821 0.8861 26 1 3.1539 -5.9690 0.8887 27 1 3.1564 -5.9681 -0.8913 28 1 3.5262 -8.1236 -0.9607 29 1 2.2242 -9.2878 -0.6704 30 1 3.5411 -8.0892 1.7196 31 1 4.4714 -9.2702 0.7654 32 1 3.2644 -10.5671 2.3994 33 1 2.3884 -10.7867 0.8695 34 1 0.5139 -9.4195 0.4203 35 1 -0.4207 -8.9430 1.8638 36 1 1.6251 -7.2136 2.0832 37 1 0.1521 -6.8479 1.1622 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591762860.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 11:59:23 Heat of formation + Delta-G solvation = -41.116190 kcal Electronic energy + Delta-G solvation = -16082.490264 eV Core-core repulsion = 13473.712214 eV Total energy + Delta-G solvation = -2608.778049 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 228.158 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.11576 -36.98851 -34.96361 -32.77162 -32.31777 -29.96458 -27.57379 -26.28297 -24.95046 -22.21086 -22.02087 -21.21627 -19.78669 -16.88380 -16.70509 -16.43857 -16.04169 -15.29080 -14.96783 -14.55477 -14.16200 -13.72162 -13.24211 -12.86233 -12.74660 -12.52116 -12.12885 -11.88400 -11.76265 -11.36096 -11.21352 -11.03684 -10.71050 -10.63803 -10.52403 -10.38297 -9.87122 -9.69318 -9.18285 -8.46751 -8.22521 -7.28948 -6.01911 -4.04126 3.34521 3.38153 3.41321 3.60318 3.83777 4.44641 4.58477 4.75078 4.82104 5.00669 5.09437 5.21718 5.30695 5.33772 5.37423 5.43504 5.54444 5.64781 5.69089 5.77210 5.84856 5.93549 6.00857 6.05576 6.37735 6.45087 7.01978 7.08988 7.28089 7.41142 7.44007 7.79164 8.13967 8.39903 8.62368 9.04775 9.60675 11.09219 Molecular weight = 228.16amu Principal moments of inertia in cm(-1) A = 0.061563 B = 0.004234 C = 0.004113 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 454.708838 B = 6612.169114 C = 6806.803229 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.056 3.944 3 Si 0.900 3.100 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.276 1.276 7 C -0.516 4.516 8 H 0.062 0.938 9 C 0.195 3.805 10 N -0.692 5.692 11 C 0.062 3.938 12 C 0.062 3.938 13 N -0.544 5.544 14 C 0.052 3.948 15 C -0.197 4.197 16 C 0.077 3.923 17 O -0.388 6.388 18 C 0.064 3.936 19 C 0.023 3.977 20 H 0.262 0.738 21 H -0.013 1.013 22 H 0.027 0.973 23 H 0.327 0.673 24 H 0.026 0.974 25 H 0.062 0.938 26 H 0.040 0.960 27 H 0.069 0.931 28 H 0.072 0.928 29 H 0.069 0.931 30 H 0.074 0.926 31 H 0.076 0.924 32 H 0.090 0.910 33 H 0.037 0.963 34 H 0.064 0.936 35 H 0.102 0.898 36 H 0.051 0.949 37 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.919 -19.355 0.746 19.762 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.146 4.146 3 Si 0.728 3.272 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.554 4.554 8 H 0.080 0.920 9 C 0.069 3.931 10 N -0.322 5.322 11 C -0.068 4.068 12 C -0.066 4.066 13 N -0.269 5.269 14 C -0.076 4.076 15 C -0.236 4.236 16 C -0.001 4.001 17 O -0.306 6.306 18 C -0.012 4.012 19 C -0.105 4.105 20 H 0.072 0.928 21 H 0.005 0.995 22 H 0.045 0.955 23 H 0.143 0.857 24 H 0.044 0.956 25 H 0.080 0.920 26 H 0.058 0.942 27 H 0.088 0.912 28 H 0.090 0.910 29 H 0.088 0.912 30 H 0.093 0.907 31 H 0.095 0.905 32 H 0.108 0.892 33 H 0.055 0.945 34 H 0.083 0.917 35 H 0.120 0.880 36 H 0.069 0.931 37 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 3.471 -19.232 1.242 19.583 hybrid contribution 0.742 1.016 -0.592 1.390 sum 4.213 -18.216 0.650 18.708 Atomic orbital electron populations 1.69958 1.06094 1.26901 1.50803 1.24992 0.94883 0.99367 0.95321 0.86532 0.79413 0.82628 0.78642 1.20260 1.21317 1.20155 1.21156 0.93479 0.90276 1.50509 0.92024 1.19536 0.90555 0.87241 0.95794 1.60650 1.21375 1.01332 1.48878 1.21835 0.95228 0.89523 1.00209 1.22136 0.95948 0.87695 1.00856 1.62194 1.25325 1.02267 1.37156 1.22020 0.94646 0.94345 0.96589 1.22902 1.00587 1.00516 0.99597 1.21813 0.86447 0.94048 0.97783 1.86448 1.30033 1.75453 1.38685 1.22604 0.91945 0.91441 0.95207 1.22554 0.98784 0.97621 0.91525 0.92845 0.99524 0.95484 0.85658 0.95569 0.91953 0.94185 0.91204 0.90992 0.91245 0.90735 0.90533 0.89243 0.94471 0.91734 0.88045 0.93087 0.89461 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.21 13.29 55.43 0.74 -26.47 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 3 Si 0.90 21.91 29.54 -169.99 -5.02 16.89 16 4 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 5 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 6 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 7 C -0.52 -14.89 9.32 -34.44 -0.32 -15.21 16 8 H 0.06 1.74 7.81 -52.49 -0.41 1.33 16 9 C 0.20 5.27 5.44 -4.98 -0.03 5.24 16 10 N -0.69 -15.26 6.49 -115.06 -0.75 -16.01 16 11 C 0.06 1.15 5.54 -3.82 -0.02 1.13 16 12 C 0.06 0.93 5.09 -3.82 -0.02 0.91 16 13 N -0.54 -7.16 4.77 -235.71 -1.12 -8.29 16 14 C 0.05 0.56 5.14 -4.21 -0.02 0.54 16 15 C -0.20 -1.94 5.67 -26.85 -0.15 -2.09 16 16 C 0.08 0.73 6.43 38.06 0.24 0.97 16 17 O -0.39 -4.49 9.96 -21.73 -0.22 -4.71 16 18 C 0.06 0.67 6.50 36.18 0.24 0.91 16 19 C 0.02 0.29 4.42 -4.54 -0.02 0.27 16 20 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 21 H -0.01 -0.37 8.14 -51.93 -0.42 -0.79 16 22 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 23 H 0.33 6.84 8.72 -39.29 -0.34 6.50 16 24 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 25 H 0.06 1.18 6.76 -51.93 -0.35 0.83 16 26 H 0.04 0.63 7.71 -51.93 -0.40 0.23 16 27 H 0.07 1.00 7.80 -51.93 -0.41 0.60 16 28 H 0.07 0.74 7.65 -51.92 -0.40 0.35 16 29 H 0.07 0.69 6.54 -51.93 -0.34 0.35 16 30 H 0.07 0.89 6.83 -51.93 -0.35 0.53 16 31 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.09 0.73 8.14 -51.93 -0.42 0.30 16 33 H 0.04 0.31 7.72 -51.93 -0.40 -0.09 16 34 H 0.06 0.64 6.78 -51.93 -0.35 0.29 16 35 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16 36 H 0.05 0.71 7.05 -51.93 -0.37 0.35 16 37 H 0.09 1.13 7.07 -51.93 -0.37 0.77 16 LS Contribution 289.96 15.07 4.37 4.37 Total: -1.00 -30.79 289.96 -8.36 -39.15 By element: Atomic # 1 Polarization: 7.05 SS G_CDS: -6.16 Total: 0.90 kcal Atomic # 6 Polarization: -5.63 SS G_CDS: -0.20 Total: -5.83 kcal Atomic # 7 Polarization: -49.63 SS G_CDS: -1.13 Total: -50.77 kcal Atomic # 8 Polarization: -4.49 SS G_CDS: -0.22 Total: -4.71 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -30.79 -8.36 -39.15 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591762860.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.965 kcal (2) G-P(sol) polarization free energy of solvation -30.791 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.756 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.360 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.151 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.116 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds