Wall clock time and date at job start Thu Apr 9 2020 11:59:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86803 * 119.99942 * 2 1 4 4 H 1.48503 * 109.46958 * 240.00131 * 3 2 1 5 5 H 1.48504 * 109.47213 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47313 * 119.99965 * 3 2 1 7 7 C 1.37874 * 120.00175 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00227 * 179.97438 * 7 2 1 9 9 C 1.50704 * 119.99951 * 0.02562 * 7 2 1 10 10 N 1.46897 * 109.46927 * 180.02562 * 9 7 2 11 11 C 1.46905 * 110.99642 * 180.02562 * 10 9 7 12 12 C 1.52994 * 109.46979 * 180.02562 * 11 10 9 13 13 N 1.46905 * 109.46979 * 179.97438 * 12 11 10 14 14 C 1.48032 * 110.99969 * 169.99974 * 13 12 11 15 15 C 1.50980 * 113.13021 * 83.99537 * 14 13 12 16 16 C 1.54708 * 109.07681 * 92.04806 * 15 14 13 17 17 O 1.36615 * 110.79484 * 286.64287 * 16 15 14 18 18 C 1.43453 * 117.83115 * 61.03624 * 17 16 15 19 19 C 1.47393 * 110.99638 * 297.17900 * 13 12 11 20 20 H 0.97010 * 119.99953 * 0.02562 * 1 2 3 21 21 H 1.09001 * 109.46743 * 59.99657 * 9 7 2 22 22 H 1.09005 * 109.46541 * 300.00235 * 9 7 2 23 23 H 1.00897 * 110.99763 * 303.95035 * 10 9 7 24 24 H 1.09002 * 109.47204 * 59.99460 * 11 10 9 25 25 H 1.08998 * 109.46797 * 299.99490 * 11 10 9 26 26 H 1.09002 * 109.47621 * 59.99682 * 12 11 10 27 27 H 1.09006 * 109.47222 * 299.99459 * 12 11 10 28 28 H 1.09007 * 108.74869 * 323.05415 * 14 13 12 29 29 H 1.08998 * 108.74936 * 204.93726 * 14 13 12 30 30 H 1.08998 * 109.53992 * 332.16381 * 15 14 13 31 31 H 1.09003 * 109.60353 * 211.96164 * 15 14 13 32 32 H 1.08997 * 109.21263 * 166.30937 * 16 15 14 33 33 H 1.08994 * 109.21404 * 46.98177 * 16 15 14 34 34 H 1.08998 * 109.83940 * 37.44361 * 18 17 16 35 35 H 1.09002 * 109.83724 * 158.40830 * 18 17 16 36 36 H 1.09006 * 109.06652 * 313.80259 * 19 13 12 37 37 H 1.08997 * 109.06668 * 72.80738 * 19 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6964 -1.2126 5 1 1.2841 2.7465 -0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4992 -0.0017 10 7 2.2057 -3.6156 -0.0015 11 6 1.5053 -4.9070 -0.0032 12 6 2.5302 -6.0429 -0.0022 13 7 1.8299 -7.3343 -0.0034 14 6 2.7737 -8.4494 -0.2425 15 6 3.4707 -8.9160 1.0129 16 6 2.6555 -10.0690 1.6450 17 8 1.5159 -9.5936 2.2294 18 6 0.5615 -8.9268 1.3913 19 6 1.0242 -7.4992 1.2198 20 1 -0.4850 0.8401 -0.0004 21 1 0.6247 -2.5562 -0.8920 22 1 0.6240 -2.5574 0.8881 23 1 2.8411 -3.5482 -0.7823 24 1 0.8813 -4.9808 -0.8939 25 1 0.8796 -4.9821 0.8861 26 1 3.1539 -5.9690 0.8887 27 1 3.1564 -5.9681 -0.8913 28 1 3.5262 -8.1236 -0.9607 29 1 2.2242 -9.2878 -0.6704 30 1 3.5411 -8.0892 1.7196 31 1 4.4714 -9.2702 0.7654 32 1 3.2644 -10.5671 2.3994 33 1 2.3884 -10.7867 0.8695 34 1 0.5139 -9.4195 0.4203 35 1 -0.4207 -8.9430 1.8638 36 1 1.6251 -7.2136 2.0832 37 1 0.1521 -6.8479 1.1622 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591762860.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 11:59:23 Heat of formation + Delta-G solvation = -64.592066 kcal Electronic energy + Delta-G solvation = -16083.508254 eV Core-core repulsion = 13473.712214 eV Total energy + Delta-G solvation = -2609.796040 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 228.158 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.00379 -38.19832 -36.61302 -34.58783 -33.44589 -31.34567 -29.07867 -27.45936 -26.39820 -23.75711 -23.12247 -22.84365 -20.81287 -18.59292 -17.77834 -17.52159 -17.00807 -16.93758 -16.54263 -15.91933 -15.46807 -15.06247 -14.52344 -14.32095 -14.10007 -13.75609 -13.64481 -13.36426 -12.95634 -12.72654 -12.68078 -12.52080 -12.28073 -12.11363 -11.95758 -11.63617 -11.37181 -11.24619 -10.66960 -10.52842 -9.29790 -9.17980 -8.23697 -6.35800 1.41205 1.45234 1.53311 2.39149 2.70109 2.88604 3.09515 3.70117 3.80362 3.86436 4.02689 4.04491 4.23538 4.27835 4.30379 4.41026 4.53570 4.58092 4.71119 4.83092 4.89096 4.94209 4.95594 4.97152 5.04241 5.08622 5.22431 5.24768 5.58707 5.93421 6.01625 6.06988 6.39686 6.61445 6.68766 6.86206 7.35350 8.87987 Molecular weight = 228.16amu Principal moments of inertia in cm(-1) A = 0.061563 B = 0.004234 C = 0.004113 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 454.708838 B = 6612.169114 C = 6806.803229 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C 0.001 3.999 3 Si 0.976 3.024 4 H -0.265 1.265 5 H -0.282 1.282 6 H -0.268 1.268 7 C -0.540 4.540 8 H 0.066 0.934 9 C 0.209 3.791 10 N -0.689 5.689 11 C 0.067 3.933 12 C 0.077 3.923 13 N -0.550 5.550 14 C 0.050 3.950 15 C -0.191 4.191 16 C 0.071 3.929 17 O -0.404 6.404 18 C 0.068 3.932 19 C 0.025 3.975 20 H 0.266 0.734 21 H -0.038 1.038 22 H -0.003 1.003 23 H 0.336 0.664 24 H 0.020 0.980 25 H 0.052 0.948 26 H 0.032 0.968 27 H 0.081 0.919 28 H 0.078 0.922 29 H 0.084 0.916 30 H 0.050 0.950 31 H 0.097 0.903 32 H 0.103 0.897 33 H 0.054 0.946 34 H 0.075 0.925 35 H 0.116 0.884 36 H 0.033 0.967 37 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.230 -20.088 0.351 20.761 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.197 4.197 3 Si 0.800 3.200 4 H -0.189 1.189 5 H -0.207 1.207 6 H -0.193 1.193 7 C -0.578 4.578 8 H 0.084 0.916 9 C 0.082 3.918 10 N -0.320 5.320 11 C -0.062 4.062 12 C -0.051 4.051 13 N -0.276 5.276 14 C -0.077 4.077 15 C -0.230 4.230 16 C -0.007 4.007 17 O -0.323 6.323 18 C -0.007 4.007 19 C -0.103 4.103 20 H 0.075 0.925 21 H -0.021 1.021 22 H 0.016 0.984 23 H 0.154 0.846 24 H 0.038 0.962 25 H 0.070 0.930 26 H 0.050 0.950 27 H 0.099 0.901 28 H 0.097 0.903 29 H 0.102 0.898 30 H 0.069 0.931 31 H 0.115 0.885 32 H 0.121 0.879 33 H 0.072 0.928 34 H 0.093 0.907 35 H 0.134 0.866 36 H 0.051 0.949 37 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 4.801 -20.002 0.842 20.587 hybrid contribution 0.311 1.167 -0.468 1.295 sum 5.111 -18.835 0.374 19.520 Atomic orbital electron populations 1.70093 1.07901 1.28178 1.51286 1.25994 0.95815 1.03524 0.94405 0.85337 0.78073 0.77360 0.79221 1.18927 1.20698 1.19305 1.21521 0.93883 0.91344 1.51021 0.91573 1.19191 0.90609 0.88889 0.93150 1.60510 1.20625 1.01548 1.49353 1.21828 0.95942 0.89092 0.99386 1.21882 0.94691 0.87561 1.00996 1.62170 1.25936 1.02119 1.37343 1.22129 0.94607 0.93746 0.97249 1.22847 1.01749 0.99927 0.98476 1.22003 0.85903 0.94051 0.98709 1.86437 1.30777 1.75494 1.39542 1.22624 0.92366 0.89831 0.95883 1.22551 0.97997 0.99120 0.90636 0.92527 1.02080 0.98440 0.84646 0.96159 0.92955 0.94974 0.90067 0.90309 0.89808 0.93131 0.88496 0.87940 0.92817 0.90707 0.86613 0.94874 0.90524 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.40 13.29 21.45 0.28 -57.11 16 2 C 0.00 0.05 5.46 84.65 0.46 0.52 16 3 Si 0.98 44.64 29.54 68.60 2.03 46.67 16 4 H -0.26 -11.51 7.11 99.48 0.71 -10.80 16 5 H -0.28 -12.52 7.11 99.48 0.71 -11.82 16 6 H -0.27 -11.86 7.11 99.48 0.71 -11.16 16 7 C -0.54 -31.47 9.32 25.60 0.24 -31.23 16 8 H 0.07 3.71 7.81 -2.91 -0.02 3.69 16 9 C 0.21 11.65 5.44 85.56 0.47 12.12 16 10 N -0.69 -30.87 6.49 -517.92 -3.36 -34.23 16 11 C 0.07 2.53 5.54 86.30 0.48 3.01 16 12 C 0.08 2.28 5.09 86.30 0.44 2.72 16 13 N -0.55 -13.97 4.77 -899.64 -4.29 -18.26 16 14 C 0.05 0.96 5.14 85.43 0.44 1.40 16 15 C -0.19 -3.39 5.67 30.52 0.17 -3.22 16 16 C 0.07 1.17 6.43 72.56 0.47 1.64 16 17 O -0.40 -8.72 9.96 -100.67 -1.00 -9.72 16 18 C 0.07 1.35 6.50 71.35 0.46 1.81 16 19 C 0.02 0.62 4.42 85.57 0.38 0.99 16 20 H 0.27 15.29 8.31 -92.70 -0.77 14.52 16 21 H -0.04 -2.29 8.14 -2.39 -0.02 -2.31 16 22 H 0.00 -0.15 8.14 -2.38 -0.02 -0.17 16 23 H 0.34 14.04 8.72 -89.70 -0.78 13.26 16 24 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 25 H 0.05 2.05 6.76 -2.39 -0.02 2.04 16 26 H 0.03 1.01 7.71 -2.39 -0.02 0.99 16 27 H 0.08 2.22 7.80 -2.38 -0.02 2.20 16 28 H 0.08 1.43 7.65 -2.38 -0.02 1.41 16 29 H 0.08 1.42 6.54 -2.39 -0.02 1.40 16 30 H 0.05 1.16 6.83 -2.39 -0.02 1.15 16 31 H 0.10 1.33 8.14 -2.39 -0.02 1.31 16 32 H 0.10 1.42 8.14 -2.39 -0.02 1.40 16 33 H 0.05 0.73 7.72 -2.39 -0.02 0.71 16 34 H 0.07 1.32 6.78 -2.39 -0.02 1.31 16 35 H 0.12 1.92 8.14 -2.39 -0.02 1.90 16 36 H 0.03 0.94 7.05 -2.38 -0.02 0.93 16 37 H 0.08 2.04 7.07 -2.39 -0.02 2.02 16 Total: -1.00 -66.07 289.96 -2.08 -68.15 By element: Atomic # 1 Polarization: 14.48 SS G_CDS: 0.26 Total: 14.74 kcal Atomic # 6 Polarization: -14.24 SS G_CDS: 4.00 Total: -10.24 kcal Atomic # 7 Polarization: -102.23 SS G_CDS: -7.37 Total: -109.60 kcal Atomic # 8 Polarization: -8.72 SS G_CDS: -1.00 Total: -9.72 kcal Atomic # 14 Polarization: 44.64 SS G_CDS: 2.03 Total: 46.67 kcal Total: -66.07 -2.08 -68.15 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591762860.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.561 kcal (2) G-P(sol) polarization free energy of solvation -66.069 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.508 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.084 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.153 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.592 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds