Wall clock time and date at job start Thu Apr 9 2020 11:59:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48507 * 109.47043 * 269.99976 * 3 2 1 5 5 H 1.48494 * 109.47326 * 29.99887 * 3 2 1 6 6 H 1.48497 * 109.47436 * 150.00165 * 3 2 1 7 7 C 1.37883 * 119.99532 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99815 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00023 * 359.97438 * 7 2 1 10 10 N 1.46901 * 109.46943 * 180.02562 * 9 7 2 11 11 C 1.46905 * 110.99870 * 180.02562 * 10 9 7 12 12 C 1.52993 * 109.47039 * 180.02562 * 11 10 9 13 13 H 1.08998 * 109.47408 * 60.00073 * 12 11 10 14 14 O 1.42906 * 109.47257 * 300.00098 * 12 11 10 15 15 C 1.53004 * 109.47360 * 180.02562 * 12 11 10 16 16 N 1.46897 * 109.47420 * 185.00010 * 15 12 11 17 17 C 1.48529 * 111.00189 * 52.60203 * 16 15 12 18 18 C 1.54935 * 103.23098 * 159.72125 * 17 16 15 19 19 C 1.54592 * 102.91878 * 322.58895 * 18 17 16 20 20 C 1.47899 * 111.00202 * 169.99894 * 16 15 12 21 21 H 0.97001 * 119.99132 * 359.97438 * 1 2 3 22 22 H 1.09004 * 109.46763 * 60.00533 * 9 7 2 23 23 H 1.08995 * 109.47483 * 300.00190 * 9 7 2 24 24 H 1.00901 * 111.00067 * 303.95401 * 10 9 7 25 25 H 1.09001 * 109.46798 * 300.00327 * 11 10 9 26 26 H 1.08998 * 109.46961 * 60.00043 * 11 10 9 27 27 H 0.96709 * 113.99630 * 299.99873 * 14 12 11 28 28 H 1.09001 * 109.46559 * 305.00226 * 15 12 11 29 29 H 1.08997 * 109.47028 * 64.99590 * 15 12 11 30 30 H 1.09010 * 110.66818 * 278.15691 * 17 16 15 31 31 H 1.09001 * 110.66825 * 41.28638 * 17 16 15 32 32 H 1.08994 * 110.72934 * 204.22828 * 18 17 16 33 33 H 1.09002 * 110.72493 * 80.94187 * 18 17 16 34 34 H 1.08999 * 110.30735 * 263.03690 * 19 18 17 35 35 H 1.09004 * 110.31155 * 140.87077 * 19 18 17 36 36 H 1.08998 * 109.91693 * 333.50894 * 20 16 15 37 37 H 1.09005 * 109.91950 * 94.60239 * 20 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4469 2.6526 0.7000 6 1 3.5468 1.4400 0.7000 7 6 2.0045 -1.1942 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 7 2.2055 -3.6158 -0.0005 11 6 1.5050 -4.9071 -0.0011 12 6 2.5298 -6.0431 -0.0005 13 1 3.1541 -5.9688 0.8899 14 8 3.3500 -5.9455 -1.1667 15 6 1.8004 -7.3881 -0.0018 16 7 2.7796 -8.4764 0.1196 17 6 3.6733 -8.2608 1.2862 18 6 4.2375 -9.6761 1.5671 19 6 3.0266 -10.5938 1.2816 20 6 2.1063 -9.7708 0.3613 21 1 -0.4849 0.8401 0.0004 22 1 0.6240 -2.5566 -0.8904 23 1 0.6246 -2.5571 0.8896 24 1 2.8403 -3.5488 -0.7819 25 1 0.8798 -4.9817 0.8886 26 1 0.8805 -4.9812 -0.8914 27 1 2.8598 -6.0039 -1.9983 28 1 1.1082 -7.4267 0.8393 29 1 1.2464 -7.5000 -0.9337 30 1 4.4771 -7.5695 1.0326 31 1 3.1065 -7.8957 2.1427 32 1 4.5532 -9.7663 2.6064 33 1 5.0618 -9.9039 0.8912 34 1 2.5112 -10.8398 2.2100 35 1 3.3518 -11.5031 0.7761 36 1 1.1459 -9.6043 0.8492 37 1 1.9569 -10.2938 -0.5834 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592430263.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 11:59:28 Heat of formation + Delta-G solvation = -79.914363 kcal Electronic energy + Delta-G solvation = -15918.815347 eV Core-core repulsion = 13308.354882 eV Total energy + Delta-G solvation = -2610.460464 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 228.158 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -40.27355 -38.42290 -36.33413 -34.39780 -33.32805 -30.57064 -29.77471 -28.16277 -25.42997 -23.49615 -22.92499 -21.68478 -21.38299 -18.73129 -17.61932 -17.12129 -17.00470 -16.68982 -16.21811 -15.65901 -15.40263 -14.94883 -14.57147 -14.25254 -14.12171 -13.45765 -13.19482 -13.12597 -12.99619 -12.64559 -12.60550 -12.41387 -12.21313 -12.07911 -12.01420 -11.67937 -11.45098 -11.40429 -10.75110 -10.68178 -9.36945 -9.14326 -8.24745 -6.36105 1.40748 1.42548 1.54711 2.39131 2.87955 3.08535 3.42296 3.58882 3.76057 3.84867 4.05628 4.10902 4.18112 4.24485 4.34588 4.44625 4.62576 4.64853 4.70849 4.76078 4.93093 4.98120 5.01410 5.07662 5.15289 5.21076 5.22773 5.32176 5.59119 5.94041 5.98345 6.04390 6.41898 6.69116 6.84577 6.90372 7.35057 8.86952 Molecular weight = 228.16amu Principal moments of inertia in cm(-1) A = 0.064124 B = 0.004174 C = 0.004088 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 436.547199 B = 6706.905936 C = 6846.895344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.001 3.999 3 Si 0.975 3.025 4 H -0.270 1.270 5 H -0.280 1.280 6 H -0.265 1.265 7 C -0.539 4.539 8 H 0.062 0.938 9 C 0.207 3.793 10 N -0.687 5.687 11 C 0.030 3.970 12 C 0.127 3.873 13 H 0.092 0.908 14 O -0.560 6.560 15 C 0.024 3.976 16 N -0.520 5.520 17 C 0.027 3.973 18 C -0.120 4.120 19 C -0.127 4.127 20 C 0.029 3.971 21 H 0.266 0.734 22 H -0.038 1.038 23 H 0.000 1.000 24 H 0.339 0.661 25 H 0.066 0.934 26 H 0.027 0.973 27 H 0.381 0.619 28 H 0.048 0.952 29 H 0.087 0.913 30 H 0.072 0.928 31 H 0.042 0.958 32 H 0.083 0.917 33 H 0.072 0.928 34 H 0.075 0.925 35 H 0.082 0.918 36 H 0.045 0.955 37 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.611 -20.082 1.095 20.634 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.197 4.197 3 Si 0.799 3.201 4 H -0.196 1.196 5 H -0.205 1.205 6 H -0.190 1.190 7 C -0.577 4.577 8 H 0.081 0.919 9 C 0.080 3.920 10 N -0.318 5.318 11 C -0.101 4.101 12 C 0.067 3.933 13 H 0.110 0.890 14 O -0.366 6.366 15 C -0.106 4.106 16 N -0.245 5.245 17 C -0.101 4.101 18 C -0.158 4.158 19 C -0.165 4.165 20 C -0.099 4.099 21 H 0.075 0.925 22 H -0.020 1.020 23 H 0.018 0.982 24 H 0.157 0.843 25 H 0.085 0.915 26 H 0.045 0.955 27 H 0.229 0.771 28 H 0.066 0.934 29 H 0.105 0.895 30 H 0.090 0.910 31 H 0.060 0.940 32 H 0.102 0.898 33 H 0.091 0.909 34 H 0.094 0.906 35 H 0.101 0.899 36 H 0.063 0.937 37 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 5.291 -19.922 1.736 20.686 hybrid contribution -1.426 1.035 -0.530 1.840 sum 3.866 -18.887 1.205 19.316 Atomic orbital electron populations 1.70089 1.07795 1.28088 1.51434 1.25972 0.95835 1.03444 0.94441 0.85299 0.78454 0.77779 0.78569 1.19556 1.20522 1.18966 1.21546 0.93785 0.91516 1.50817 0.91935 1.19227 0.90631 0.88974 0.93203 1.60451 1.20248 1.01251 1.49857 1.22621 0.96270 0.90757 1.00436 1.21830 0.91318 0.90760 0.89426 0.89002 1.86567 1.37913 1.95965 1.16175 1.22907 0.94070 0.91176 1.02404 1.64764 1.17806 1.01885 1.40002 1.23290 0.96615 0.98680 0.91466 1.22477 0.98095 0.93066 1.02207 1.22399 0.95815 0.98713 0.99556 1.22992 0.96416 0.90323 1.00132 0.92529 1.02039 0.98210 0.84338 0.91550 0.95476 0.77074 0.93426 0.89488 0.90990 0.93986 0.89801 0.90907 0.90616 0.89910 0.93680 0.90002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.05 13.29 21.45 0.28 -56.77 16 2 C 0.00 0.08 5.46 84.66 0.46 0.54 16 3 Si 0.98 44.93 29.54 68.60 2.03 46.96 16 4 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 5 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 6 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 7 C -0.54 -31.60 9.32 25.60 0.24 -31.36 16 8 H 0.06 3.59 7.81 -2.91 -0.02 3.57 16 9 C 0.21 11.43 5.44 85.56 0.47 11.90 16 10 N -0.69 -30.74 6.49 -517.93 -3.36 -34.11 16 11 C 0.03 1.05 5.39 86.30 0.47 1.51 16 12 C 0.13 3.65 2.96 30.59 0.09 3.74 16 13 H 0.09 2.89 6.52 -2.39 -0.02 2.87 16 14 O -0.56 -16.56 12.62 -148.98 -1.88 -18.45 16 15 C 0.02 0.55 4.66 86.31 0.40 0.95 16 16 N -0.52 -11.73 5.34 -883.03 -4.72 -16.45 16 17 C 0.03 0.59 5.09 86.65 0.44 1.03 16 18 C -0.12 -2.00 7.06 31.80 0.22 -1.77 16 19 C -0.13 -1.84 6.93 31.47 0.22 -1.62 16 20 C 0.03 0.52 6.69 86.45 0.58 1.10 16 21 H 0.27 15.17 8.31 -92.71 -0.77 14.39 16 22 H -0.04 -2.23 8.14 -2.39 -0.02 -2.25 16 23 H 0.00 -0.01 8.14 -2.39 -0.02 -0.03 16 24 H 0.34 14.83 8.11 -89.69 -0.73 14.10 16 25 H 0.07 2.37 8.14 -2.39 -0.02 2.35 16 26 H 0.03 0.92 8.14 -2.39 -0.02 0.91 16 27 H 0.38 8.89 9.05 -74.05 -0.67 8.22 16 28 H 0.05 1.08 7.81 -2.39 -0.02 1.06 16 29 H 0.09 1.87 8.14 -2.39 -0.02 1.85 16 30 H 0.07 1.80 7.56 -2.38 -0.02 1.78 16 31 H 0.04 0.92 8.01 -2.39 -0.02 0.90 16 32 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 33 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 34 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 35 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 36 H 0.04 0.78 7.57 -2.39 -0.02 0.76 16 37 H 0.08 1.37 8.14 -2.38 -0.02 1.35 16 Total: -1.00 -66.45 299.77 -4.42 -70.86 By element: Atomic # 1 Polarization: 22.29 SS G_CDS: -0.35 Total: 21.93 kcal Atomic # 6 Polarization: -17.57 SS G_CDS: 3.59 Total: -13.99 kcal Atomic # 7 Polarization: -99.53 SS G_CDS: -7.80 Total: -107.32 kcal Atomic # 8 Polarization: -16.56 SS G_CDS: -1.88 Total: -18.45 kcal Atomic # 14 Polarization: 44.93 SS G_CDS: 2.03 Total: 46.96 kcal Total: -66.45 -4.42 -70.86 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592430263.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.051 kcal (2) G-P(sol) polarization free energy of solvation -66.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.497 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.417 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.863 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.914 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds