Wall clock time and date at job start Thu Apr 9 2020 11:59:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53005 * 109.46800 * 2 1 4 4 C 1.50694 * 109.47246 * 239.99919 * 2 1 3 5 5 H 1.08001 * 120.00063 * 239.99580 * 4 2 1 6 6 C 1.37879 * 120.00270 * 59.99601 * 4 2 1 7 7 N 1.31515 * 119.99686 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 120.00239 * 179.97438 * 6 4 2 9 9 H 1.48499 * 109.47152 * 0.02562 * 8 6 4 10 10 H 1.48504 * 109.47010 * 120.00438 * 8 6 4 11 11 H 1.48502 * 109.47209 * 240.00145 * 8 6 4 12 12 C 1.52995 * 109.47244 * 119.99590 * 2 1 3 13 13 S 1.81398 * 109.47423 * 300.00486 * 12 2 1 14 14 C 1.81397 * 103.00228 * 179.97438 * 13 12 2 15 15 C 1.54894 * 110.48308 * 68.24091 * 14 13 12 16 16 C 1.55238 * 102.58338 * 156.67670 * 15 14 13 17 17 C 1.54266 * 104.23333 * 322.08174 * 16 15 14 18 18 C 1.53869 * 106.59800 * 23.61579 * 17 16 15 19 19 H 1.08990 * 109.47323 * 299.99991 * 1 2 3 20 20 H 1.08997 * 109.46860 * 60.00631 * 1 2 3 21 21 H 1.09004 * 109.46894 * 180.02562 * 1 2 3 22 22 H 1.08998 * 109.46832 * 180.02562 * 3 2 1 23 23 H 1.09006 * 109.46680 * 299.99924 * 3 2 1 24 24 H 1.08997 * 109.46956 * 59.99663 * 3 2 1 25 25 H 0.97002 * 119.99833 * 179.97438 * 7 6 4 26 26 H 1.09004 * 109.47341 * 179.97438 * 12 2 1 27 27 H 1.09004 * 109.46870 * 60.00359 * 12 2 1 28 28 H 1.09002 * 110.43369 * 305.69935 * 14 13 12 29 29 H 1.08996 * 110.75388 * 275.06024 * 15 14 13 30 30 H 1.08993 * 110.76071 * 38.44250 * 15 14 13 31 31 H 1.09005 * 110.46917 * 203.39204 * 16 15 14 32 32 H 1.09007 * 110.58541 * 80.83124 * 16 15 14 33 33 H 1.08999 * 110.03060 * 264.32313 * 17 16 15 34 34 H 1.09006 * 110.06829 * 142.91691 * 17 16 15 35 35 H 1.09001 * 110.02983 * 240.71432 * 18 17 16 36 36 H 1.08996 * 110.07773 * 119.30576 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6534 -1.5884 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9435 0.8301 -2.6034 8 14 2.3226 -1.1196 -4.0079 9 1 3.1476 -2.2864 -3.6037 10 1 1.1679 -1.5867 -4.8165 11 1 3.1473 -0.1858 -4.8161 12 6 2.0401 -0.7211 1.2492 13 16 1.4354 0.1339 2.7304 14 6 2.1319 -0.8524 4.0840 15 6 3.6724 -0.6971 4.1308 16 6 4.0038 -1.0551 5.6045 17 6 2.8428 -0.4415 6.4142 18 6 1.6527 -0.3127 5.4474 19 1 -0.3633 0.5138 0.8899 20 1 -0.3633 0.5137 -0.8900 21 1 -0.3633 -1.0277 0.0005 22 1 3.1300 1.4426 -0.0005 23 1 1.6766 1.9563 -0.8901 24 1 1.6766 1.9564 0.8899 25 1 0.7095 1.1616 -3.4844 26 1 3.1301 -0.7215 1.2490 27 1 1.6768 -1.7488 1.2492 28 1 1.8574 -1.9012 3.9710 29 1 4.1519 -1.3946 3.4441 30 1 3.9642 0.3290 3.9074 31 1 4.9532 -0.6089 5.9009 32 1 4.0331 -2.1364 5.7390 33 1 3.1276 0.5416 6.7890 34 1 2.5796 -1.0959 7.2453 35 1 1.3599 0.7330 5.3530 36 1 0.8116 -0.9045 5.8085 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594879585.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 11:59:36 Heat of formation + Delta-G solvation = -44.589891 kcal Electronic energy + Delta-G solvation = -14204.596270 eV Core-core repulsion = 12006.127710 eV Total energy + Delta-G solvation = -2198.468561 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 228.124 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -38.65083 -37.82977 -33.52094 -29.84925 -29.60717 -27.77623 -27.56731 -27.14140 -21.78095 -21.34195 -20.61044 -17.98778 -17.51240 -16.79652 -16.49013 -15.74606 -15.12431 -14.92772 -14.51964 -14.30509 -14.06607 -13.32747 -13.25274 -12.90587 -12.68498 -12.56097 -12.25538 -12.21788 -12.09638 -12.02904 -11.91848 -11.75518 -11.42927 -11.30410 -11.21039 -10.91613 -10.40666 -10.29532 -8.42579 -8.01140 -6.19310 0.95076 1.41272 1.44283 1.54052 1.89084 2.45749 3.21428 3.58854 3.69225 4.02628 4.31448 4.39702 4.43953 4.50617 4.55824 4.59204 4.75327 4.80699 4.89362 4.95053 5.07144 5.08256 5.19728 5.23762 5.24902 5.25954 5.31661 5.45502 5.47605 5.65507 5.65858 6.09643 6.20777 6.41347 6.86293 7.48477 8.98038 Molecular weight = 228.12amu Principal moments of inertia in cm(-1) A = 0.051636 B = 0.006201 C = 0.005856 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 542.128732 B = 4514.477096 C = 4780.557536 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.071 3.929 3 C -0.118 4.118 4 C -0.524 4.524 5 H 0.049 0.951 6 C 0.023 3.977 7 N -0.904 5.904 8 Si 0.951 3.049 9 H -0.270 1.270 10 H -0.282 1.282 11 H -0.281 1.281 12 C -0.043 4.043 13 S -0.290 6.290 14 C -0.064 4.064 15 C -0.119 4.119 16 C -0.116 4.116 17 C -0.115 4.115 18 C -0.099 4.099 19 H 0.031 0.969 20 H 0.057 0.943 21 H 0.019 0.981 22 H 0.020 0.980 23 H 0.057 0.943 24 H 0.031 0.969 25 H 0.259 0.741 26 H 0.062 0.938 27 H 0.058 0.942 28 H 0.083 0.917 29 H 0.060 0.940 30 H 0.068 0.932 31 H 0.078 0.922 32 H 0.074 0.926 33 H 0.071 0.929 34 H 0.082 0.918 35 H 0.062 0.938 36 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.908 -3.149 14.825 15.651 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.070 3.930 3 C -0.176 4.176 4 C -0.564 4.564 5 H 0.067 0.933 6 C -0.177 4.177 7 N -0.543 5.543 8 Si 0.777 3.223 9 H -0.195 1.195 10 H -0.208 1.208 11 H -0.207 1.207 12 C -0.191 4.191 13 S -0.060 6.060 14 C -0.193 4.193 15 C -0.159 4.159 16 C -0.155 4.155 17 C -0.153 4.153 18 C -0.137 4.137 19 H 0.050 0.950 20 H 0.076 0.924 21 H 0.039 0.961 22 H 0.039 0.961 23 H 0.076 0.924 24 H 0.050 0.950 25 H 0.069 0.931 26 H 0.081 0.919 27 H 0.077 0.923 28 H 0.101 0.899 29 H 0.079 0.921 30 H 0.086 0.914 31 H 0.097 0.903 32 H 0.092 0.908 33 H 0.090 0.910 34 H 0.101 0.899 35 H 0.081 0.919 36 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 3.152 -2.129 14.743 15.225 hybrid contribution 0.860 -1.419 -1.417 2.182 sum 4.012 -3.549 13.326 14.362 Atomic orbital electron populations 1.21679 0.97714 0.98456 0.99836 1.17976 0.92765 0.92549 0.89690 1.21667 0.97779 0.98324 0.99804 1.21376 1.31601 1.12114 0.91323 0.93262 1.25579 0.95150 0.95609 1.01317 1.69975 1.37239 1.23592 1.23507 0.85622 0.78095 0.78699 0.79880 1.19483 1.20779 1.20741 1.23435 1.01370 1.00056 0.94253 1.86763 1.71676 1.45425 1.02122 1.24155 0.98743 1.00634 0.95780 1.22899 0.92758 1.01837 0.98371 1.22407 0.98910 1.01269 0.92890 1.22117 0.93750 1.01844 0.97602 1.21962 0.99271 1.01192 0.91300 0.94982 0.92408 0.96145 0.96094 0.92440 0.95001 0.93103 0.91946 0.92292 0.89864 0.92101 0.91366 0.90282 0.90777 0.90993 0.89931 0.91930 0.90372 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.95 8.01 71.98 0.58 -5.38 16 2 C 0.07 3.56 0.52 -52.93 -0.03 3.53 16 3 C -0.12 -5.88 8.01 71.98 0.58 -5.31 16 4 C -0.52 -28.47 8.01 25.60 0.21 -28.27 16 5 H 0.05 2.65 7.74 -2.91 -0.02 2.63 16 6 C 0.02 1.24 5.15 84.65 0.44 1.68 16 7 N -0.90 -50.83 9.35 21.45 0.20 -50.63 16 8 Si 0.95 43.22 29.54 68.60 2.03 45.25 16 9 H -0.27 -12.00 7.11 99.48 0.71 -11.30 16 10 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 11 H -0.28 -12.60 7.11 99.48 0.71 -11.90 16 12 C -0.04 -1.84 4.79 71.98 0.35 -1.49 16 13 S -0.29 -10.75 18.05 -56.49 -1.02 -11.77 16 14 C -0.06 -1.79 3.36 31.67 0.11 -1.68 16 15 C -0.12 -2.99 6.28 32.01 0.20 -2.79 16 16 C -0.12 -2.10 6.84 31.79 0.22 -1.89 16 17 C -0.11 -1.97 6.80 31.32 0.21 -1.76 16 18 C -0.10 -2.22 6.39 31.32 0.20 -2.02 16 19 H 0.03 1.49 6.91 -2.39 -0.02 1.47 16 20 H 0.06 3.17 6.07 -2.39 -0.01 3.15 16 21 H 0.02 0.97 8.14 -2.39 -0.02 0.95 16 22 H 0.02 0.99 8.14 -2.39 -0.02 0.97 16 23 H 0.06 3.15 6.07 -2.38 -0.01 3.13 16 24 H 0.03 1.48 6.91 -2.39 -0.02 1.46 16 25 H 0.26 13.93 8.31 -92.71 -0.77 13.16 16 26 H 0.06 2.62 8.14 -2.39 -0.02 2.60 16 27 H 0.06 2.49 8.14 -2.39 -0.02 2.47 16 28 H 0.08 2.29 8.14 -2.39 -0.02 2.27 16 29 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 30 H 0.07 1.87 8.06 -2.39 -0.02 1.85 16 31 H 0.08 1.25 8.14 -2.38 -0.02 1.23 16 32 H 0.07 1.21 8.14 -2.38 -0.02 1.19 16 33 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 34 H 0.08 1.13 8.14 -2.38 -0.02 1.11 16 35 H 0.06 1.55 7.80 -2.39 -0.02 1.53 16 36 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 Total: -1.00 -57.45 289.87 5.27 -52.18 By element: Atomic # 1 Polarization: 9.33 SS G_CDS: 1.01 Total: 10.35 kcal Atomic # 6 Polarization: -48.41 SS G_CDS: 3.05 Total: -45.36 kcal Atomic # 7 Polarization: -50.83 SS G_CDS: 0.20 Total: -50.63 kcal Atomic # 14 Polarization: 43.22 SS G_CDS: 2.03 Total: 45.25 kcal Atomic # 16 Polarization: -10.75 SS G_CDS: -1.02 Total: -11.77 kcal Total: -57.45 5.27 -52.18 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594879585.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.585 kcal (2) G-P(sol) polarization free energy of solvation -57.447 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.861 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.271 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.175 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.590 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds