Wall clock time and date at job start Thu Apr 9 2020 12:00:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46899 * 109.47230 * 2 1 4 4 C 1.47008 * 111.00261 * 293.95533 * 3 2 1 5 5 C 1.53094 * 109.26075 * 177.60681 * 4 3 2 6 6 O 1.43018 * 109.25924 * 56.84793 * 5 4 3 7 7 C 1.43019 * 113.73936 * 301.33239 * 6 5 4 8 8 H 1.08998 * 109.50317 * 298.69180 * 7 6 5 9 9 C 1.50700 * 109.50768 * 178.60181 * 7 6 5 10 10 O 1.21293 * 119.99810 * 355.00017 * 9 7 6 11 11 N 1.34777 * 119.99675 * 175.27889 * 9 7 6 12 12 C 1.37102 * 119.99634 * 179.72687 * 11 9 7 13 13 H 1.08002 * 119.99868 * 359.97438 * 12 11 9 14 14 C 1.38945 * 119.99860 * 179.97438 * 12 11 9 15 15 N 1.31414 * 119.99894 * 0.02562 * 14 12 11 16 16 Si 1.86801 * 119.99956 * 179.97438 * 14 12 11 17 17 H 1.48496 * 109.47031 * 60.00269 * 16 14 12 18 18 H 1.48504 * 109.46971 * 180.02562 * 16 14 12 19 19 H 1.48498 * 109.47038 * 300.00246 * 16 14 12 20 20 C 1.47014 * 110.99802 * 170.31863 * 3 2 1 21 21 H 1.09000 * 109.46746 * 59.99678 * 1 2 3 22 22 H 1.08996 * 109.47504 * 179.97438 * 1 2 3 23 23 H 1.08994 * 109.47018 * 299.99988 * 1 2 3 24 24 H 1.09009 * 109.46651 * 240.00328 * 2 1 3 25 25 H 1.08994 * 109.47175 * 120.00337 * 2 1 3 26 26 H 1.08998 * 109.50874 * 57.67373 * 4 3 2 27 27 H 1.09004 * 109.50972 * 297.54206 * 4 3 2 28 28 H 1.09004 * 109.50644 * 296.91768 * 5 4 3 29 29 H 1.09000 * 109.51407 * 176.78219 * 5 4 3 30 30 H 0.97001 * 120.00485 * 359.71840 * 11 9 7 31 31 H 0.97004 * 119.99542 * 179.97438 * 15 14 12 32 32 H 1.09001 * 109.50539 * 62.46536 * 20 3 2 33 33 H 1.08994 * 109.51054 * 302.32936 * 20 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.6700 2.0675 -1.2542 5 6 2.1453 3.5212 -1.1876 6 8 3.5522 3.5463 -0.9317 7 6 3.9283 2.8908 0.2826 8 1 3.4556 3.3912 1.1277 9 6 5.4261 2.9437 0.4400 10 8 6.1129 3.4075 -0.4457 11 7 6.0028 2.4705 1.5625 12 6 7.3659 2.5135 1.7033 13 1 7.9775 2.9262 0.9145 14 6 7.9605 2.0262 2.8607 15 7 7.2163 1.5237 3.8202 16 14 9.8177 2.0842 3.0522 17 1 10.2793 3.4936 2.9780 18 1 10.1980 1.5069 4.3666 19 1 10.4523 1.2975 1.9643 20 6 3.4709 1.4306 0.2308 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3633 0.5138 0.8899 24 1 1.8933 -0.5138 -0.8901 25 1 1.8933 -0.5139 0.8899 26 1 0.5890 2.0440 -1.3922 27 1 2.1553 1.5638 -2.0903 28 1 1.6202 4.0395 -0.3852 29 1 1.9393 4.0155 -2.1370 30 1 5.4536 2.0997 2.2708 31 1 7.6315 1.1831 4.6280 32 1 3.9850 0.9169 -0.5815 33 1 3.7046 0.9423 1.1768 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000610257709.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:00:03 Heat of formation + Delta-G solvation = -101.296477 kcal Electronic energy + Delta-G solvation = -16300.501677 eV Core-core repulsion = 13553.280920 eV Total energy + Delta-G solvation = -2747.220757 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 228.126 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.16493 -39.49394 -37.15107 -36.00058 -33.60121 -32.37640 -31.78068 -28.39120 -26.58983 -25.31279 -23.44115 -21.54698 -21.12636 -20.05782 -18.15616 -17.46993 -17.04787 -16.60119 -16.39851 -16.17567 -15.68251 -15.46168 -15.03075 -14.80385 -14.49357 -13.79492 -13.52144 -13.06822 -12.93813 -12.81996 -12.66908 -12.50435 -12.44115 -12.12575 -11.77360 -11.68500 -11.57180 -10.72213 -10.34869 -10.09447 -9.49505 -8.51003 -6.01391 1.37735 1.41982 1.53102 1.87788 2.18987 2.51737 2.70481 3.14779 3.43025 3.75214 3.91895 3.94028 4.03471 4.24720 4.31617 4.33508 4.51582 4.52578 4.62205 4.67349 4.75100 4.90424 5.00541 5.09539 5.35746 5.37004 5.82044 5.86773 5.97546 6.14519 6.53119 7.05083 7.43442 7.98768 8.65829 Molecular weight = 228.13amu Principal moments of inertia in cm(-1) A = 0.038547 B = 0.006591 C = 0.005825 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 726.205400 B = 4247.140873 C = 4805.944239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.044 3.956 3 N -0.536 5.536 4 C 0.016 3.984 5 C 0.052 3.948 6 O -0.389 6.389 7 C 0.101 3.899 8 H 0.093 0.907 9 C 0.439 3.561 10 O -0.624 6.624 11 N -0.556 5.556 12 C -0.341 4.341 13 H 0.080 0.920 14 C -0.006 4.006 15 N -0.914 5.914 16 Si 0.997 3.003 17 H -0.271 1.271 18 H -0.267 1.267 19 H -0.271 1.271 20 C 0.043 3.957 21 H 0.062 0.938 22 H 0.074 0.926 23 H 0.062 0.938 24 H 0.032 0.968 25 H 0.076 0.924 26 H 0.120 0.880 27 H 0.033 0.967 28 H 0.070 0.930 29 H 0.122 0.878 30 H 0.399 0.601 31 H 0.281 0.719 32 H 0.027 0.973 33 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.173 -3.371 -3.903 15.082 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.083 4.083 3 N -0.262 5.262 4 C -0.112 4.112 5 C -0.024 4.024 6 O -0.308 6.308 7 C 0.039 3.961 8 H 0.110 0.890 9 C 0.226 3.774 10 O -0.511 6.511 11 N -0.193 5.193 12 C -0.470 4.470 13 H 0.098 0.902 14 C -0.207 4.207 15 N -0.554 5.554 16 Si 0.819 3.181 17 H -0.196 1.196 18 H -0.191 1.191 19 H -0.196 1.196 20 C -0.086 4.086 21 H 0.081 0.919 22 H 0.093 0.907 23 H 0.081 0.919 24 H 0.051 0.949 25 H 0.095 0.905 26 H 0.138 0.862 27 H 0.052 0.948 28 H 0.088 0.912 29 H 0.140 0.860 30 H 0.234 0.766 31 H 0.091 0.909 32 H 0.045 0.955 33 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -13.784 -2.826 -4.029 14.637 hybrid contribution 1.027 -0.677 -0.024 1.230 sum -12.757 -3.502 -4.054 13.836 Atomic orbital electron populations 1.21746 0.92508 1.02717 1.02721 1.22239 0.97808 0.87209 1.01093 1.62330 1.11109 1.17703 1.35038 1.22934 1.03213 0.95028 0.90027 1.23048 0.79911 0.96108 1.03326 1.88093 1.25416 1.76969 1.40307 1.21647 0.91400 0.93880 0.89166 0.88960 1.20313 0.89836 0.83732 0.83539 1.90493 1.65698 1.51741 1.43187 1.41776 1.07517 1.53691 1.16295 1.19668 0.82832 1.40718 1.03800 0.90239 1.26080 1.05119 0.95323 0.94193 1.69663 1.38063 1.39941 1.07728 0.84944 0.76335 0.78843 0.77938 1.19623 1.19102 1.19646 1.22490 0.89168 0.94934 1.02008 0.91906 0.90682 0.91894 0.94935 0.90549 0.86190 0.94840 0.91161 0.86030 0.76648 0.90937 0.95487 0.88874 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.20 9.84 71.98 0.71 -1.49 16 2 C 0.04 0.95 5.68 86.30 0.49 1.44 16 3 N -0.54 -14.36 4.73 -895.22 -4.23 -18.60 16 4 C 0.02 0.37 5.43 86.31 0.47 0.84 16 5 C 0.05 1.39 7.01 72.01 0.50 1.89 16 6 O -0.39 -15.53 10.01 -130.02 -1.30 -16.83 16 7 C 0.10 4.05 3.22 29.88 0.10 4.15 16 8 H 0.09 3.40 8.14 -2.39 -0.02 3.38 16 9 C 0.44 22.88 7.13 87.66 0.63 23.51 16 10 O -0.62 -38.27 16.09 15.89 0.26 -38.01 16 11 N -0.56 -29.53 5.25 -306.98 -1.61 -31.14 16 12 C -0.34 -19.72 9.68 84.04 0.81 -18.91 16 13 H 0.08 4.91 7.16 -2.91 -0.02 4.88 16 14 C -0.01 -0.34 5.50 84.92 0.47 0.13 16 15 N -0.91 -48.91 13.05 21.66 0.28 -48.63 16 16 Si 1.00 42.77 29.55 68.60 2.03 44.79 16 17 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 18 H -0.27 -10.65 7.11 99.48 0.71 -9.95 16 19 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 20 C 0.04 1.48 4.88 86.32 0.42 1.90 16 21 H 0.06 0.88 6.51 -2.39 -0.02 0.86 16 22 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 23 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 24 H 0.03 0.72 8.12 -2.38 -0.02 0.70 16 25 H 0.08 1.68 8.04 -2.39 -0.02 1.66 16 26 H 0.12 2.02 6.37 -2.39 -0.02 2.01 16 27 H 0.03 0.86 8.14 -2.38 -0.02 0.84 16 28 H 0.07 1.68 8.14 -2.38 -0.02 1.66 16 29 H 0.12 2.57 8.14 -2.39 -0.02 2.55 16 30 H 0.40 19.88 7.77 -92.71 -0.72 19.16 16 31 H 0.28 14.00 8.31 -92.71 -0.77 13.23 16 32 H 0.03 1.02 8.14 -2.39 -0.02 1.00 16 33 H 0.09 3.15 7.96 -2.39 -0.02 3.13 16 Total: -1.00 -69.92 275.60 0.40 -69.52 By element: Atomic # 1 Polarization: 25.05 SS G_CDS: 0.39 Total: 25.44 kcal Atomic # 6 Polarization: 8.87 SS G_CDS: 4.60 Total: 13.46 kcal Atomic # 7 Polarization: -92.81 SS G_CDS: -5.56 Total: -98.37 kcal Atomic # 8 Polarization: -53.80 SS G_CDS: -1.05 Total: -54.84 kcal Atomic # 14 Polarization: 42.77 SS G_CDS: 2.03 Total: 44.79 kcal Total: -69.92 0.40 -69.52 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610257709.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.775 kcal (2) G-P(sol) polarization free energy of solvation -69.922 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.697 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.400 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.521 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.296 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds