Wall clock time and date at job start Thu Apr 9 2020 12:00:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.37093 * 119.99963 * 2 1 4 4 H 1.07996 * 119.99702 * 173.18429 * 3 2 1 5 5 C 1.38946 * 120.00010 * 353.18291 * 3 2 1 6 6 N 1.31408 * 120.00440 * 5.21876 * 5 3 2 7 7 Si 1.86806 * 119.99715 * 185.21694 * 5 3 2 8 8 H 1.48499 * 109.46922 * 90.00068 * 7 5 3 9 9 H 1.48503 * 109.46968 * 209.99797 * 7 5 3 10 10 H 1.48492 * 109.47189 * 330.00142 * 7 5 3 11 11 C 1.34780 * 119.99681 * 180.02562 * 2 1 3 12 12 O 1.21281 * 119.99910 * 184.58546 * 11 2 1 13 13 C 1.50700 * 119.99818 * 4.58173 * 11 2 1 14 14 H 1.08995 * 109.54590 * 308.30581 * 13 11 2 15 15 C 1.53094 * 109.51013 * 68.41701 * 13 11 2 16 16 N 1.47098 * 109.28597 * 176.77830 * 15 13 11 17 17 C 1.46900 * 111.06004 * 177.62099 * 16 15 13 18 18 C 1.47006 * 110.70564 * 301.41338 * 16 15 13 19 19 C 1.53102 * 109.29220 * 58.59222 * 18 16 15 20 20 O 1.43015 * 109.25782 * 303.12745 * 19 18 16 21 21 H 1.09000 * 109.47415 * 183.84589 * 1 2 3 22 22 H 1.09000 * 109.47203 * 303.84870 * 1 2 3 23 23 H 1.09001 * 109.47362 * 63.84952 * 1 2 3 24 24 H 0.96996 * 120.00335 * 180.02562 * 6 5 3 25 25 H 1.09007 * 109.50563 * 296.71957 * 15 13 11 26 26 H 1.09004 * 109.50662 * 56.84228 * 15 13 11 27 27 H 1.09001 * 109.46716 * 179.66398 * 17 16 15 28 28 H 1.08989 * 109.47716 * 299.66474 * 17 16 15 29 29 H 1.09003 * 109.46804 * 59.67086 * 17 16 15 30 30 H 1.08997 * 109.50814 * 298.63829 * 18 16 15 31 31 H 1.09002 * 109.50983 * 178.54584 * 18 16 15 32 32 H 1.08994 * 109.50669 * 63.06355 * 19 18 16 33 33 H 1.09002 * 109.50357 * 183.15415 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1505 1.1873 0.0000 4 1 3.2247 1.1905 0.1110 5 6 1.4631 2.3863 -0.1428 6 7 0.1494 2.3909 -0.1749 7 14 2.4066 3.9920 -0.2893 8 1 2.6900 4.2708 -1.7201 9 1 1.5936 5.0973 0.2788 10 1 3.6859 3.8842 0.4569 11 6 2.1389 -1.1673 -0.0005 12 8 3.3488 -1.1690 0.0834 13 6 1.3889 -2.4702 -0.1054 14 1 0.6011 -2.4991 0.6474 15 6 0.7683 -2.5921 -1.4996 16 7 0.1032 -3.8984 -1.6227 17 6 -0.5553 -4.0344 -2.9288 18 6 1.0599 -4.9919 -1.3985 19 6 1.6775 -4.8459 -0.0052 20 8 2.2916 -3.5591 0.1060 21 1 -0.3634 -1.0253 0.0689 22 1 -0.3633 0.5724 0.8535 23 1 -0.3634 0.4529 -0.9225 24 1 -0.3304 3.2279 -0.2749 25 1 0.0371 -1.7966 -1.6434 26 1 1.5502 -2.5094 -2.2545 27 1 -1.0336 -5.0117 -2.9945 28 1 -1.3076 -3.2536 -3.0395 29 1 0.1868 -3.9391 -3.7215 30 1 1.8464 -4.9476 -2.1518 31 1 0.5422 -5.9486 -1.4687 32 1 0.8982 -4.9438 0.7504 33 1 2.4282 -5.6222 0.1432 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000610257733.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:00:05 Heat of formation + Delta-G solvation = -47.728197 kcal Electronic energy + Delta-G solvation = -16770.961634 eV Core-core repulsion = 14026.063772 eV Total energy + Delta-G solvation = -2744.897862 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 228.126 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.70573 -37.79871 -35.49532 -34.55801 -31.94988 -30.73115 -28.60148 -26.36139 -25.14739 -23.90883 -23.54818 -20.46421 -19.10716 -16.98993 -16.52300 -15.84777 -15.61500 -15.18069 -14.71554 -14.66523 -13.87094 -13.84279 -13.43749 -13.31152 -12.45297 -12.24607 -12.10112 -11.77119 -11.48462 -11.20500 -11.08739 -10.96922 -10.74742 -10.43663 -10.35499 -10.16472 -9.30688 -9.03231 -8.34761 -8.27450 -7.86691 -6.24529 -3.81392 3.16033 3.24850 3.30592 3.70429 3.83425 4.04705 4.24198 4.95666 5.01990 5.12393 5.16759 5.28145 5.38135 5.45036 5.55071 5.63639 5.73393 5.82357 5.86486 5.89327 6.06094 6.17482 6.38540 6.97994 7.01067 7.07826 7.39042 7.45951 7.56595 8.07747 8.49411 9.18966 9.42046 9.96777 10.69789 Molecular weight = 228.13amu Principal moments of inertia in cm(-1) A = 0.042386 B = 0.007614 C = 0.006894 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 660.432793 B = 3676.582372 C = 4060.652769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.110 3.890 2 N -0.445 5.445 3 C -0.299 4.299 4 H 0.105 0.895 5 C 0.026 3.974 6 N -0.889 5.889 7 Si 0.933 3.067 8 H -0.278 1.278 9 H -0.283 1.283 10 H -0.269 1.269 11 C 0.446 3.554 12 O -0.575 6.575 13 C 0.090 3.910 14 H 0.077 0.923 15 C 0.029 3.971 16 N -0.542 5.542 17 C 0.026 3.974 18 C 0.016 3.984 19 C 0.061 3.939 20 O -0.356 6.356 21 H 0.026 0.974 22 H 0.072 0.928 23 H 0.070 0.930 24 H 0.266 0.734 25 H 0.098 0.902 26 H 0.046 0.954 27 H 0.067 0.933 28 H 0.071 0.929 29 H 0.025 0.975 30 H 0.042 0.958 31 H 0.082 0.918 32 H 0.056 0.944 33 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.661 -10.357 -3.214 11.803 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.033 4.033 2 N -0.165 5.165 3 C -0.426 4.426 4 H 0.123 0.877 5 C -0.175 4.175 6 N -0.531 5.531 7 Si 0.759 3.241 8 H -0.204 1.204 9 H -0.209 1.209 10 H -0.194 1.194 11 C 0.232 3.768 12 O -0.459 6.459 13 C 0.028 3.972 14 H 0.095 0.905 15 C -0.100 4.100 16 N -0.267 5.267 17 C -0.123 4.123 18 C -0.113 4.113 19 C -0.017 4.017 20 O -0.273 6.273 21 H 0.044 0.956 22 H 0.091 0.909 23 H 0.088 0.912 24 H 0.076 0.924 25 H 0.116 0.884 26 H 0.064 0.936 27 H 0.086 0.914 28 H 0.090 0.910 29 H 0.044 0.956 30 H 0.060 0.940 31 H 0.101 0.899 32 H 0.075 0.925 33 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -4.383 -10.180 -2.777 11.426 hybrid contribution 0.413 0.792 -0.857 1.238 sum -3.970 -9.388 -3.634 10.821 Atomic orbital electron populations 1.21926 0.80187 0.96512 1.04678 1.43633 1.06041 1.04386 1.62459 1.19826 0.93733 0.82009 1.47050 0.87717 1.25315 0.95822 0.99660 0.96705 1.70158 1.05855 1.27241 1.49797 0.85816 0.79248 0.80423 0.78581 1.20358 1.20877 1.19380 1.19322 0.87880 0.83779 0.85813 1.90526 1.13865 1.86443 1.55038 1.21889 0.91521 0.87856 0.95921 0.90517 1.22833 0.98310 0.91519 0.97300 1.62270 1.30504 1.02489 1.31444 1.22365 0.98595 1.02487 0.88809 1.22823 0.94794 0.95150 0.98502 1.22661 0.97613 0.86373 0.95049 1.88136 1.34698 1.12781 1.91710 0.95597 0.90928 0.91176 0.92354 0.88432 0.93571 0.91424 0.90976 0.95592 0.93985 0.89937 0.92532 0.88514 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 2.51 7.59 59.85 0.45 2.96 16 2 N -0.45 -11.69 3.03 -122.20 -0.37 -12.06 16 3 C -0.30 -8.45 9.56 -14.94 -0.14 -8.59 16 4 H 0.11 3.12 7.18 -52.49 -0.38 2.74 16 5 C 0.03 0.70 5.46 -17.47 -0.10 0.60 16 6 N -0.89 -23.22 9.45 55.50 0.52 -22.70 16 7 Si 0.93 20.91 29.56 -169.99 -5.02 15.89 16 8 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 9 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 10 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 11 C 0.45 11.56 6.99 -10.98 -0.08 11.48 16 12 O -0.58 -17.18 16.11 -14.19 -0.23 -17.41 16 13 C 0.09 1.86 2.36 -27.83 -0.07 1.80 16 14 H 0.08 1.50 7.04 -51.93 -0.37 1.14 16 15 C 0.03 0.52 4.60 -3.67 -0.02 0.50 16 16 N -0.54 -8.03 4.99 -242.53 -1.21 -9.24 16 17 C 0.03 0.31 9.61 60.06 0.58 0.88 16 18 C 0.02 0.21 5.66 -3.71 -0.02 0.19 16 19 C 0.06 0.89 7.01 37.21 0.26 1.15 16 20 O -0.36 -7.31 10.02 -54.98 -0.55 -7.87 16 21 H 0.03 0.50 4.75 -51.93 -0.25 0.25 16 22 H 0.07 1.75 7.07 -51.93 -0.37 1.38 16 23 H 0.07 1.65 7.03 -51.93 -0.36 1.29 16 24 H 0.27 6.58 8.31 -40.82 -0.34 6.24 16 25 H 0.10 1.74 6.10 -51.92 -0.32 1.43 16 26 H 0.05 0.90 8.14 -51.93 -0.42 0.47 16 27 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.07 0.82 8.14 -51.94 -0.42 0.40 16 29 H 0.03 0.31 8.14 -51.93 -0.42 -0.12 16 30 H 0.04 0.59 8.14 -51.93 -0.42 0.16 16 31 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 32 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 33 H 0.10 1.16 8.14 -51.93 -0.42 0.74 16 LS Contribution 265.92 15.07 4.01 4.01 Total: -1.00 -31.94 265.92 -6.53 -38.48 By element: Atomic # 1 Polarization: 4.49 SS G_CDS: -4.55 Total: -0.07 kcal Atomic # 6 Polarization: 10.09 SS G_CDS: 0.87 Total: 10.97 kcal Atomic # 7 Polarization: -42.94 SS G_CDS: -1.05 Total: -44.00 kcal Atomic # 8 Polarization: -24.50 SS G_CDS: -0.78 Total: -25.28 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.89 kcal Total LS contribution 4.01 Total: 4.01 kcal Total: -31.94 -6.53 -38.48 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610257733.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.253 kcal (2) G-P(sol) polarization free energy of solvation -31.944 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.197 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.531 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.476 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.728 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds