Wall clock time and date at job start Thu Apr 9 2020 12:00:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.37093 * 119.99963 * 2 1 4 4 H 1.07996 * 119.99702 * 173.18429 * 3 2 1 5 5 C 1.38946 * 120.00010 * 353.18291 * 3 2 1 6 6 N 1.31408 * 120.00440 * 5.21876 * 5 3 2 7 7 Si 1.86806 * 119.99715 * 185.21694 * 5 3 2 8 8 H 1.48499 * 109.46922 * 90.00068 * 7 5 3 9 9 H 1.48503 * 109.46968 * 209.99797 * 7 5 3 10 10 H 1.48492 * 109.47189 * 330.00142 * 7 5 3 11 11 C 1.34780 * 119.99681 * 180.02562 * 2 1 3 12 12 O 1.21281 * 119.99910 * 184.58546 * 11 2 1 13 13 C 1.50700 * 119.99818 * 4.58173 * 11 2 1 14 14 H 1.08995 * 109.54590 * 308.30581 * 13 11 2 15 15 C 1.53094 * 109.51013 * 68.41701 * 13 11 2 16 16 N 1.47098 * 109.28597 * 176.77830 * 15 13 11 17 17 C 1.46900 * 111.06004 * 177.62099 * 16 15 13 18 18 C 1.47006 * 110.70564 * 301.41338 * 16 15 13 19 19 C 1.53102 * 109.29220 * 58.59222 * 18 16 15 20 20 O 1.43015 * 109.25782 * 303.12745 * 19 18 16 21 21 H 1.09000 * 109.47415 * 183.84589 * 1 2 3 22 22 H 1.09000 * 109.47203 * 303.84870 * 1 2 3 23 23 H 1.09001 * 109.47362 * 63.84952 * 1 2 3 24 24 H 0.96996 * 120.00335 * 180.02562 * 6 5 3 25 25 H 1.09007 * 109.50563 * 296.71957 * 15 13 11 26 26 H 1.09004 * 109.50662 * 56.84228 * 15 13 11 27 27 H 1.09001 * 109.46716 * 179.66398 * 17 16 15 28 28 H 1.08989 * 109.47716 * 299.66474 * 17 16 15 29 29 H 1.09003 * 109.46804 * 59.67086 * 17 16 15 30 30 H 1.08997 * 109.50814 * 298.63829 * 18 16 15 31 31 H 1.09002 * 109.50983 * 178.54584 * 18 16 15 32 32 H 1.08994 * 109.50669 * 63.06355 * 19 18 16 33 33 H 1.09002 * 109.50357 * 183.15415 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1505 1.1873 0.0000 4 1 3.2247 1.1905 0.1110 5 6 1.4631 2.3863 -0.1428 6 7 0.1494 2.3909 -0.1749 7 14 2.4066 3.9920 -0.2893 8 1 2.6900 4.2708 -1.7201 9 1 1.5936 5.0973 0.2788 10 1 3.6859 3.8842 0.4569 11 6 2.1389 -1.1673 -0.0005 12 8 3.3488 -1.1690 0.0834 13 6 1.3889 -2.4702 -0.1054 14 1 0.6011 -2.4991 0.6474 15 6 0.7683 -2.5921 -1.4996 16 7 0.1032 -3.8984 -1.6227 17 6 -0.5553 -4.0344 -2.9288 18 6 1.0599 -4.9919 -1.3985 19 6 1.6775 -4.8459 -0.0052 20 8 2.2916 -3.5591 0.1060 21 1 -0.3634 -1.0253 0.0689 22 1 -0.3633 0.5724 0.8535 23 1 -0.3634 0.4529 -0.9225 24 1 -0.3304 3.2279 -0.2749 25 1 0.0371 -1.7966 -1.6434 26 1 1.5502 -2.5094 -2.2545 27 1 -1.0336 -5.0117 -2.9945 28 1 -1.3076 -3.2536 -3.0395 29 1 0.1868 -3.9391 -3.7215 30 1 1.8464 -4.9476 -2.1518 31 1 0.5422 -5.9486 -1.4687 32 1 0.8982 -4.9438 0.7504 33 1 2.4282 -5.6222 0.1432 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000610257733.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:00:05 Heat of formation + Delta-G solvation = -71.423705 kcal Electronic energy + Delta-G solvation = -16771.989149 eV Core-core repulsion = 14026.063772 eV Total energy + Delta-G solvation = -2745.925376 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 228.126 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.28321 -39.54645 -37.00375 -36.42886 -33.89286 -32.27613 -29.83690 -28.25440 -26.89157 -25.24762 -25.06171 -21.78887 -20.90193 -19.03400 -18.30598 -17.30829 -17.08591 -16.62704 -16.42981 -15.97914 -15.71007 -15.39128 -15.11614 -14.72040 -14.08657 -13.72607 -13.61861 -13.29132 -12.95308 -12.77051 -12.68909 -12.60749 -12.37648 -12.21242 -12.12272 -11.70838 -11.05408 -10.70846 -10.32597 -9.93905 -9.50896 -8.28314 -5.95539 1.35005 1.40384 1.52844 1.86402 2.14842 2.51072 2.76348 3.07496 3.35027 3.74863 3.86829 3.91559 3.99225 4.18783 4.33924 4.49063 4.53473 4.60289 4.64326 4.71331 4.80974 4.92587 4.99551 5.16834 5.41354 5.46588 5.76900 5.90409 5.94605 6.16618 6.45954 7.11603 7.38871 7.93871 8.63202 Molecular weight = 228.13amu Principal moments of inertia in cm(-1) A = 0.042386 B = 0.007614 C = 0.006894 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 660.432793 B = 3676.582372 C = 4060.652769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.123 3.877 2 N -0.453 5.453 3 C -0.346 4.346 4 H 0.075 0.925 5 C 0.000 4.000 6 N -0.892 5.892 7 Si 0.995 3.005 8 H -0.270 1.270 9 H -0.265 1.265 10 H -0.276 1.276 11 C 0.430 3.570 12 O -0.629 6.629 13 C 0.102 3.898 14 H 0.091 0.909 15 C 0.041 3.959 16 N -0.542 5.542 17 C 0.023 3.977 18 C 0.016 3.984 19 C 0.051 3.949 20 O -0.392 6.392 21 H 0.061 0.939 22 H 0.057 0.943 23 H 0.061 0.939 24 H 0.275 0.725 25 H 0.097 0.903 26 H 0.023 0.977 27 H 0.097 0.903 28 H 0.075 0.925 29 H 0.023 0.977 30 H 0.033 0.967 31 H 0.122 0.878 32 H 0.071 0.929 33 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.351 -11.174 -3.742 13.387 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.019 4.019 2 N -0.172 5.172 3 C -0.474 4.474 4 H 0.093 0.907 5 C -0.201 4.201 6 N -0.532 5.532 7 Si 0.818 3.182 8 H -0.195 1.195 9 H -0.190 1.190 10 H -0.201 1.201 11 C 0.218 3.782 12 O -0.516 6.516 13 C 0.041 3.959 14 H 0.109 0.891 15 C -0.088 4.088 16 N -0.267 5.267 17 C -0.124 4.124 18 C -0.111 4.111 19 C -0.025 4.025 20 O -0.311 6.311 21 H 0.079 0.921 22 H 0.076 0.924 23 H 0.080 0.920 24 H 0.085 0.915 25 H 0.115 0.885 26 H 0.041 0.959 27 H 0.115 0.885 28 H 0.094 0.906 29 H 0.042 0.958 30 H 0.051 0.949 31 H 0.140 0.860 32 H 0.089 0.911 33 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -6.138 -11.016 -3.314 13.039 hybrid contribution 0.902 0.997 -0.685 1.509 sum -5.236 -10.019 -3.999 11.991 Atomic orbital electron populations 1.21824 0.78243 0.98418 1.03427 1.43869 1.07298 1.04232 1.61815 1.19767 0.93073 0.83922 1.50599 0.90677 1.26064 0.96863 1.02012 0.95193 1.70234 1.06439 1.28551 1.47934 0.84912 0.77865 0.76651 0.78756 1.19548 1.18961 1.20122 1.20314 0.87737 0.85482 0.84667 1.90467 1.16317 1.87538 1.57322 1.21623 0.90807 0.85568 0.97917 0.89106 1.22588 0.97588 0.93847 0.94798 1.62314 1.30119 1.01031 1.33271 1.22489 0.98427 1.04368 0.87121 1.22921 0.94754 0.96238 0.97233 1.23062 0.98889 0.84140 0.96442 1.88087 1.36157 1.14712 1.92120 0.92069 0.92398 0.92003 0.91500 0.88487 0.95876 0.88479 0.90594 0.95819 0.94855 0.85972 0.91101 0.85996 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 5.60 7.59 127.77 0.97 6.57 16 2 N -0.45 -24.47 3.03 -658.90 -1.99 -26.46 16 3 C -0.35 -20.28 9.56 84.04 0.80 -19.48 16 4 H 0.08 4.74 7.18 -2.91 -0.02 4.72 16 5 C 0.00 0.01 5.46 84.93 0.46 0.47 16 6 N -0.89 -46.02 9.45 21.66 0.20 -45.82 16 7 Si 1.00 42.73 29.56 68.60 2.03 44.76 16 8 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 9 H -0.27 -10.59 7.11 99.48 0.71 -9.88 16 10 H -0.28 -12.13 7.11 99.48 0.71 -11.42 16 11 C 0.43 23.05 6.99 87.66 0.61 23.66 16 12 O -0.63 -39.54 16.11 15.84 0.26 -39.28 16 13 C 0.10 4.24 2.36 29.88 0.07 4.31 16 14 H 0.09 3.45 7.04 -2.39 -0.02 3.43 16 15 C 0.04 1.44 4.60 86.30 0.40 1.84 16 16 N -0.54 -14.62 4.99 -921.22 -4.59 -19.21 16 17 C 0.02 0.48 9.61 127.69 1.23 1.71 16 18 C 0.02 0.39 5.66 86.32 0.49 0.87 16 19 C 0.05 1.37 7.01 72.02 0.50 1.87 16 20 O -0.39 -16.04 10.02 -130.10 -1.30 -17.35 16 21 H 0.06 2.31 4.75 -2.39 -0.01 2.30 16 22 H 0.06 2.78 7.07 -2.39 -0.02 2.77 16 23 H 0.06 2.89 7.03 -2.39 -0.02 2.88 16 24 H 0.27 13.17 8.31 -92.71 -0.77 12.40 16 25 H 0.10 3.38 6.10 -2.38 -0.01 3.36 16 26 H 0.02 0.91 8.14 -2.38 -0.02 0.89 16 27 H 0.10 1.47 8.14 -2.39 -0.02 1.45 16 28 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 29 H 0.02 0.50 8.14 -2.39 -0.02 0.48 16 30 H 0.03 0.86 8.14 -2.39 -0.02 0.84 16 31 H 0.12 1.97 8.14 -2.39 -0.02 1.95 16 32 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 33 H 0.12 2.61 8.14 -2.39 -0.02 2.59 16 Total: -1.00 -71.38 265.92 1.23 -70.15 By element: Atomic # 1 Polarization: 10.29 SS G_CDS: 1.10 Total: 11.38 kcal Atomic # 6 Polarization: 16.29 SS G_CDS: 5.54 Total: 21.82 kcal Atomic # 7 Polarization: -85.11 SS G_CDS: -6.38 Total: -91.49 kcal Atomic # 8 Polarization: -55.58 SS G_CDS: -1.05 Total: -56.63 kcal Atomic # 14 Polarization: 42.73 SS G_CDS: 2.03 Total: 44.76 kcal Total: -71.38 1.23 -70.15 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610257733.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.274 kcal (2) G-P(sol) polarization free energy of solvation -71.382 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.656 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.232 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.150 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds