Wall clock time and date at job start Thu Apr 9 2020 12:00:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.36940 * 120.00186 * 2 1 4 4 H 1.07999 * 120.00105 * 202.33968 * 3 2 1 5 5 C 1.38807 * 119.99740 * 22.34639 * 3 2 1 6 6 N 1.31613 * 120.00244 * 11.34159 * 5 3 2 7 7 Si 1.86803 * 119.99864 * 191.34692 * 5 3 2 8 8 H 1.48498 * 109.46997 * 59.99466 * 7 5 3 9 9 H 1.48491 * 109.47349 * 179.97438 * 7 5 3 10 10 H 1.48493 * 109.47130 * 299.99998 * 7 5 3 11 11 C 1.46501 * 119.99971 * 179.97438 * 2 1 3 12 12 C 1.52999 * 109.47355 * 270.00142 * 11 2 1 13 13 C 1.53003 * 109.47177 * 179.97438 * 12 11 2 14 14 N 1.46902 * 109.46766 * 180.02562 * 13 12 11 15 15 C 1.47007 * 111.00197 * 293.63327 * 14 13 12 16 16 C 1.53096 * 109.25912 * 177.60864 * 15 14 13 17 17 O 1.43019 * 109.25871 * 56.85271 * 16 15 14 18 18 C 1.43021 * 113.73553 * 301.32914 * 17 16 15 19 19 C 1.47014 * 110.99581 * 170.00312 * 14 13 12 20 20 H 1.08996 * 109.47508 * 274.21250 * 1 2 3 21 21 H 1.08998 * 109.46865 * 34.21271 * 1 2 3 22 22 H 1.09007 * 109.47074 * 154.20917 * 1 2 3 23 23 H 0.97008 * 120.00305 * 180.02562 * 6 5 3 24 24 H 1.09001 * 109.47062 * 150.00314 * 11 2 1 25 25 H 1.09001 * 109.47282 * 30.00581 * 11 2 1 26 26 H 1.09001 * 109.46895 * 60.00069 * 12 11 2 27 27 H 1.09001 * 109.47283 * 300.00438 * 12 11 2 28 28 H 1.09001 * 109.47026 * 60.00303 * 13 12 11 29 29 H 1.08995 * 109.46985 * 300.00005 * 13 12 11 30 30 H 1.08997 * 109.50981 * 297.54420 * 15 14 13 31 31 H 1.09000 * 109.50524 * 57.67813 * 15 14 13 32 32 H 1.09003 * 109.51071 * 296.91367 * 16 15 14 33 33 H 1.09003 * 109.54501 * 176.80736 * 16 15 14 34 34 H 1.09000 * 109.50565 * 298.73273 * 18 17 16 35 35 H 1.08993 * 109.53975 * 178.62513 * 18 17 16 36 36 H 1.09010 * 109.50853 * 302.32494 * 19 14 13 37 37 H 1.08997 * 109.51285 * 62.41164 * 19 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1689 1.2210 -0.3555 5 6 1.5338 2.3429 0.4571 6 7 0.3842 2.2690 1.0935 7 14 2.3367 4.0047 0.1687 8 1 2.4916 4.2331 -1.2904 9 1 1.4846 5.0735 0.7488 10 1 3.6720 4.0287 0.8179 11 6 2.1975 -1.2687 0.0006 12 6 2.4525 -1.7098 1.4432 13 6 3.2169 -3.0352 1.4438 14 7 3.4612 -3.4589 2.8290 15 6 4.3787 -2.5334 3.5091 16 6 4.5580 -2.9776 4.9632 17 8 5.0323 -4.3266 4.9892 18 6 4.1625 -5.2553 4.3361 19 6 3.9792 -4.8340 2.8756 20 1 -0.3634 0.0755 1.0248 21 1 -0.3633 0.8498 -0.5778 22 1 -0.3633 -0.9254 -0.4472 23 1 -0.0464 3.0776 1.4126 24 1 3.1499 -1.1386 -0.5133 25 1 1.6084 -2.0286 -0.5130 26 1 1.5000 -1.8400 1.9571 27 1 3.0415 -0.9500 1.9568 28 1 4.1693 -2.9055 0.9298 29 1 2.6274 -3.7948 0.9304 30 1 5.3446 -2.5417 3.0042 31 1 3.9633 -1.5259 3.4850 32 1 3.6016 -2.9179 5.4827 33 1 5.2812 -2.3280 5.4564 34 1 3.1946 -5.2618 4.8373 35 1 4.5993 -6.2531 4.3750 36 1 3.2722 -5.5061 2.3890 37 1 4.9383 -4.8794 2.3599 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000610370185.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:00:09 Heat of formation + Delta-G solvation = -20.221400 kcal Electronic energy + Delta-G solvation = -16342.888036 eV Core-core repulsion = 13735.016052 eV Total energy + Delta-G solvation = -2607.871983 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 228.158 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.49594 -36.47628 -35.25956 -32.14329 -31.16694 -30.12832 -27.18723 -25.80095 -24.28845 -23.95717 -21.51618 -20.30482 -19.99431 -16.74677 -16.41347 -16.11753 -15.21497 -15.03041 -14.78162 -14.64719 -13.94129 -13.78619 -13.31636 -12.92477 -12.40538 -12.24983 -11.69929 -11.44315 -11.39897 -11.08797 -10.81447 -10.73602 -10.65958 -10.51887 -10.29026 -10.04132 -9.84420 -9.68741 -9.56508 -8.50110 -8.25554 -6.69956 -5.67531 -3.12930 3.40596 3.45961 3.46910 3.77314 3.95393 4.53989 4.87270 5.02611 5.05707 5.13288 5.28169 5.44699 5.50529 5.54314 5.57730 5.63574 5.75951 5.83594 5.93408 5.97932 6.10820 6.22449 6.43091 6.54173 6.81238 6.90596 7.05311 7.10040 7.17526 7.27146 7.44521 7.78718 7.85242 8.45621 9.29459 9.93315 10.42590 11.37677 Molecular weight = 228.16amu Principal moments of inertia in cm(-1) A = 0.036309 B = 0.005621 C = 0.005197 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 770.974936 B = 4980.098100 C = 5386.867749 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.165 3.835 2 N -0.604 5.604 3 C -0.252 4.252 4 H 0.066 0.934 5 C 0.000 4.000 6 N -0.910 5.910 7 Si 0.904 3.096 8 H -0.285 1.285 9 H -0.290 1.290 10 H -0.284 1.284 11 C 0.154 3.846 12 C -0.132 4.132 13 C 0.058 3.942 14 N -0.536 5.536 15 C 0.015 3.985 16 C 0.064 3.936 17 O -0.390 6.390 18 C 0.064 3.936 19 C 0.016 3.984 20 H 0.027 0.973 21 H 0.043 0.957 22 H -0.005 1.005 23 H 0.252 0.748 24 H 0.039 0.961 25 H 0.035 0.965 26 H 0.061 0.939 27 H 0.061 0.939 28 H 0.029 0.971 29 H 0.069 0.931 30 H 0.039 0.961 31 H 0.096 0.904 32 H 0.060 0.940 33 H 0.096 0.904 34 H 0.058 0.942 35 H 0.093 0.907 36 H 0.083 0.917 37 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.159 -12.842 4.266 14.868 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.326 5.326 3 C -0.382 4.382 4 H 0.084 0.916 5 C -0.197 4.197 6 N -0.555 5.555 7 Si 0.734 3.266 8 H -0.211 1.211 9 H -0.216 1.216 10 H -0.210 1.210 11 C 0.026 3.974 12 C -0.173 4.173 13 C -0.070 4.070 14 N -0.262 5.262 15 C -0.113 4.113 16 C -0.013 4.013 17 O -0.309 6.309 18 C -0.013 4.013 19 C -0.112 4.112 20 H 0.046 0.954 21 H 0.062 0.938 22 H 0.014 0.986 23 H 0.062 0.938 24 H 0.057 0.943 25 H 0.053 0.947 26 H 0.080 0.920 27 H 0.080 0.920 28 H 0.048 0.952 29 H 0.087 0.913 30 H 0.057 0.943 31 H 0.114 0.886 32 H 0.078 0.922 33 H 0.114 0.886 34 H 0.076 0.924 35 H 0.112 0.888 36 H 0.101 0.899 37 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 5.751 -12.733 4.650 14.725 hybrid contribution 0.881 1.054 -0.610 1.503 sum 6.633 -11.680 4.040 14.026 Atomic orbital electron populations 1.20778 0.82563 0.95416 0.99204 1.43960 1.01934 1.00707 1.86024 1.19164 0.97869 0.85533 1.35655 0.91589 1.25016 0.97738 0.98440 0.98552 1.70059 1.17871 1.27058 1.40509 0.86346 0.78482 0.83914 0.77860 1.21129 1.21628 1.21028 1.20764 0.95459 0.88117 0.93017 1.22296 0.99956 0.93718 1.01352 1.22222 0.98893 0.98880 0.86966 1.62268 1.45115 1.01271 1.17523 1.22827 0.95081 0.98374 0.95000 1.22695 1.00106 0.82888 0.95632 1.87945 1.47914 1.17615 1.77430 1.22638 0.94647 0.92612 0.91385 1.22772 0.99091 0.91618 0.97728 0.95448 0.93810 0.98617 0.93768 0.94251 0.94668 0.92009 0.92007 0.95244 0.91265 0.94260 0.88615 0.92213 0.88572 0.92353 0.88841 0.89872 0.94350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.17 4.20 9.01 59.84 0.54 4.73 16 2 N -0.60 -15.59 2.93 -181.12 -0.53 -16.12 16 3 C -0.25 -7.06 9.67 -15.06 -0.15 -7.21 16 4 H 0.07 1.80 7.84 -52.49 -0.41 1.39 16 5 C 0.00 0.01 5.13 -17.43 -0.09 -0.08 16 6 N -0.91 -26.93 10.58 55.49 0.59 -26.35 16 7 Si 0.90 22.10 29.57 -169.99 -5.03 17.07 16 8 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 9 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 10 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 11 C 0.15 3.22 5.71 -4.04 -0.02 3.20 16 12 C -0.13 -2.53 5.47 -26.73 -0.15 -2.67 16 13 C 0.06 0.89 4.96 -3.82 -0.02 0.87 16 14 N -0.54 -7.81 4.73 -234.31 -1.11 -8.92 16 15 C 0.02 0.22 5.44 -3.72 -0.02 0.20 16 16 C 0.06 0.80 7.01 37.21 0.26 1.06 16 17 O -0.39 -5.19 10.83 -35.23 -0.38 -5.57 16 18 C 0.06 0.71 7.01 37.21 0.26 0.98 16 19 C 0.02 0.20 5.64 -3.71 -0.02 0.18 16 20 H 0.03 0.75 7.42 -51.93 -0.39 0.36 16 21 H 0.04 1.19 7.19 -51.93 -0.37 0.81 16 22 H 0.00 -0.10 7.85 -51.92 -0.41 -0.51 16 23 H 0.25 7.25 8.31 -40.82 -0.34 6.91 16 24 H 0.04 0.80 8.03 -51.93 -0.42 0.39 16 25 H 0.03 0.67 7.86 -51.93 -0.41 0.26 16 26 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 27 H 0.06 1.30 6.52 -51.93 -0.34 0.96 16 28 H 0.03 0.44 8.12 -51.93 -0.42 0.02 16 29 H 0.07 0.98 8.04 -51.93 -0.42 0.56 16 30 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.10 1.48 6.38 -51.93 -0.33 1.15 16 32 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.10 1.04 8.14 -51.93 -0.42 0.61 16 34 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.09 0.82 8.14 -51.93 -0.42 0.39 16 36 H 0.08 0.88 8.09 -51.92 -0.42 0.46 16 37 H 0.04 0.47 8.14 -51.93 -0.42 0.04 16 LS Contribution 293.64 15.07 4.43 4.43 Total: -1.00 -30.61 293.64 -7.86 -38.48 By element: Atomic # 1 Polarization: 2.14 SS G_CDS: -6.43 Total: -4.29 kcal Atomic # 6 Polarization: 0.67 SS G_CDS: 0.60 Total: 1.26 kcal Atomic # 7 Polarization: -50.33 SS G_CDS: -1.05 Total: -51.38 kcal Atomic # 8 Polarization: -5.19 SS G_CDS: -0.38 Total: -5.57 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -5.03 Total: 17.07 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -30.61 -7.86 -38.48 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610370185.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.254 kcal (2) G-P(sol) polarization free energy of solvation -30.613 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.359 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.863 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.476 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.221 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds