Wall clock time and date at job start Thu Apr 9 2020 12:00:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.36940 * 120.00186 * 2 1 4 4 H 1.07999 * 120.00105 * 202.33968 * 3 2 1 5 5 C 1.38807 * 119.99740 * 22.34639 * 3 2 1 6 6 N 1.31613 * 120.00244 * 11.34159 * 5 3 2 7 7 Si 1.86803 * 119.99864 * 191.34692 * 5 3 2 8 8 H 1.48498 * 109.46997 * 59.99466 * 7 5 3 9 9 H 1.48491 * 109.47349 * 179.97438 * 7 5 3 10 10 H 1.48493 * 109.47130 * 299.99998 * 7 5 3 11 11 C 1.46501 * 119.99971 * 179.97438 * 2 1 3 12 12 C 1.52999 * 109.47355 * 270.00142 * 11 2 1 13 13 C 1.53003 * 109.47177 * 179.97438 * 12 11 2 14 14 N 1.46902 * 109.46766 * 180.02562 * 13 12 11 15 15 C 1.47007 * 111.00197 * 293.63327 * 14 13 12 16 16 C 1.53096 * 109.25912 * 177.60864 * 15 14 13 17 17 O 1.43019 * 109.25871 * 56.85271 * 16 15 14 18 18 C 1.43021 * 113.73553 * 301.32914 * 17 16 15 19 19 C 1.47014 * 110.99581 * 170.00312 * 14 13 12 20 20 H 1.08996 * 109.47508 * 274.21250 * 1 2 3 21 21 H 1.08998 * 109.46865 * 34.21271 * 1 2 3 22 22 H 1.09007 * 109.47074 * 154.20917 * 1 2 3 23 23 H 0.97008 * 120.00305 * 180.02562 * 6 5 3 24 24 H 1.09001 * 109.47062 * 150.00314 * 11 2 1 25 25 H 1.09001 * 109.47282 * 30.00581 * 11 2 1 26 26 H 1.09001 * 109.46895 * 60.00069 * 12 11 2 27 27 H 1.09001 * 109.47283 * 300.00438 * 12 11 2 28 28 H 1.09001 * 109.47026 * 60.00303 * 13 12 11 29 29 H 1.08995 * 109.46985 * 300.00005 * 13 12 11 30 30 H 1.08997 * 109.50981 * 297.54420 * 15 14 13 31 31 H 1.09000 * 109.50524 * 57.67813 * 15 14 13 32 32 H 1.09003 * 109.51071 * 296.91367 * 16 15 14 33 33 H 1.09003 * 109.54501 * 176.80736 * 16 15 14 34 34 H 1.09000 * 109.50565 * 298.73273 * 18 17 16 35 35 H 1.08993 * 109.53975 * 178.62513 * 18 17 16 36 36 H 1.09010 * 109.50853 * 302.32494 * 19 14 13 37 37 H 1.08997 * 109.51285 * 62.41164 * 19 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1689 1.2210 -0.3555 5 6 1.5338 2.3429 0.4571 6 7 0.3842 2.2690 1.0935 7 14 2.3367 4.0047 0.1687 8 1 2.4916 4.2331 -1.2904 9 1 1.4846 5.0735 0.7488 10 1 3.6720 4.0287 0.8179 11 6 2.1975 -1.2687 0.0006 12 6 2.4525 -1.7098 1.4432 13 6 3.2169 -3.0352 1.4438 14 7 3.4612 -3.4589 2.8290 15 6 4.3787 -2.5334 3.5091 16 6 4.5580 -2.9776 4.9632 17 8 5.0323 -4.3266 4.9892 18 6 4.1625 -5.2553 4.3361 19 6 3.9792 -4.8340 2.8756 20 1 -0.3634 0.0755 1.0248 21 1 -0.3633 0.8498 -0.5778 22 1 -0.3633 -0.9254 -0.4472 23 1 -0.0464 3.0776 1.4126 24 1 3.1499 -1.1386 -0.5133 25 1 1.6084 -2.0286 -0.5130 26 1 1.5000 -1.8400 1.9571 27 1 3.0415 -0.9500 1.9568 28 1 4.1693 -2.9055 0.9298 29 1 2.6274 -3.7948 0.9304 30 1 5.3446 -2.5417 3.0042 31 1 3.9633 -1.5259 3.4850 32 1 3.6016 -2.9179 5.4827 33 1 5.2812 -2.3280 5.4564 34 1 3.1946 -5.2618 4.8373 35 1 4.5993 -6.2531 4.3750 36 1 3.2722 -5.5061 2.3890 37 1 4.9383 -4.8794 2.3599 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000610370185.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:00:08 Heat of formation + Delta-G solvation = -41.137824 kcal Electronic energy + Delta-G solvation = -16343.795040 eV Core-core repulsion = 13735.016052 eV Total energy + Delta-G solvation = -2608.778988 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 228.158 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.53145 -38.02457 -36.78345 -33.92665 -32.22683 -31.82258 -28.52737 -27.88007 -25.82112 -25.00479 -23.13201 -21.73725 -21.30272 -18.76356 -17.57547 -17.12606 -16.74750 -16.40107 -15.98920 -15.86312 -15.58083 -15.25807 -14.81420 -14.61453 -14.20042 -13.40625 -13.10846 -12.98971 -12.73215 -12.65074 -12.52709 -12.39429 -12.32286 -12.05040 -11.94466 -11.80473 -11.55344 -11.24592 -10.67471 -10.62432 -9.37492 -8.78368 -7.82032 -5.29991 1.45777 1.48209 1.54897 2.51182 2.75233 2.96382 3.32388 3.70248 3.92305 4.00702 4.04395 4.18513 4.20980 4.32407 4.51330 4.58808 4.64316 4.66408 4.71317 4.79282 4.84177 4.85027 4.89450 4.96726 5.03815 5.32958 5.33710 5.50646 5.64700 5.74153 5.96549 6.04971 6.16483 6.34515 7.16365 7.89233 8.32698 9.21776 Molecular weight = 228.16amu Principal moments of inertia in cm(-1) A = 0.036309 B = 0.005621 C = 0.005197 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 770.974936 B = 4980.098100 C = 5386.867749 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.179 3.821 2 N -0.622 5.622 3 C -0.263 4.263 4 H 0.069 0.931 5 C -0.055 4.055 6 N -0.941 5.941 7 Si 0.969 3.031 8 H -0.278 1.278 9 H -0.294 1.294 10 H -0.276 1.276 11 C 0.151 3.849 12 C -0.115 4.115 13 C 0.070 3.930 14 N -0.550 5.550 15 C 0.017 3.983 16 C 0.067 3.933 17 O -0.403 6.403 18 C 0.061 3.939 19 C 0.017 3.983 20 H 0.000 1.000 21 H 0.017 0.983 22 H 0.030 0.970 23 H 0.247 0.753 24 H 0.045 0.955 25 H 0.059 0.941 26 H 0.040 0.960 27 H 0.034 0.966 28 H 0.034 0.966 29 H 0.088 0.912 30 H 0.037 0.963 31 H 0.075 0.925 32 H 0.057 0.943 33 H 0.112 0.888 34 H 0.059 0.941 35 H 0.121 0.879 36 H 0.101 0.899 37 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.247 -14.229 3.960 16.452 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 N -0.345 5.345 3 C -0.393 4.393 4 H 0.087 0.913 5 C -0.249 4.249 6 N -0.588 5.588 7 Si 0.797 3.203 8 H -0.204 1.204 9 H -0.220 1.220 10 H -0.202 1.202 11 C 0.025 3.975 12 C -0.156 4.156 13 C -0.058 4.058 14 N -0.276 5.276 15 C -0.112 4.112 16 C -0.010 4.010 17 O -0.322 6.322 18 C -0.016 4.016 19 C -0.111 4.111 20 H 0.018 0.982 21 H 0.036 0.964 22 H 0.048 0.952 23 H 0.057 0.943 24 H 0.064 0.936 25 H 0.078 0.922 26 H 0.059 0.941 27 H 0.053 0.947 28 H 0.052 0.948 29 H 0.107 0.893 30 H 0.055 0.945 31 H 0.093 0.907 32 H 0.075 0.925 33 H 0.130 0.870 34 H 0.077 0.923 35 H 0.139 0.861 36 H 0.120 0.880 37 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 6.866 -14.159 4.337 16.323 hybrid contribution 0.548 1.393 -0.530 1.588 sum 7.414 -12.766 3.808 15.245 Atomic orbital electron populations 1.20525 0.82806 0.95937 0.97371 1.44234 1.02221 1.01897 1.86181 1.19506 0.98082 0.86728 1.34965 0.91276 1.25795 0.98471 1.01879 0.98787 1.70237 1.19295 1.27470 1.41791 0.85320 0.77638 0.79480 0.77892 1.20364 1.22010 1.20174 1.20946 0.95618 0.86745 0.94238 1.21986 0.98955 0.95262 0.99363 1.22023 0.98746 0.97069 0.87957 1.62224 1.45837 1.02701 1.16834 1.22780 0.94657 0.97517 0.96218 1.22696 1.00556 0.83218 0.94490 1.87934 1.48674 1.17840 1.77721 1.22839 0.94792 0.93369 0.90552 1.22870 0.99509 0.90086 0.98617 0.98176 0.96429 0.95151 0.94342 0.93641 0.92238 0.94102 0.94720 0.94767 0.89350 0.94460 0.90701 0.92469 0.87009 0.92290 0.86083 0.88047 0.94249 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 9.14 9.01 127.77 1.15 10.29 16 2 N -0.62 -32.06 2.93 -726.94 -2.13 -34.19 16 3 C -0.26 -14.72 9.67 84.03 0.81 -13.91 16 4 H 0.07 3.75 7.84 -2.91 -0.02 3.73 16 5 C -0.05 -3.12 5.13 84.86 0.44 -2.69 16 6 N -0.94 -56.93 10.58 21.65 0.23 -56.70 16 7 Si 0.97 45.71 29.57 68.60 2.03 47.74 16 8 H -0.28 -12.67 7.11 99.48 0.71 -11.97 16 9 H -0.29 -13.93 7.11 99.48 0.71 -13.22 16 10 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 11 C 0.15 6.11 5.71 86.38 0.49 6.61 16 12 C -0.12 -4.35 5.47 30.60 0.17 -4.18 16 13 C 0.07 2.02 4.96 86.30 0.43 2.45 16 14 N -0.55 -15.17 4.73 -895.22 -4.23 -19.41 16 15 C 0.02 0.46 5.44 86.32 0.47 0.93 16 16 C 0.07 1.62 7.01 72.01 0.50 2.12 16 17 O -0.40 -9.92 10.83 -148.98 -1.61 -11.53 16 18 C 0.06 1.20 7.01 72.02 0.50 1.70 16 19 C 0.02 0.36 5.64 86.32 0.49 0.85 16 20 H 0.00 0.00 7.42 -2.39 -0.02 -0.02 16 21 H 0.02 0.95 7.19 -2.39 -0.02 0.93 16 22 H 0.03 1.31 7.85 -2.38 -0.02 1.29 16 23 H 0.25 14.56 8.31 -92.70 -0.77 13.79 16 24 H 0.05 1.78 8.03 -2.39 -0.02 1.76 16 25 H 0.06 2.12 7.86 -2.39 -0.02 2.10 16 26 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 27 H 0.03 1.48 6.52 -2.39 -0.02 1.46 16 28 H 0.03 0.96 8.12 -2.39 -0.02 0.94 16 29 H 0.09 2.23 8.04 -2.39 -0.02 2.21 16 30 H 0.04 1.04 8.14 -2.39 -0.02 1.02 16 31 H 0.07 2.37 6.38 -2.39 -0.02 2.36 16 32 H 0.06 1.39 8.14 -2.39 -0.02 1.38 16 33 H 0.11 2.28 8.14 -2.39 -0.02 2.26 16 34 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 35 H 0.12 1.70 8.14 -2.39 -0.02 1.68 16 36 H 0.10 1.79 8.09 -2.38 -0.02 1.77 16 37 H 0.04 0.84 8.14 -2.39 -0.02 0.83 16 Total: -1.00 -65.41 293.64 0.75 -64.65 By element: Atomic # 1 Polarization: 4.25 SS G_CDS: 1.01 Total: 5.26 kcal Atomic # 6 Polarization: -1.28 SS G_CDS: 5.45 Total: 4.17 kcal Atomic # 7 Polarization: -104.16 SS G_CDS: -6.13 Total: -110.29 kcal Atomic # 8 Polarization: -9.92 SS G_CDS: -1.61 Total: -11.53 kcal Atomic # 14 Polarization: 45.71 SS G_CDS: 2.03 Total: 47.74 kcal Total: -65.41 0.75 -64.65 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610370185.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.517 kcal (2) G-P(sol) polarization free energy of solvation -65.405 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.889 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.751 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.655 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.138 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds