Wall clock time and date at job start Thu Apr 9 2020 12:00:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42901 * 114.00267 * 2 1 4 4 H 1.09001 * 110.28646 * 330.70139 * 3 2 1 5 5 C 1.54256 * 110.32153 * 92.82980 * 3 2 1 6 6 C 1.54382 * 105.06092 * 118.89858 * 5 3 2 7 7 N 1.48562 * 104.59312 * 23.84852 * 6 5 3 8 8 C 1.46894 * 111.00111 * 200.95898 * 7 6 5 9 9 C 1.50697 * 109.47252 * 290.13012 * 8 7 6 10 10 O 1.21294 * 120.00185 * 359.97438 * 9 8 7 11 11 N 1.34784 * 119.99876 * 179.97438 * 9 8 7 12 12 C 1.37095 * 119.99697 * 179.97438 * 11 9 8 13 13 H 1.08004 * 120.00269 * 0.02562 * 12 11 9 14 14 C 1.38948 * 119.99922 * 179.97438 * 12 11 9 15 15 N 1.31414 * 119.99889 * 0.02562 * 14 12 11 16 16 Si 1.86805 * 120.00173 * 180.02562 * 14 12 11 17 17 H 1.48498 * 109.46892 * 0.02562 * 16 14 12 18 18 H 1.48497 * 109.47101 * 120.00400 * 16 14 12 19 19 H 1.48500 * 109.47137 * 240.00276 * 16 14 12 20 20 C 1.48726 * 104.28960 * 320.57576 * 7 6 5 21 21 H 1.09002 * 109.47382 * 179.97438 * 1 2 3 22 22 H 1.09001 * 109.46938 * 59.99878 * 1 2 3 23 23 H 1.09004 * 109.46926 * 299.99999 * 1 2 3 24 24 H 1.09001 * 110.32208 * 237.78867 * 5 3 2 25 25 H 1.08997 * 110.32857 * 359.89662 * 5 3 2 26 26 H 1.08993 * 110.41167 * 142.62867 * 6 5 3 27 27 H 1.09001 * 110.41080 * 265.07288 * 6 5 3 28 28 H 1.09003 * 109.47076 * 50.12909 * 8 7 6 29 29 H 1.08996 * 109.47586 * 170.12704 * 8 7 6 30 30 H 0.96996 * 119.99983 * 0.02562 * 11 9 8 31 31 H 0.96999 * 119.99676 * 180.02562 * 15 14 12 32 32 H 1.08995 * 110.38740 * 280.63950 * 20 7 6 33 33 H 1.08994 * 110.50667 * 158.14703 * 20 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3495 2.0134 -0.5003 5 6 2.2935 1.7658 1.4448 6 6 3.8215 1.9774 1.5062 7 7 4.2221 2.2245 0.0971 8 6 5.6531 1.9568 -0.0981 9 6 6.4628 3.0131 0.6088 10 8 5.9028 3.9019 1.2151 11 7 7.8093 2.9701 0.5672 12 6 8.5459 3.9314 1.2099 13 1 8.0472 4.7228 1.7498 14 6 9.9340 3.8869 1.1675 15 7 10.5408 2.9237 0.5110 16 14 10.9377 5.1963 2.0437 17 1 10.0229 6.1612 2.7049 18 1 11.8030 4.5550 3.0661 19 1 11.7851 5.9131 1.0572 20 6 3.3898 1.2781 -0.6925 21 1 -0.3634 -1.0277 -0.0005 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 0.5139 0.8900 24 1 1.7732 2.7007 1.6531 25 1 1.9874 0.9968 2.1541 26 1 4.0610 2.8410 2.1265 27 1 4.3139 1.0840 1.8903 28 1 5.8985 0.9766 0.3110 29 1 5.8842 1.9741 -1.1631 30 1 8.2572 2.2596 0.0820 31 1 11.5098 2.8924 0.4817 32 1 3.8149 0.2752 -0.6536 33 1 3.3035 1.6155 -1.7253 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000610605511.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:00:10 Heat of formation + Delta-G solvation = -97.432401 kcal Electronic energy + Delta-G solvation = -15864.216025 eV Core-core repulsion = 13117.162827 eV Total energy + Delta-G solvation = -2747.053198 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 228.126 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.74387 -39.61778 -37.60839 -35.90387 -33.34567 -32.48223 -29.80259 -28.29684 -27.05257 -25.94717 -22.51711 -21.82535 -20.97157 -19.88130 -18.02623 -17.61804 -17.15632 -16.57909 -16.20271 -15.86943 -15.74708 -15.36578 -14.94160 -14.70978 -14.25483 -13.60532 -13.46735 -13.13039 -12.93834 -12.70911 -12.57002 -12.40074 -12.33583 -12.22060 -12.10354 -11.52874 -11.48688 -10.58000 -10.31880 -10.01135 -9.44475 -8.46578 -5.95398 1.36840 1.41901 1.56389 2.04517 2.27433 2.54316 3.10502 3.19807 3.38078 3.60403 3.80028 4.05928 4.24395 4.28671 4.38577 4.50453 4.51341 4.58990 4.60201 4.72587 4.84093 4.90125 4.91382 5.04018 5.11796 5.41143 5.76652 5.82884 6.05822 6.30545 6.60479 7.12882 7.55779 8.11660 8.71274 Molecular weight = 228.13amu Principal moments of inertia in cm(-1) A = 0.080480 B = 0.004834 C = 0.004670 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 347.829318 B = 5791.248831 C = 5993.946006 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.403 6.403 3 C 0.090 3.910 4 H 0.088 0.912 5 C -0.138 4.138 6 C 0.038 3.962 7 N -0.505 5.505 8 C 0.047 3.953 9 C 0.442 3.558 10 O -0.616 6.616 11 N -0.574 5.574 12 C -0.333 4.333 13 H 0.079 0.921 14 C -0.013 4.013 15 N -0.921 5.921 16 Si 0.994 3.006 17 H -0.273 1.273 18 H -0.271 1.271 19 H -0.270 1.270 20 C 0.034 3.966 21 H 0.098 0.902 22 H 0.053 0.947 23 H 0.048 0.952 24 H 0.081 0.919 25 H 0.085 0.915 26 H 0.064 0.936 27 H 0.036 0.964 28 H 0.068 0.932 29 H 0.113 0.887 30 H 0.396 0.604 31 H 0.278 0.722 32 H 0.057 0.943 33 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.099 -6.848 -2.620 16.785 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.321 6.321 3 C 0.032 3.968 4 H 0.106 0.894 5 C -0.176 4.176 6 C -0.090 4.090 7 N -0.230 5.230 8 C -0.085 4.085 9 C 0.230 3.770 10 O -0.501 6.501 11 N -0.212 5.212 12 C -0.462 4.462 13 H 0.097 0.903 14 C -0.213 4.213 15 N -0.562 5.562 16 Si 0.818 3.182 17 H -0.198 1.198 18 H -0.196 1.196 19 H -0.195 1.195 20 C -0.094 4.094 21 H 0.116 0.884 22 H 0.072 0.928 23 H 0.067 0.933 24 H 0.099 0.901 25 H 0.104 0.896 26 H 0.083 0.917 27 H 0.055 0.945 28 H 0.086 0.914 29 H 0.131 0.869 30 H 0.230 0.770 31 H 0.087 0.913 32 H 0.076 0.924 33 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -15.250 -5.916 -2.412 16.534 hybrid contribution 1.052 -0.353 0.465 1.203 sum -14.198 -6.269 -1.947 15.642 Atomic orbital electron populations 1.22989 0.79364 1.03857 1.00953 1.87892 1.21621 1.27591 1.95042 1.22783 0.94423 0.84697 0.94927 0.89380 1.22811 0.94504 1.02348 0.97921 1.23029 0.95975 0.99530 0.90509 1.65114 1.02571 1.48507 1.06777 1.21925 0.88659 0.95800 1.02084 1.20685 0.82631 0.88652 0.85075 1.90473 1.71240 1.39977 1.48456 1.41928 1.04875 1.26720 1.47679 1.19704 0.89223 1.06981 1.30302 0.90324 1.26051 0.97312 0.99996 0.97930 1.69683 1.10777 1.33337 1.42449 0.84857 0.77708 0.77646 0.78031 1.19797 1.19580 1.19533 1.23250 0.92192 0.95267 0.98662 0.88365 0.92813 0.93348 0.90054 0.89618 0.91724 0.94534 0.91396 0.86893 0.77022 0.91294 0.92437 0.87938 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.36 10.86 113.37 1.23 1.59 16 2 O -0.40 -9.01 10.31 -148.98 -1.54 -10.54 16 3 C 0.09 2.09 3.53 31.49 0.11 2.20 16 4 H 0.09 1.77 7.83 -2.39 -0.02 1.75 16 5 C -0.14 -3.51 6.81 31.49 0.21 -3.30 16 6 C 0.04 1.27 5.80 86.45 0.50 1.78 16 7 N -0.50 -17.39 5.06 -885.62 -4.48 -21.88 16 8 C 0.05 1.72 5.30 85.56 0.45 2.17 16 9 C 0.44 21.81 7.58 87.65 0.66 22.47 16 10 O -0.62 -34.97 14.42 -3.07 -0.04 -35.02 16 11 N -0.57 -30.25 5.29 -306.98 -1.62 -31.88 16 12 C -0.33 -19.24 9.68 84.04 0.81 -18.42 16 13 H 0.08 4.85 7.16 -2.91 -0.02 4.83 16 14 C -0.01 -0.72 5.50 84.93 0.47 -0.26 16 15 N -0.92 -50.36 13.05 21.66 0.28 -50.08 16 16 Si 0.99 43.44 29.55 68.60 2.03 45.47 16 17 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 18 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 19 H -0.27 -11.27 7.11 99.48 0.71 -10.57 16 20 C 0.03 0.88 6.25 86.42 0.54 1.42 16 21 H 0.10 1.13 8.14 -2.39 -0.02 1.12 16 22 H 0.05 0.66 8.10 -2.39 -0.02 0.64 16 23 H 0.05 0.64 8.14 -2.38 -0.02 0.62 16 24 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 25 H 0.09 1.99 7.98 -2.39 -0.02 1.97 16 26 H 0.06 2.64 6.91 -2.39 -0.02 2.62 16 27 H 0.04 1.23 7.82 -2.39 -0.02 1.21 16 28 H 0.07 2.27 7.88 -2.39 -0.02 2.25 16 29 H 0.11 3.62 8.13 -2.39 -0.02 3.60 16 30 H 0.40 19.79 7.90 -92.71 -0.73 19.06 16 31 H 0.28 14.13 8.31 -92.71 -0.77 13.36 16 32 H 0.06 1.48 7.94 -2.39 -0.02 1.46 16 33 H 0.10 2.34 8.14 -2.39 -0.02 2.32 16 Total: -1.00 -68.04 278.82 -0.01 -68.05 By element: Atomic # 1 Polarization: 25.85 SS G_CDS: 0.37 Total: 26.22 kcal Atomic # 6 Polarization: 4.66 SS G_CDS: 5.00 Total: 9.65 kcal Atomic # 7 Polarization: -98.01 SS G_CDS: -5.82 Total: -103.83 kcal Atomic # 8 Polarization: -43.98 SS G_CDS: -1.58 Total: -45.56 kcal Atomic # 14 Polarization: 43.44 SS G_CDS: 2.03 Total: 45.47 kcal Total: -68.04 -0.01 -68.05 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610605511.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.383 kcal (2) G-P(sol) polarization free energy of solvation -68.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.426 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.049 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.432 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds