Wall clock time and date at job start Thu Apr 9 2020 12:00:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.08991 * 109.46841 * 2 1 4 4 O 1.42891 * 109.47176 * 120.00649 * 2 1 3 5 5 C 1.50704 * 109.46532 * 240.00429 * 2 1 3 6 6 O 1.21288 * 119.99958 * 244.99271 * 5 2 1 7 7 N 1.34775 * 120.00211 * 64.72693 * 5 2 1 8 8 C 1.46961 * 120.59194 * 359.97438 * 7 5 2 9 9 C 1.53811 * 108.39944 * 124.75837 * 8 7 5 10 10 N 1.46960 * 108.57870 * 49.63843 * 9 8 7 11 11 C 1.36942 * 120.59771 * 124.62777 * 10 9 8 12 12 H 1.08003 * 119.99660 * 208.17894 * 11 10 9 13 13 C 1.38806 * 119.99809 * 28.17657 * 11 10 9 14 14 N 1.31622 * 120.00312 * 17.55998 * 13 11 10 15 15 Si 1.86808 * 119.99927 * 197.56209 * 13 11 10 16 16 H 1.48497 * 109.46877 * 59.99774 * 15 13 11 17 17 H 1.48497 * 109.47077 * 180.02562 * 15 13 11 18 18 H 1.48504 * 109.46850 * 300.00078 * 15 13 11 19 19 C 1.46967 * 118.81107 * 304.64208 * 10 9 8 20 20 C 1.46967 * 120.59402 * 180.26938 * 7 5 2 21 21 H 1.09007 * 109.46862 * 179.97438 * 1 2 3 22 22 H 1.08998 * 109.46715 * 299.99111 * 1 2 3 23 23 H 1.08999 * 109.46985 * 59.99458 * 1 2 3 24 24 H 0.96701 * 114.00288 * 59.99810 * 4 2 1 25 25 H 1.09006 * 109.60824 * 244.53999 * 8 7 5 26 26 H 1.09003 * 109.61378 * 5.04995 * 8 7 5 27 27 H 1.08998 * 109.74365 * 289.84625 * 9 8 7 28 28 H 1.09008 * 109.53499 * 169.30094 * 9 8 7 29 29 H 0.96998 * 120.00078 * 180.02562 * 14 13 11 30 30 H 1.08999 * 109.61110 * 295.48484 * 19 10 9 31 31 H 1.08998 * 109.75384 * 175.05522 * 19 10 9 32 32 H 1.08999 * 109.60868 * 354.94933 * 20 7 5 33 33 H 1.08998 * 109.60739 * 115.45722 * 20 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0064 -0.6737 1.1666 5 6 2.0323 -0.7104 -1.2306 6 8 2.6530 -1.7467 -1.1217 7 7 1.7870 -0.1970 -2.4524 8 6 1.0308 1.0545 -2.5997 9 6 1.8802 2.0416 -3.4181 10 7 2.3590 1.3569 -4.6271 11 6 2.1090 1.8781 -5.8685 12 1 2.0341 1.2231 -6.7240 13 6 1.9520 3.2481 -6.0273 14 7 2.3736 4.0717 -5.0912 15 14 1.1422 3.9228 -7.5696 16 1 -0.2390 3.3884 -7.6777 17 1 1.0957 5.4053 -7.4961 18 1 1.9269 3.5111 -8.7612 19 6 3.1106 0.1025 -4.4800 20 6 2.2656 -0.8819 -3.6614 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3633 0.5137 0.8901 23 1 -0.3633 0.5139 -0.8899 24 1 1.7211 -1.5953 1.2327 25 1 0.0932 0.8563 -3.1193 26 1 0.8245 1.4754 -1.6156 27 1 2.7318 2.3745 -2.8247 28 1 1.2705 2.8998 -3.7009 29 1 2.2635 5.0290 -5.2020 30 1 4.0497 0.2973 -3.9622 31 1 3.3159 -0.3213 -5.4629 32 1 2.8751 -1.7402 -3.3785 33 1 1.4139 -1.2146 -4.2546 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000611225660.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:00:14 Heat of formation + Delta-G solvation = -55.131877 kcal Electronic energy + Delta-G solvation = -16705.449129 eV Core-core repulsion = 13960.230219 eV Total energy + Delta-G solvation = -2745.218910 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 228.126 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.01748 -37.24928 -36.15694 -34.04358 -31.94997 -30.62664 -29.87174 -27.07672 -24.64968 -23.23160 -22.79602 -20.57782 -19.02656 -17.68414 -16.59064 -16.26482 -15.41574 -15.06657 -14.70453 -14.16617 -13.83372 -13.66105 -13.46525 -13.32329 -12.68970 -12.27913 -12.21155 -11.70283 -11.54007 -11.34372 -10.87026 -10.80910 -10.66326 -10.53807 -10.28851 -10.02905 -9.89602 -9.18736 -8.64666 -8.31970 -6.76971 -5.90634 -3.35047 2.84708 3.31833 3.33483 3.38098 3.39710 4.30937 4.40168 4.66898 4.94788 5.04196 5.20528 5.28972 5.53848 5.69534 5.71996 5.80906 5.89316 5.94613 6.05303 6.13371 6.28820 6.37244 6.73264 6.86345 7.13000 7.38609 7.50676 7.67310 7.83619 8.30625 8.44022 9.06835 9.69288 10.26274 11.17218 Molecular weight = 228.13amu Principal moments of inertia in cm(-1) A = 0.046587 B = 0.007189 C = 0.006675 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 600.882371 B = 3893.934455 C = 4193.936047 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.089 3.911 3 H 0.124 0.876 4 O -0.542 6.542 5 C 0.480 3.520 6 O -0.556 6.556 7 N -0.591 5.591 8 C 0.072 3.928 9 C 0.156 3.844 10 N -0.591 5.591 11 C -0.258 4.258 12 H 0.068 0.932 13 C 0.004 3.996 14 N -0.902 5.902 15 Si 0.905 3.095 16 H -0.283 1.283 17 H -0.290 1.290 18 H -0.282 1.282 19 C 0.131 3.869 20 C 0.094 3.906 21 H 0.061 0.939 22 H 0.074 0.926 23 H 0.083 0.917 24 H 0.380 0.620 25 H 0.067 0.933 26 H 0.077 0.923 27 H 0.025 0.975 28 H 0.101 0.899 29 H 0.256 0.744 30 H 0.024 0.976 31 H 0.067 0.933 32 H 0.081 0.919 33 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.253 -5.690 7.109 10.512 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C 0.027 3.973 3 H 0.142 0.858 4 O -0.347 6.347 5 C 0.268 3.732 6 O -0.435 6.435 7 N -0.325 5.325 8 C -0.052 4.052 9 C 0.029 3.971 10 N -0.314 5.314 11 C -0.387 4.387 12 H 0.085 0.915 13 C -0.195 4.195 14 N -0.546 5.546 15 Si 0.735 3.265 16 H -0.209 1.209 17 H -0.216 1.216 18 H -0.208 1.208 19 C 0.004 3.996 20 C -0.030 4.030 21 H 0.080 0.920 22 H 0.093 0.907 23 H 0.101 0.899 24 H 0.228 0.772 25 H 0.085 0.915 26 H 0.095 0.905 27 H 0.043 0.957 28 H 0.119 0.881 29 H 0.066 0.934 30 H 0.042 0.958 31 H 0.085 0.915 32 H 0.100 0.900 33 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -4.647 -5.451 7.255 10.195 hybrid contribution -0.665 0.024 -1.010 1.209 sum -5.312 -5.427 6.245 9.832 Atomic orbital electron populations 1.22636 0.94289 1.03403 1.04252 1.21797 0.94374 0.97410 0.83756 0.85843 1.86569 1.77698 1.29561 1.40879 1.21512 0.80347 0.85810 0.85570 1.90645 1.41988 1.24493 1.86391 1.48110 1.53897 1.24904 1.05544 1.22995 0.96066 0.85181 1.00922 1.21296 0.95899 0.93499 0.86399 1.43978 1.61171 1.23387 1.02832 1.19172 1.43583 0.89989 0.85956 0.91467 1.25069 1.00280 0.96263 0.97865 1.70005 1.47366 1.02405 1.34856 0.86331 0.79696 0.77709 0.82807 1.20939 1.21551 1.20792 1.21301 0.92843 0.87789 0.97628 1.22231 0.99079 0.96247 0.85465 0.91959 0.90705 0.89855 0.77193 0.91475 0.90495 0.95695 0.88066 0.93366 0.95831 0.91469 0.90026 0.91876 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.03 9.10 37.16 0.34 -1.69 16 2 C 0.09 1.23 3.17 -27.88 -0.09 1.14 16 3 H 0.12 1.66 7.48 -51.93 -0.39 1.27 16 4 O -0.54 -7.68 12.99 -55.09 -0.72 -8.40 16 5 C 0.48 8.34 7.11 -10.98 -0.08 8.27 16 6 O -0.56 -11.25 15.73 -14.31 -0.23 -11.48 16 7 N -0.59 -10.50 2.94 -172.19 -0.51 -11.01 16 8 C 0.07 1.23 5.21 -3.37 -0.02 1.22 16 9 C 0.16 3.44 5.53 -3.37 -0.02 3.42 16 10 N -0.59 -14.20 2.97 -171.75 -0.51 -14.71 16 11 C -0.26 -6.76 9.58 -15.06 -0.14 -6.91 16 12 H 0.07 1.73 7.89 -52.48 -0.41 1.32 16 13 C 0.00 0.11 4.90 -17.43 -0.09 0.02 16 14 N -0.90 -25.00 11.20 55.49 0.62 -24.38 16 15 Si 0.91 20.78 29.59 -169.99 -5.03 15.75 16 16 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 17 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 18 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 19 C 0.13 2.74 6.67 -3.58 -0.02 2.72 16 20 C 0.09 1.72 6.59 -3.58 -0.02 1.70 16 21 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 22 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 23 H 0.08 0.90 5.35 -51.93 -0.28 0.62 16 24 H 0.38 4.35 8.79 45.56 0.40 4.75 16 25 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 26 H 0.08 1.07 4.57 -51.93 -0.24 0.84 16 27 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.10 2.45 5.99 -51.92 -0.31 2.14 16 29 H 0.26 6.88 8.31 -40.82 -0.34 6.55 16 30 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.07 1.33 7.94 -51.93 -0.41 0.92 16 32 H 0.08 1.48 6.99 -51.93 -0.36 1.12 16 33 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 LS Contribution 266.76 15.07 4.02 4.02 Total: -1.00 -30.86 266.76 -6.16 -37.02 By element: Atomic # 1 Polarization: 6.97 SS G_CDS: -3.67 Total: 3.30 kcal Atomic # 6 Polarization: 10.03 SS G_CDS: -0.14 Total: 9.89 kcal Atomic # 7 Polarization: -49.71 SS G_CDS: -0.39 Total: -50.10 kcal Atomic # 8 Polarization: -18.94 SS G_CDS: -0.94 Total: -19.88 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.03 Total: 15.75 kcal Total LS contribution 4.02 Total: 4.02 kcal Total: -30.86 -6.16 -37.02 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611225660.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.108 kcal (2) G-P(sol) polarization free energy of solvation -30.863 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.971 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.024 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.132 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds