Wall clock time and date at job start Thu Apr 9 2020 12:00:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46891 * 109.46940 * 2 1 4 4 C 1.47014 * 111.00463 * 70.45408 * 3 2 1 5 5 C 1.53097 * 109.25912 * 182.39102 * 4 3 2 6 6 O 1.43008 * 109.26070 * 303.14916 * 5 4 3 7 7 C 1.43015 * 113.73680 * 58.67170 * 6 5 4 8 8 C 1.47018 * 111.00232 * 194.08929 * 3 2 1 9 9 H 1.09002 * 109.50608 * 297.54382 * 8 3 2 10 10 C 1.50702 * 109.50358 * 57.62422 * 8 3 2 11 11 O 1.21290 * 120.00301 * 28.15845 * 10 8 3 12 12 N 1.34784 * 119.99707 * 208.15515 * 10 8 3 13 13 C 1.37096 * 119.99385 * 180.02562 * 12 10 8 14 14 H 1.07996 * 120.00558 * 359.97438 * 13 12 10 15 15 C 1.38958 * 119.99794 * 180.02562 * 13 12 10 16 16 N 1.31405 * 120.00440 * 180.02562 * 15 13 12 17 17 Si 1.86806 * 119.99771 * 359.97438 * 15 13 12 18 18 H 1.48506 * 109.46683 * 89.99929 * 17 15 13 19 19 H 1.48490 * 109.46942 * 209.99946 * 17 15 13 20 20 H 1.48495 * 109.47070 * 330.00162 * 17 15 13 21 21 H 1.08992 * 109.46948 * 60.00069 * 1 2 3 22 22 H 1.09007 * 109.46691 * 180.02562 * 1 2 3 23 23 H 1.08998 * 109.47120 * 300.00083 * 1 2 3 24 24 H 1.08996 * 109.47189 * 239.99386 * 2 1 3 25 25 H 1.09004 * 109.46949 * 119.99543 * 2 1 3 26 26 H 1.09007 * 109.50409 * 302.32709 * 4 3 2 27 27 H 1.08998 * 109.50607 * 62.45574 * 4 3 2 28 28 H 1.09005 * 109.50486 * 63.08685 * 5 4 3 29 29 H 1.08998 * 109.50790 * 183.16835 * 5 4 3 30 30 H 1.09006 * 109.50772 * 181.39595 * 7 6 5 31 31 H 1.08995 * 109.51009 * 61.26563 * 7 6 5 32 32 H 0.96990 * 120.00340 * 0.02562 * 12 10 8 33 33 H 0.96991 * 120.00433 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0196 1.3849 0.0000 4 6 1.7624 2.0348 1.2934 5 6 2.2330 3.4902 1.2297 6 8 3.6176 3.5231 0.8733 7 6 3.9040 2.8994 -0.3814 8 6 3.4504 1.4380 -0.3341 9 1 4.0215 0.9040 0.4253 10 6 3.6773 0.7959 -1.6785 11 8 2.7940 0.8007 -2.5097 12 7 4.8618 0.2162 -1.9571 13 6 5.0683 -0.3675 -3.1802 14 1 4.2819 -0.3632 -3.9204 15 6 6.2893 -0.9656 -3.4674 16 7 6.4875 -1.5246 -4.6399 17 14 7.6494 -0.9736 -2.1869 18 1 7.5313 -2.1927 -1.3471 19 1 8.9694 -0.9669 -2.8669 20 1 7.5284 0.2322 -1.3288 21 1 -0.3633 0.5138 -0.8899 22 1 -0.3633 -1.0278 0.0005 23 1 -0.3633 0.5138 0.8900 24 1 1.8934 -0.5139 -0.8899 25 1 1.8934 -0.5138 0.8901 26 1 0.6941 2.0067 1.5087 27 1 2.3065 1.5104 2.0788 28 1 1.6515 4.0284 0.4810 29 1 2.0960 3.9600 2.2036 30 1 4.9764 2.9416 -0.5725 31 1 3.3712 3.4203 -1.1769 32 1 5.5680 0.2120 -1.2922 33 1 7.3399 -1.9418 -4.8405 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000611238937.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:00:17 Heat of formation + Delta-G solvation = -68.113345 kcal Electronic energy + Delta-G solvation = -16657.175127 eV Core-core repulsion = 13911.393298 eV Total energy + Delta-G solvation = -2745.781828 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 228.126 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.93278 -37.83717 -35.82203 -33.96722 -31.90721 -31.14066 -30.69725 -26.60884 -25.40553 -23.76222 -21.84659 -20.64001 -19.32894 -18.35301 -16.44990 -16.22826 -16.00883 -15.11712 -14.82980 -14.71582 -14.17589 -13.81098 -13.52678 -13.19629 -12.92147 -12.55253 -12.12884 -11.95677 -11.76363 -11.48526 -11.24690 -11.21577 -10.65409 -10.62238 -10.37331 -10.01734 -9.67749 -9.54900 -8.52172 -8.23111 -8.09368 -6.35871 -3.87590 3.00303 3.04657 3.13013 3.54601 3.87842 3.92273 4.06622 4.61343 4.96435 5.07452 5.16204 5.22371 5.27704 5.37556 5.47031 5.59513 5.67451 5.69899 5.77308 5.85391 5.88511 6.02978 6.09523 6.34430 6.44404 7.09064 7.18606 7.23207 7.53431 8.08353 8.54679 8.89596 9.36656 9.76470 10.76852 Molecular weight = 228.13amu Principal moments of inertia in cm(-1) A = 0.031853 B = 0.008329 C = 0.007306 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 878.827356 B = 3360.900210 C = 3831.778665 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.047 3.953 3 N -0.510 5.510 4 C 0.016 3.984 5 C 0.062 3.938 6 O -0.386 6.386 7 C 0.077 3.923 8 C 0.039 3.961 9 H 0.054 0.946 10 C 0.455 3.545 11 O -0.553 6.553 12 N -0.586 5.586 13 C -0.307 4.307 14 H 0.121 0.879 15 C 0.044 3.956 16 N -0.878 5.878 17 Si 0.877 3.123 18 H -0.270 1.270 19 H -0.275 1.275 20 H -0.268 1.268 21 H 0.066 0.934 22 H 0.055 0.945 23 H 0.047 0.953 24 H 0.092 0.908 25 H 0.026 0.974 26 H 0.088 0.912 27 H 0.038 0.962 28 H 0.060 0.940 29 H 0.095 0.905 30 H 0.101 0.899 31 H 0.069 0.931 32 H 0.370 0.630 33 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.532 5.850 13.345 15.585 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.080 4.080 3 N -0.236 5.236 4 C -0.112 4.112 5 C -0.015 4.015 6 O -0.304 6.304 7 C -0.001 4.001 8 C -0.074 4.074 9 H 0.072 0.928 10 C 0.240 3.760 11 O -0.435 6.435 12 N -0.226 5.226 13 C -0.435 4.435 14 H 0.139 0.861 15 C -0.159 4.159 16 N -0.517 5.517 17 Si 0.703 3.297 18 H -0.196 1.196 19 H -0.200 1.200 20 H -0.194 1.194 21 H 0.085 0.915 22 H 0.074 0.926 23 H 0.066 0.934 24 H 0.110 0.890 25 H 0.044 0.956 26 H 0.106 0.894 27 H 0.057 0.943 28 H 0.079 0.921 29 H 0.113 0.887 30 H 0.119 0.881 31 H 0.087 0.913 32 H 0.203 0.797 33 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -6.104 6.069 12.364 15.065 hybrid contribution 1.485 -0.786 1.386 2.179 sum -4.619 5.282 13.750 15.437 Atomic orbital electron populations 1.21702 0.94883 1.01176 1.01990 1.22175 0.96207 0.88147 1.01463 1.61930 1.14596 1.18166 1.28928 1.22860 1.01853 0.95904 0.90575 1.22659 0.82757 0.95201 1.00856 1.87957 1.25193 1.78608 1.38651 1.22592 1.01328 0.90049 0.86082 1.22209 0.89787 0.98171 0.97188 0.92833 1.19309 0.83859 0.84357 0.88478 1.90579 1.43007 1.61341 1.48528 1.42292 1.12805 1.51705 1.15777 1.19436 1.01475 1.31637 0.90971 0.86145 1.25034 0.97481 0.96876 0.96548 1.69610 1.25189 1.36310 1.20630 0.86710 0.82566 0.78819 0.81601 1.19586 1.20005 1.19367 0.91528 0.92554 0.93442 0.88988 0.95576 0.89423 0.94335 0.92150 0.88713 0.88095 0.91302 0.79675 0.91510 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.91 9.93 37.16 0.37 -1.54 16 2 C 0.05 0.78 5.36 -3.83 -0.02 0.76 16 3 N -0.51 -8.57 4.24 -227.73 -0.97 -9.53 16 4 C 0.02 0.21 5.46 -3.71 -0.02 0.19 16 5 C 0.06 0.77 7.01 37.21 0.26 1.04 16 6 O -0.39 -5.86 10.83 -35.23 -0.38 -6.25 16 7 C 0.08 1.27 6.28 37.21 0.23 1.50 16 8 C 0.04 0.71 2.37 -68.75 -0.16 0.55 16 9 H 0.05 0.92 8.14 -51.93 -0.42 0.49 16 10 C 0.46 10.40 5.72 -10.98 -0.06 10.34 16 11 O -0.55 -14.79 15.15 5.55 0.08 -14.70 16 12 N -0.59 -13.97 5.09 -10.96 -0.06 -14.02 16 13 C -0.31 -8.58 10.16 -14.93 -0.15 -8.73 16 14 H 0.12 3.84 7.39 -52.49 -0.39 3.46 16 15 C 0.04 1.20 5.50 -17.47 -0.10 1.10 16 16 N -0.88 -25.39 13.96 55.50 0.77 -24.61 16 17 Si 0.88 19.28 27.74 -169.99 -4.71 14.57 16 18 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 19 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 20 H -0.27 -5.41 6.52 56.52 0.37 -5.04 16 21 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16 22 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 23 H 0.05 0.55 6.66 -51.93 -0.35 0.20 16 24 H 0.09 1.84 5.97 -51.93 -0.31 1.53 16 25 H 0.03 0.39 8.07 -51.93 -0.42 -0.03 16 26 H 0.09 0.97 6.55 -51.92 -0.34 0.63 16 27 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 29 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 30 H 0.10 1.56 8.14 -51.93 -0.42 1.13 16 31 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 32 H 0.37 7.87 5.76 -40.82 -0.24 7.63 16 33 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 LS Contribution 269.37 15.07 4.06 4.06 Total: -1.00 -31.43 269.37 -5.44 -36.87 By element: Atomic # 1 Polarization: 12.99 SS G_CDS: -4.59 Total: 8.40 kcal Atomic # 6 Polarization: 4.87 SS G_CDS: 0.35 Total: 5.21 kcal Atomic # 7 Polarization: -47.92 SS G_CDS: -0.25 Total: -48.17 kcal Atomic # 8 Polarization: -20.65 SS G_CDS: -0.30 Total: -20.95 kcal Atomic # 14 Polarization: 19.28 SS G_CDS: -4.71 Total: 14.57 kcal Total LS contribution 4.06 Total: 4.06 kcal Total: -31.43 -5.44 -36.87 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611238937.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.239 kcal (2) G-P(sol) polarization free energy of solvation -31.434 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.440 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.874 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds