Wall clock time and date at job start Thu Apr 9 2020 12:00:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46898 * 109.46851 * 2 1 4 4 C 1.47017 * 111.00200 * 288.16601 * 3 2 1 5 5 C 1.53098 * 109.25824 * 177.60983 * 4 3 2 6 6 O 1.43012 * 109.25702 * 56.84673 * 5 4 3 7 7 C 1.43017 * 113.74307 * 301.33190 * 6 5 4 8 8 C 1.47016 * 110.99891 * 164.53453 * 3 2 1 9 9 H 1.08998 * 109.54370 * 62.43356 * 8 3 2 10 10 C 1.50706 * 109.50434 * 302.32865 * 8 3 2 11 11 O 1.21291 * 119.99742 * 331.88343 * 10 8 3 12 12 N 1.34770 * 119.99928 * 151.88754 * 10 8 3 13 13 C 1.37098 * 119.99909 * 179.97438 * 12 10 8 14 14 H 1.07998 * 120.00024 * 359.97438 * 13 12 10 15 15 C 1.38954 * 120.00105 * 179.97438 * 13 12 10 16 16 N 1.31406 * 119.99903 * 179.97438 * 15 13 12 17 17 Si 1.86799 * 119.99814 * 0.02562 * 15 13 12 18 18 H 1.48494 * 109.47268 * 89.99910 * 17 15 13 19 19 H 1.48494 * 109.47319 * 329.99913 * 17 15 13 20 20 H 1.48500 * 109.47073 * 210.00128 * 17 15 13 21 21 H 1.09001 * 109.46899 * 59.99953 * 1 2 3 22 22 H 1.09007 * 109.47022 * 179.97438 * 1 2 3 23 23 H 1.08998 * 109.46922 * 299.99610 * 1 2 3 24 24 H 1.09004 * 109.46680 * 240.00012 * 2 1 3 25 25 H 1.08991 * 109.46911 * 120.00136 * 2 1 3 26 26 H 1.08998 * 109.50397 * 57.67296 * 4 3 2 27 27 H 1.09001 * 109.50408 * 297.54432 * 4 3 2 28 28 H 1.09005 * 109.50273 * 296.91731 * 5 4 3 29 29 H 1.08997 * 109.50714 * 176.78620 * 5 4 3 30 30 H 1.09001 * 109.50521 * 298.73303 * 7 6 5 31 31 H 1.08995 * 109.50848 * 178.60585 * 7 6 5 32 32 H 0.97001 * 120.00184 * 359.97438 * 12 10 8 33 33 H 0.97002 * 119.99738 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.7918 2.0244 -1.3041 5 6 2.2610 3.4804 -1.2415 6 8 3.6372 3.5162 -0.8539 7 6 3.8951 2.9026 0.4119 8 6 3.4424 1.4408 0.3660 9 1 4.0311 0.9006 -0.3754 10 6 3.6386 0.8105 1.7208 11 8 2.7364 0.8221 2.5314 12 7 4.8165 0.2339 2.0316 13 6 4.9951 -0.3390 3.2642 14 1 4.1921 -0.3280 3.9863 15 6 6.2093 -0.9339 3.5845 16 7 6.3806 -1.4827 4.7661 17 14 7.5984 -0.9524 2.3358 18 1 8.4329 0.2641 2.5056 19 1 7.0306 -0.9755 0.9639 20 1 8.4362 -2.1605 2.5451 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 1.8933 -0.5139 -0.8900 25 1 1.8933 -0.5138 0.8899 26 1 0.7289 1.9945 -1.5433 27 1 2.3536 1.4937 -2.0727 28 1 1.6628 4.0244 -0.5105 29 1 2.1469 3.9420 -2.2222 30 1 3.3444 3.4298 1.1909 31 1 4.9627 2.9464 0.6269 32 1 5.5378 0.2243 1.3831 33 1 7.2281 -1.8983 4.9896 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000611238938.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:00:19 Heat of formation + Delta-G solvation = -68.187893 kcal Electronic energy + Delta-G solvation = -16657.892625 eV Core-core repulsion = 13912.107564 eV Total energy + Delta-G solvation = -2745.785061 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 228.126 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.93233 -37.83725 -35.81678 -33.96621 -31.90603 -31.13663 -30.70593 -26.60540 -25.40294 -23.76279 -21.84228 -20.64642 -19.32878 -18.35105 -16.44837 -16.23255 -16.00832 -15.11835 -14.82781 -14.71034 -14.17672 -13.80957 -13.53107 -13.18775 -12.91523 -12.55630 -12.13032 -11.94589 -11.76394 -11.48376 -11.25432 -11.21644 -10.68621 -10.58919 -10.37459 -10.01764 -9.66942 -9.55738 -8.52064 -8.22990 -8.09606 -6.35902 -3.87591 3.00122 3.04653 3.12976 3.55130 3.87579 3.92104 4.06611 4.61452 4.96241 5.07365 5.16517 5.22394 5.27522 5.37862 5.47034 5.60004 5.67519 5.70277 5.77440 5.85361 5.88379 6.03189 6.09506 6.34044 6.45448 7.09066 7.18504 7.23155 7.53434 8.08396 8.54674 8.89613 9.36683 9.76505 10.76827 Molecular weight = 228.13amu Principal moments of inertia in cm(-1) A = 0.031821 B = 0.008339 C = 0.007308 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 879.697969 B = 3357.107582 C = 3830.513818 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.048 3.952 3 N -0.510 5.510 4 C 0.017 3.983 5 C 0.062 3.938 6 O -0.386 6.386 7 C 0.077 3.923 8 C 0.039 3.961 9 H 0.054 0.946 10 C 0.455 3.545 11 O -0.553 6.553 12 N -0.587 5.587 13 C -0.307 4.307 14 H 0.121 0.879 15 C 0.044 3.956 16 N -0.878 5.878 17 Si 0.877 3.123 18 H -0.269 1.269 19 H -0.270 1.270 20 H -0.275 1.275 21 H 0.046 0.954 22 H 0.055 0.945 23 H 0.066 0.934 24 H 0.026 0.974 25 H 0.091 0.909 26 H 0.087 0.913 27 H 0.038 0.962 28 H 0.060 0.940 29 H 0.095 0.905 30 H 0.069 0.931 31 H 0.101 0.899 32 H 0.370 0.630 33 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.207 5.762 -13.492 15.567 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.080 4.080 3 N -0.236 5.236 4 C -0.112 4.112 5 C -0.015 4.015 6 O -0.304 6.304 7 C -0.001 4.001 8 C -0.074 4.074 9 H 0.072 0.928 10 C 0.240 3.760 11 O -0.434 6.434 12 N -0.226 5.226 13 C -0.435 4.435 14 H 0.139 0.861 15 C -0.159 4.159 16 N -0.517 5.517 17 Si 0.703 3.297 18 H -0.194 1.194 19 H -0.195 1.195 20 H -0.201 1.201 21 H 0.065 0.935 22 H 0.074 0.926 23 H 0.085 0.915 24 H 0.044 0.956 25 H 0.109 0.891 26 H 0.106 0.894 27 H 0.057 0.943 28 H 0.079 0.921 29 H 0.113 0.887 30 H 0.087 0.913 31 H 0.119 0.881 32 H 0.203 0.797 33 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -5.802 5.990 -12.525 15.047 hybrid contribution 1.504 -0.824 -1.358 2.188 sum -4.298 5.165 -13.884 15.424 Atomic orbital electron populations 1.21695 0.94865 1.01143 1.02000 1.22170 0.96252 0.88123 1.01415 1.61934 1.15515 1.18502 1.27655 1.22859 1.01874 0.95973 0.90468 1.22661 0.82998 0.95192 1.00612 1.87957 1.25813 1.79063 1.37583 1.22594 1.01520 0.90176 0.85775 1.22213 0.89898 0.98192 0.97080 0.92822 1.19308 0.83932 0.84396 0.88367 1.90579 1.41478 1.61188 1.50202 1.42291 1.12564 1.52040 1.15691 1.19435 1.01366 1.32297 0.90421 0.86146 1.25033 0.97558 0.96881 0.96476 1.69617 1.25697 1.36633 1.19792 0.86705 0.82846 0.79040 0.81067 1.19408 1.19523 1.20057 0.93460 0.92580 0.91509 0.95559 0.89066 0.89444 0.94334 0.92138 0.88711 0.91291 0.88089 0.79673 0.91516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.91 9.96 37.16 0.37 -1.54 16 2 C 0.05 0.79 5.36 -3.82 -0.02 0.77 16 3 N -0.51 -8.58 4.23 -227.72 -0.96 -9.54 16 4 C 0.02 0.22 5.46 -3.71 -0.02 0.20 16 5 C 0.06 0.77 7.01 37.21 0.26 1.04 16 6 O -0.39 -5.84 10.83 -35.23 -0.38 -6.22 16 7 C 0.08 1.26 6.27 37.20 0.23 1.49 16 8 C 0.04 0.70 2.38 -68.75 -0.16 0.54 16 9 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 10 C 0.46 10.40 5.69 -10.99 -0.06 10.34 16 11 O -0.55 -14.79 15.17 5.55 0.08 -14.70 16 12 N -0.59 -13.97 5.09 -10.96 -0.06 -14.02 16 13 C -0.31 -8.58 10.16 -14.93 -0.15 -8.73 16 14 H 0.12 3.84 7.39 -52.49 -0.39 3.46 16 15 C 0.04 1.20 5.50 -17.47 -0.10 1.10 16 16 N -0.88 -25.39 13.96 55.50 0.77 -24.61 16 17 Si 0.88 19.29 27.74 -169.99 -4.71 14.58 16 18 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 19 H -0.27 -5.47 6.52 56.52 0.37 -5.10 16 20 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 21 H 0.05 0.55 6.72 -51.93 -0.35 0.20 16 22 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 23 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 24 H 0.03 0.40 8.05 -51.93 -0.42 -0.02 16 25 H 0.09 1.83 5.97 -51.93 -0.31 1.52 16 26 H 0.09 0.97 6.62 -51.93 -0.34 0.63 16 27 H 0.04 0.50 8.14 -51.93 -0.42 0.07 16 28 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 29 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 30 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 31 H 0.10 1.53 8.14 -51.93 -0.42 1.11 16 32 H 0.37 7.87 5.76 -40.82 -0.24 7.64 16 33 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 LS Contribution 269.49 15.07 4.06 4.06 Total: -1.00 -31.45 269.49 -5.44 -36.89 By element: Atomic # 1 Polarization: 12.96 SS G_CDS: -4.59 Total: 8.37 kcal Atomic # 6 Polarization: 4.85 SS G_CDS: 0.35 Total: 5.20 kcal Atomic # 7 Polarization: -47.93 SS G_CDS: -0.24 Total: -48.18 kcal Atomic # 8 Polarization: -20.63 SS G_CDS: -0.30 Total: -20.93 kcal Atomic # 14 Polarization: 19.29 SS G_CDS: -4.71 Total: 14.58 kcal Total LS contribution 4.06 Total: 4.06 kcal Total: -31.45 -5.44 -36.89 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611238938.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.295 kcal (2) G-P(sol) polarization free energy of solvation -31.453 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.748 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.440 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.892 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.188 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds