Wall clock time and date at job start Thu Apr 9 2020 12:00:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46898 * 109.46851 * 2 1 4 4 C 1.47017 * 111.00200 * 288.16601 * 3 2 1 5 5 C 1.53098 * 109.25824 * 177.60983 * 4 3 2 6 6 O 1.43012 * 109.25702 * 56.84673 * 5 4 3 7 7 C 1.43017 * 113.74307 * 301.33190 * 6 5 4 8 8 C 1.47016 * 110.99891 * 164.53453 * 3 2 1 9 9 H 1.08998 * 109.54370 * 62.43356 * 8 3 2 10 10 C 1.50706 * 109.50434 * 302.32865 * 8 3 2 11 11 O 1.21291 * 119.99742 * 331.88343 * 10 8 3 12 12 N 1.34770 * 119.99928 * 151.88754 * 10 8 3 13 13 C 1.37098 * 119.99909 * 179.97438 * 12 10 8 14 14 H 1.07998 * 120.00024 * 359.97438 * 13 12 10 15 15 C 1.38954 * 120.00105 * 179.97438 * 13 12 10 16 16 N 1.31406 * 119.99903 * 179.97438 * 15 13 12 17 17 Si 1.86799 * 119.99814 * 0.02562 * 15 13 12 18 18 H 1.48494 * 109.47268 * 89.99910 * 17 15 13 19 19 H 1.48494 * 109.47319 * 329.99913 * 17 15 13 20 20 H 1.48500 * 109.47073 * 210.00128 * 17 15 13 21 21 H 1.09001 * 109.46899 * 59.99953 * 1 2 3 22 22 H 1.09007 * 109.47022 * 179.97438 * 1 2 3 23 23 H 1.08998 * 109.46922 * 299.99610 * 1 2 3 24 24 H 1.09004 * 109.46680 * 240.00012 * 2 1 3 25 25 H 1.08991 * 109.46911 * 120.00136 * 2 1 3 26 26 H 1.08998 * 109.50397 * 57.67296 * 4 3 2 27 27 H 1.09001 * 109.50408 * 297.54432 * 4 3 2 28 28 H 1.09005 * 109.50273 * 296.91731 * 5 4 3 29 29 H 1.08997 * 109.50714 * 176.78620 * 5 4 3 30 30 H 1.09001 * 109.50521 * 298.73303 * 7 6 5 31 31 H 1.08995 * 109.50848 * 178.60585 * 7 6 5 32 32 H 0.97001 * 120.00184 * 359.97438 * 12 10 8 33 33 H 0.97002 * 119.99738 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.7918 2.0244 -1.3041 5 6 2.2610 3.4804 -1.2415 6 8 3.6372 3.5162 -0.8539 7 6 3.8951 2.9026 0.4119 8 6 3.4424 1.4408 0.3660 9 1 4.0311 0.9006 -0.3754 10 6 3.6386 0.8105 1.7208 11 8 2.7364 0.8221 2.5314 12 7 4.8165 0.2339 2.0316 13 6 4.9951 -0.3390 3.2642 14 1 4.1921 -0.3280 3.9863 15 6 6.2093 -0.9339 3.5845 16 7 6.3806 -1.4827 4.7661 17 14 7.5984 -0.9524 2.3358 18 1 8.4329 0.2641 2.5056 19 1 7.0306 -0.9755 0.9639 20 1 8.4362 -2.1605 2.5451 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 1.8933 -0.5139 -0.8900 25 1 1.8933 -0.5138 0.8899 26 1 0.7289 1.9945 -1.5433 27 1 2.3536 1.4937 -2.0727 28 1 1.6628 4.0244 -0.5105 29 1 2.1469 3.9420 -2.2222 30 1 3.3444 3.4298 1.1909 31 1 4.9627 2.9464 0.6269 32 1 5.5378 0.2243 1.3831 33 1 7.2281 -1.8983 4.9896 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000611238938.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:00:19 Heat of formation + Delta-G solvation = -93.902745 kcal Electronic energy + Delta-G solvation = -16659.007705 eV Core-core repulsion = 13912.107564 eV Total energy + Delta-G solvation = -2746.900141 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 228.126 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.37232 -39.47690 -37.09690 -35.97820 -33.88135 -32.60008 -31.81497 -27.95159 -27.08432 -25.24334 -23.06421 -22.04464 -21.18016 -20.16928 -18.09808 -17.53695 -17.38004 -16.73004 -16.20971 -15.96779 -15.60415 -15.23458 -15.10110 -14.92542 -14.43717 -14.28528 -13.76040 -13.21652 -13.00136 -12.86128 -12.70259 -12.47263 -12.35535 -12.03338 -11.87076 -11.55084 -11.50414 -10.87408 -10.34295 -10.29413 -9.36951 -8.45274 -6.06654 1.27524 1.31697 1.40953 1.79993 2.19010 2.49042 2.70214 3.09084 3.10408 3.78196 3.92432 3.94974 3.99937 4.14428 4.27240 4.38624 4.43872 4.53482 4.63116 4.68003 4.76634 4.94960 4.96627 5.09134 5.31197 5.47974 5.80659 5.90128 6.03090 6.08800 6.53646 6.81634 7.31993 7.86780 8.71881 Molecular weight = 228.13amu Principal moments of inertia in cm(-1) A = 0.031821 B = 0.008339 C = 0.007308 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 879.697969 B = 3357.107582 C = 3830.513818 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.047 3.953 3 N -0.530 5.530 4 C 0.017 3.983 5 C 0.056 3.944 6 O -0.387 6.387 7 C 0.083 3.917 8 C 0.048 3.952 9 H 0.072 0.928 10 C 0.460 3.540 11 O -0.599 6.599 12 N -0.586 5.586 13 C -0.329 4.329 14 H 0.059 0.941 15 C -0.009 4.009 16 N -0.929 5.929 17 Si 0.959 3.041 18 H -0.253 1.253 19 H -0.237 1.237 20 H -0.272 1.272 21 H 0.076 0.924 22 H 0.068 0.932 23 H 0.044 0.956 24 H 0.045 0.955 25 H 0.043 0.957 26 H 0.111 0.889 27 H 0.049 0.951 28 H 0.057 0.943 29 H 0.133 0.867 30 H 0.053 0.947 31 H 0.113 0.887 32 H 0.387 0.613 33 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.450 6.643 -17.263 19.024 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.080 4.080 3 N -0.257 5.257 4 C -0.110 4.110 5 C -0.020 4.020 6 O -0.305 6.305 7 C 0.005 3.995 8 C -0.064 4.064 9 H 0.090 0.910 10 C 0.247 3.753 11 O -0.483 6.483 12 N -0.227 5.227 13 C -0.458 4.458 14 H 0.077 0.923 15 C -0.208 4.208 16 N -0.569 5.569 17 Si 0.779 3.221 18 H -0.177 1.177 19 H -0.161 1.161 20 H -0.197 1.197 21 H 0.095 0.905 22 H 0.087 0.913 23 H 0.063 0.937 24 H 0.063 0.937 25 H 0.062 0.938 26 H 0.129 0.871 27 H 0.068 0.932 28 H 0.076 0.924 29 H 0.151 0.849 30 H 0.071 0.929 31 H 0.131 0.869 32 H 0.223 0.777 33 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -5.063 6.888 -16.325 18.428 hybrid contribution 1.108 -1.078 -0.139 1.552 sum -3.956 5.810 -16.464 17.902 Atomic orbital electron populations 1.21641 0.92832 1.02145 1.02298 1.22128 0.97983 0.88017 0.99901 1.61951 1.14398 1.18832 1.30515 1.23011 1.03641 0.95864 0.88454 1.22963 0.81540 0.95066 1.02451 1.87967 1.27564 1.78590 1.36390 1.22470 1.02014 0.88683 0.86313 1.22104 0.91596 0.99013 0.93730 0.91016 1.20280 0.82638 0.82587 0.89800 1.90554 1.42937 1.62406 1.52362 1.42101 1.13648 1.52320 1.14656 1.18998 1.00648 1.34663 0.91482 0.92300 1.26048 1.00431 0.95355 0.98995 1.69787 1.27041 1.37524 1.22519 0.85452 0.78109 0.79594 0.78988 1.17740 1.16098 1.19675 0.90531 0.91339 0.93681 0.93677 0.93815 0.87067 0.93239 0.92431 0.84941 0.92904 0.86873 0.77709 0.90979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.41 9.96 71.98 0.72 -2.69 16 2 C 0.05 1.51 5.36 86.31 0.46 1.97 16 3 N -0.53 -16.95 4.23 -874.38 -3.70 -20.65 16 4 C 0.02 0.39 5.46 86.31 0.47 0.86 16 5 C 0.06 1.18 7.01 72.01 0.50 1.68 16 6 O -0.39 -10.42 10.83 -148.98 -1.61 -12.03 16 7 C 0.08 2.57 6.27 72.01 0.45 3.02 16 8 C 0.05 1.68 2.38 44.18 0.10 1.78 16 9 H 0.07 2.25 8.14 -2.39 -0.02 2.24 16 10 C 0.46 21.46 5.69 87.66 0.50 21.96 16 11 O -0.60 -33.77 15.17 -3.06 -0.05 -33.81 16 12 N -0.59 -28.20 5.09 -306.98 -1.56 -29.76 16 13 C -0.33 -19.28 10.16 84.04 0.85 -18.42 16 14 H 0.06 4.09 7.39 -2.91 -0.02 4.07 16 15 C -0.01 -0.49 5.50 84.93 0.47 -0.02 16 16 N -0.93 -55.62 13.96 21.66 0.30 -55.32 16 17 Si 0.96 38.88 27.74 68.60 1.90 40.78 16 18 H -0.25 -9.67 7.11 99.48 0.71 -8.97 16 19 H -0.24 -8.31 6.52 99.48 0.65 -7.66 16 20 H -0.27 -10.87 7.11 99.48 0.71 -10.17 16 21 H 0.08 1.52 6.72 -2.39 -0.02 1.51 16 22 H 0.07 1.58 8.14 -2.38 -0.02 1.56 16 23 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 24 H 0.05 1.25 8.05 -2.39 -0.02 1.23 16 25 H 0.04 1.81 5.97 -2.39 -0.01 1.79 16 26 H 0.11 1.96 6.62 -2.39 -0.02 1.95 16 27 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 28 H 0.06 1.26 8.14 -2.38 -0.02 1.24 16 29 H 0.13 1.83 8.14 -2.39 -0.02 1.81 16 30 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 31 H 0.11 3.18 8.14 -2.39 -0.02 3.16 16 32 H 0.39 15.77 5.76 -92.71 -0.53 15.24 16 33 H 0.28 15.33 8.31 -92.71 -0.77 14.56 16 Total: -1.00 -73.29 269.49 0.33 -72.96 By element: Atomic # 1 Polarization: 27.16 SS G_CDS: 0.52 Total: 27.68 kcal Atomic # 6 Polarization: 5.62 SS G_CDS: 4.53 Total: 10.15 kcal Atomic # 7 Polarization: -100.76 SS G_CDS: -4.96 Total: -105.72 kcal Atomic # 8 Polarization: -44.18 SS G_CDS: -1.66 Total: -45.84 kcal Atomic # 14 Polarization: 38.88 SS G_CDS: 1.90 Total: 40.78 kcal Total: -73.29 0.33 -72.96 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611238938.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.945 kcal (2) G-P(sol) polarization free energy of solvation -73.288 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.331 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.957 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.903 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds