Wall clock time and date at job start Thu Apr 9 2020 12:00:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.37092 * 119.99918 * 2 1 4 4 H 1.07995 * 120.00160 * 173.95692 * 3 2 1 5 5 C 1.38956 * 120.00173 * 353.96309 * 3 2 1 6 6 N 1.31410 * 119.99833 * 5.14578 * 5 3 2 7 7 Si 1.86799 * 120.00134 * 185.14425 * 5 3 2 8 8 H 1.48500 * 109.46868 * 0.02562 * 7 5 3 9 9 H 1.48499 * 109.46769 * 119.99841 * 7 5 3 10 10 H 1.48492 * 109.47313 * 239.99754 * 7 5 3 11 11 C 1.34778 * 119.99837 * 180.02562 * 2 1 3 12 12 O 1.21299 * 119.99501 * 184.24893 * 11 2 1 13 13 C 1.50693 * 120.00417 * 4.25138 * 11 2 1 14 14 H 1.08998 * 109.54323 * 324.33934 * 13 11 2 15 15 C 1.53101 * 109.50566 * 84.44310 * 13 11 2 16 16 O 1.43017 * 109.25848 * 176.78390 * 15 13 11 17 17 C 1.43014 * 113.73916 * 301.33328 * 16 15 13 18 18 C 1.53098 * 109.25914 * 58.67137 * 17 16 15 19 19 N 1.47012 * 109.51113 * 204.22974 * 13 11 2 20 20 C 1.46900 * 110.99829 * 57.67045 * 19 13 11 21 21 H 1.09008 * 109.47043 * 184.31593 * 1 2 3 22 22 H 1.09002 * 109.47308 * 304.31255 * 1 2 3 23 23 H 1.08994 * 109.47517 * 64.31664 * 1 2 3 24 24 H 0.96999 * 120.00129 * 179.97438 * 6 5 3 25 25 H 1.08993 * 109.50775 * 296.72355 * 15 13 11 26 26 H 1.09002 * 109.50629 * 56.85238 * 15 13 11 27 27 H 1.09000 * 109.50696 * 178.60569 * 17 16 15 28 28 H 1.09004 * 109.50662 * 298.69259 * 17 16 15 29 29 H 1.09005 * 109.50879 * 183.22150 * 18 17 16 30 30 H 1.08994 * 109.50803 * 63.08199 * 18 17 16 31 31 H 1.08991 * 109.46808 * 54.78061 * 20 19 13 32 32 H 1.09005 * 109.46930 * 294.78011 * 20 19 13 33 33 H 1.09005 * 109.46722 * 174.78305 * 20 19 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1504 1.1873 0.0000 4 1 3.2259 1.1899 0.0985 5 6 1.4614 2.3873 -0.1266 6 7 0.1475 2.3918 -0.1445 7 14 2.4030 3.9942 -0.2711 8 1 3.8616 3.7190 -0.2254 9 1 2.0641 4.6523 -1.5585 10 1 2.0319 4.8884 0.8547 11 6 2.1388 -1.1672 -0.0005 12 8 3.3493 -1.1686 0.0773 13 6 1.3885 -2.4705 -0.0978 14 1 0.4468 -2.3904 0.4450 15 6 1.1054 -2.7887 -1.5684 16 8 0.4601 -4.0618 -1.6597 17 6 1.2234 -5.1354 -1.1030 18 6 1.5076 -4.8409 0.3723 19 7 2.2004 -3.5491 0.4841 20 6 2.5429 -3.2546 1.8819 21 1 -0.3633 -1.0248 0.0773 22 1 -0.3634 0.5793 0.8488 23 1 -0.3634 0.4453 -0.9261 24 1 -0.3335 3.2296 -0.2325 25 1 0.4562 -2.0206 -1.9886 26 1 2.0438 -2.8159 -2.1222 27 1 0.6595 -6.0645 -1.1865 28 1 2.1650 -5.2312 -1.6437 29 1 2.1375 -5.6286 0.7859 30 1 0.5678 -4.7987 0.9227 31 1 1.6309 -3.0600 2.4461 32 1 3.1885 -2.3771 1.9207 33 1 3.0636 -4.1082 2.3160 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000611289693.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:00:22 Heat of formation + Delta-G solvation = -45.075105 kcal Electronic energy + Delta-G solvation = -16935.688405 eV Core-core repulsion = 14190.905590 eV Total energy + Delta-G solvation = -2744.782815 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 228.126 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.80367 -37.81650 -35.41087 -34.46664 -31.87255 -30.76529 -28.47704 -26.41502 -24.88449 -23.83184 -23.59882 -20.78961 -18.65954 -16.97907 -16.42970 -16.10640 -15.90749 -14.94330 -14.69158 -14.58613 -13.88064 -13.60833 -13.40914 -13.24417 -12.54008 -12.14363 -11.99264 -11.66461 -11.37871 -11.19891 -11.00842 -10.97058 -10.71395 -10.38338 -10.33470 -10.15213 -9.51746 -9.05183 -8.36534 -7.92934 -7.85202 -6.25826 -3.82984 3.12767 3.23893 3.31210 3.74414 3.96217 4.06818 4.21523 4.88054 5.08254 5.11908 5.30258 5.32413 5.41573 5.51529 5.74447 5.75289 5.84859 5.86298 5.91921 6.03453 6.22463 6.41374 6.47770 7.06421 7.18902 7.29699 7.33401 7.38580 7.54502 8.06119 8.47464 9.17709 9.41825 9.96847 10.68003 Molecular weight = 228.13amu Principal moments of inertia in cm(-1) A = 0.045067 B = 0.007810 C = 0.007284 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 621.153144 B = 3584.291394 C = 3843.035170 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.111 3.889 2 N -0.447 5.447 3 C -0.299 4.299 4 H 0.105 0.895 5 C 0.026 3.974 6 N -0.888 5.888 7 Si 0.931 3.069 8 H -0.268 1.268 9 H -0.280 1.280 10 H -0.281 1.281 11 C 0.445 3.555 12 O -0.575 6.575 13 C 0.040 3.960 14 H 0.061 0.939 15 C 0.079 3.921 16 O -0.386 6.386 17 C 0.062 3.938 18 C 0.017 3.983 19 N -0.517 5.517 20 C 0.025 3.975 21 H 0.023 0.977 22 H 0.073 0.927 23 H 0.068 0.932 24 H 0.265 0.735 25 H 0.103 0.897 26 H 0.064 0.936 27 H 0.094 0.906 28 H 0.059 0.941 29 H 0.084 0.916 30 H 0.038 0.962 31 H 0.018 0.982 32 H 0.089 0.911 33 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.954 -9.913 0.319 10.109 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.033 4.033 2 N -0.166 5.166 3 C -0.426 4.426 4 H 0.123 0.877 5 C -0.176 4.176 6 N -0.530 5.530 7 Si 0.758 3.242 8 H -0.192 1.192 9 H -0.206 1.206 10 H -0.208 1.208 11 C 0.231 3.769 12 O -0.459 6.459 13 C -0.072 4.072 14 H 0.079 0.921 15 C 0.001 3.999 16 O -0.304 6.304 17 C -0.015 4.015 18 C -0.111 4.111 19 N -0.243 5.243 20 C -0.123 4.123 21 H 0.041 0.959 22 H 0.092 0.908 23 H 0.087 0.913 24 H 0.076 0.924 25 H 0.121 0.879 26 H 0.083 0.917 27 H 0.112 0.888 28 H 0.077 0.923 29 H 0.102 0.898 30 H 0.056 0.944 31 H 0.037 0.963 32 H 0.108 0.892 33 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -1.257 -9.786 -0.006 9.867 hybrid contribution -0.388 0.963 0.636 1.217 sum -1.645 -8.823 0.630 8.997 Atomic orbital electron populations 1.21896 0.80361 0.96351 1.04674 1.43768 1.06014 1.04783 1.62057 1.19863 0.93581 0.82049 1.47137 0.87680 1.25332 0.95801 0.99737 0.96715 1.70170 1.05852 1.27097 1.49865 0.85772 0.79737 0.80887 0.77815 1.19217 1.20615 1.20752 1.19375 0.87930 0.83779 0.85768 1.90508 1.13663 1.86432 1.55315 1.22261 0.95343 0.92182 0.97408 0.92097 1.22571 0.98529 0.84924 0.93841 1.87958 1.45370 1.16327 1.80784 1.22644 0.96402 0.90134 0.92294 1.22828 0.97567 0.92905 0.97818 1.61894 1.42679 1.00792 1.18901 1.22442 0.99969 1.03062 0.86782 0.95904 0.90841 0.91329 0.92398 0.87940 0.91748 0.88784 0.92295 0.89806 0.94394 0.96321 0.89209 0.91977 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 2.53 8.63 59.85 0.52 3.05 16 2 N -0.45 -11.51 3.03 -122.19 -0.37 -11.88 16 3 C -0.30 -8.30 9.56 -14.93 -0.14 -8.45 16 4 H 0.11 3.07 7.18 -52.49 -0.38 2.69 16 5 C 0.03 0.67 5.46 -17.47 -0.10 0.58 16 6 N -0.89 -23.21 9.45 55.50 0.52 -22.69 16 7 Si 0.93 20.76 29.56 -169.99 -5.02 15.74 16 8 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 9 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 10 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 11 C 0.44 10.93 5.98 -10.99 -0.07 10.86 16 12 O -0.58 -15.95 14.68 5.54 0.08 -15.87 16 13 C 0.04 0.80 1.56 -68.75 -0.11 0.69 16 14 H 0.06 1.20 6.09 -51.93 -0.32 0.88 16 15 C 0.08 1.44 6.27 37.21 0.23 1.67 16 16 O -0.39 -6.41 10.83 -35.23 -0.38 -6.79 16 17 C 0.06 0.85 7.01 37.21 0.26 1.11 16 18 C 0.02 0.25 5.65 -3.71 -0.02 0.22 16 19 N -0.52 -9.47 4.53 -235.97 -1.07 -10.54 16 20 C 0.03 0.44 9.12 60.06 0.55 0.99 16 21 H 0.02 0.45 5.27 -51.92 -0.27 0.18 16 22 H 0.07 1.79 6.99 -51.93 -0.36 1.42 16 23 H 0.07 1.63 7.11 -51.93 -0.37 1.27 16 24 H 0.27 6.57 8.31 -40.82 -0.34 6.23 16 25 H 0.10 1.83 8.02 -51.93 -0.42 1.42 16 26 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 27 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 28 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 29 H 0.08 1.00 8.10 -51.93 -0.42 0.58 16 30 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.02 0.31 8.13 -51.93 -0.42 -0.11 16 32 H 0.09 1.87 6.23 -51.93 -0.32 1.54 16 33 H 0.06 0.90 8.06 -51.93 -0.42 0.48 16 LS Contribution 264.63 15.07 3.99 3.99 Total: -1.00 -30.41 264.63 -5.65 -36.06 By element: Atomic # 1 Polarization: 5.78 SS G_CDS: -4.52 Total: 1.26 kcal Atomic # 6 Polarization: 9.61 SS G_CDS: 1.13 Total: 10.73 kcal Atomic # 7 Polarization: -44.19 SS G_CDS: -0.91 Total: -45.11 kcal Atomic # 8 Polarization: -22.36 SS G_CDS: -0.30 Total: -22.66 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.02 Total: 15.74 kcal Total LS contribution 3.99 Total: 3.99 kcal Total: -30.41 -5.65 -36.06 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611289693.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.019 kcal (2) G-P(sol) polarization free energy of solvation -30.407 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.427 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.648 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.056 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.075 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds