Wall clock time and date at job start Thu Apr 9 2020 12:00:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.37092 * 119.99918 * 2 1 4 4 H 1.07995 * 120.00160 * 173.95692 * 3 2 1 5 5 C 1.38956 * 120.00173 * 353.96309 * 3 2 1 6 6 N 1.31410 * 119.99833 * 5.14578 * 5 3 2 7 7 Si 1.86799 * 120.00134 * 185.14425 * 5 3 2 8 8 H 1.48500 * 109.46868 * 0.02562 * 7 5 3 9 9 H 1.48499 * 109.46769 * 119.99841 * 7 5 3 10 10 H 1.48492 * 109.47313 * 239.99754 * 7 5 3 11 11 C 1.34778 * 119.99837 * 180.02562 * 2 1 3 12 12 O 1.21299 * 119.99501 * 184.24893 * 11 2 1 13 13 C 1.50693 * 120.00417 * 4.25138 * 11 2 1 14 14 H 1.08998 * 109.54323 * 324.33934 * 13 11 2 15 15 C 1.53101 * 109.50566 * 84.44310 * 13 11 2 16 16 O 1.43017 * 109.25848 * 176.78390 * 15 13 11 17 17 C 1.43014 * 113.73916 * 301.33328 * 16 15 13 18 18 C 1.53098 * 109.25914 * 58.67137 * 17 16 15 19 19 N 1.47012 * 109.51113 * 204.22974 * 13 11 2 20 20 C 1.46900 * 110.99829 * 57.67045 * 19 13 11 21 21 H 1.09008 * 109.47043 * 184.31593 * 1 2 3 22 22 H 1.09002 * 109.47308 * 304.31255 * 1 2 3 23 23 H 1.08994 * 109.47517 * 64.31664 * 1 2 3 24 24 H 0.96999 * 120.00129 * 179.97438 * 6 5 3 25 25 H 1.08993 * 109.50775 * 296.72355 * 15 13 11 26 26 H 1.09002 * 109.50629 * 56.85238 * 15 13 11 27 27 H 1.09000 * 109.50696 * 178.60569 * 17 16 15 28 28 H 1.09004 * 109.50662 * 298.69259 * 17 16 15 29 29 H 1.09005 * 109.50879 * 183.22150 * 18 17 16 30 30 H 1.08994 * 109.50803 * 63.08199 * 18 17 16 31 31 H 1.08991 * 109.46808 * 54.78061 * 20 19 13 32 32 H 1.09005 * 109.46930 * 294.78011 * 20 19 13 33 33 H 1.09005 * 109.46722 * 174.78305 * 20 19 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1504 1.1873 0.0000 4 1 3.2259 1.1899 0.0985 5 6 1.4614 2.3873 -0.1266 6 7 0.1475 2.3918 -0.1445 7 14 2.4030 3.9942 -0.2711 8 1 3.8616 3.7190 -0.2254 9 1 2.0641 4.6523 -1.5585 10 1 2.0319 4.8884 0.8547 11 6 2.1388 -1.1672 -0.0005 12 8 3.3493 -1.1686 0.0773 13 6 1.3885 -2.4705 -0.0978 14 1 0.4468 -2.3904 0.4450 15 6 1.1054 -2.7887 -1.5684 16 8 0.4601 -4.0618 -1.6597 17 6 1.2234 -5.1354 -1.1030 18 6 1.5076 -4.8409 0.3723 19 7 2.2004 -3.5491 0.4841 20 6 2.5429 -3.2546 1.8819 21 1 -0.3633 -1.0248 0.0773 22 1 -0.3634 0.5793 0.8488 23 1 -0.3634 0.4453 -0.9261 24 1 -0.3335 3.2296 -0.2325 25 1 0.4562 -2.0206 -1.9886 26 1 2.0438 -2.8159 -2.1222 27 1 0.6595 -6.0645 -1.1865 28 1 2.1650 -5.2312 -1.6437 29 1 2.1375 -5.6286 0.7859 30 1 0.5678 -4.7987 0.9227 31 1 1.6309 -3.0600 2.4461 32 1 3.1885 -2.3771 1.9207 33 1 3.0636 -4.1082 2.3160 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000611289693.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:00:22 Heat of formation + Delta-G solvation = -67.969306 kcal Electronic energy + Delta-G solvation = -16936.681172 eV Core-core repulsion = 14190.905590 eV Total energy + Delta-G solvation = -2745.775582 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 228.126 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.37030 -39.49073 -37.02027 -36.25071 -33.79543 -32.26539 -29.83032 -28.33423 -26.66619 -25.25454 -25.13430 -22.23495 -20.36323 -18.99074 -18.25010 -17.46106 -17.31289 -16.51838 -16.28729 -16.06515 -15.57451 -15.42510 -14.90232 -14.79563 -14.07307 -13.95036 -13.52843 -13.20685 -13.01276 -12.79369 -12.76263 -12.58567 -12.33799 -12.13489 -12.03597 -11.66552 -11.05022 -10.86873 -10.23804 -9.90057 -9.34253 -8.26259 -5.93216 1.34044 1.40392 1.54299 1.91292 2.21578 2.66388 2.74345 3.08227 3.20664 3.82222 3.88049 3.93073 3.99600 4.24440 4.28249 4.47190 4.51456 4.59039 4.61870 4.71188 4.85504 4.95836 5.03208 5.15142 5.42631 5.46078 5.74665 5.97765 6.02682 6.12200 6.46226 7.14595 7.44078 7.99732 8.65066 Molecular weight = 228.13amu Principal moments of inertia in cm(-1) A = 0.045067 B = 0.007810 C = 0.007284 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 621.153144 B = 3584.291394 C = 3843.035170 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.125 3.875 2 N -0.462 5.462 3 C -0.340 4.340 4 H 0.078 0.922 5 C -0.004 4.004 6 N -0.897 5.897 7 Si 0.994 3.006 8 H -0.276 1.276 9 H -0.269 1.269 10 H -0.270 1.270 11 C 0.440 3.560 12 O -0.615 6.615 13 C 0.051 3.949 14 H 0.067 0.933 15 C 0.088 3.912 16 O -0.389 6.389 17 C 0.055 3.945 18 C 0.017 3.983 19 N -0.537 5.537 20 C 0.030 3.970 21 H 0.055 0.945 22 H 0.056 0.944 23 H 0.057 0.943 24 H 0.272 0.728 25 H 0.102 0.898 26 H 0.051 0.949 27 H 0.134 0.866 28 H 0.058 0.942 29 H 0.113 0.887 30 H 0.046 0.954 31 H 0.025 0.975 32 H 0.047 0.953 33 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.896 -11.090 0.288 11.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.018 4.018 2 N -0.181 5.181 3 C -0.467 4.467 4 H 0.096 0.904 5 C -0.205 4.205 6 N -0.537 5.537 7 Si 0.817 3.183 8 H -0.201 1.201 9 H -0.194 1.194 10 H -0.195 1.195 11 C 0.229 3.771 12 O -0.502 6.502 13 C -0.061 4.061 14 H 0.084 0.916 15 C 0.010 3.990 16 O -0.307 6.307 17 C -0.021 4.021 18 C -0.110 4.110 19 N -0.263 5.263 20 C -0.118 4.118 21 H 0.073 0.927 22 H 0.075 0.925 23 H 0.076 0.924 24 H 0.083 0.917 25 H 0.120 0.880 26 H 0.069 0.931 27 H 0.152 0.848 28 H 0.077 0.923 29 H 0.131 0.869 30 H 0.065 0.935 31 H 0.043 0.957 32 H 0.066 0.934 33 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -2.240 -10.985 -0.035 11.211 hybrid contribution -0.089 1.246 0.669 1.417 sum -2.328 -9.739 0.634 10.034 Atomic orbital electron populations 1.21738 0.78866 0.97958 1.03226 1.43993 1.07027 1.04782 1.62266 1.19781 0.92880 0.83876 1.50197 0.90444 1.26068 0.96791 1.02139 0.95500 1.70255 1.06498 1.28243 1.48693 0.84865 0.77934 0.77019 0.78455 1.20088 1.19380 1.19487 1.20207 0.87790 0.85037 0.84083 1.90469 1.15670 1.87319 1.56699 1.22092 0.94775 0.90342 0.98885 0.91553 1.22359 0.98068 0.86247 0.92325 1.87963 1.45669 1.16006 1.81065 1.22984 0.97015 0.90453 0.91645 1.22997 0.98218 0.91192 0.98578 1.61881 1.43447 1.01842 1.19149 1.22356 0.99774 1.02714 0.86966 0.92677 0.92503 0.92449 0.91725 0.87962 0.93064 0.84794 0.92322 0.86872 0.93527 0.95686 0.93402 0.88737 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 5.74 8.63 127.77 1.10 6.84 16 2 N -0.46 -24.37 3.03 -658.89 -1.99 -26.36 16 3 C -0.34 -19.52 9.56 84.04 0.80 -18.72 16 4 H 0.08 4.78 7.18 -2.91 -0.02 4.76 16 5 C 0.00 -0.22 5.46 84.93 0.46 0.24 16 6 N -0.90 -46.70 9.45 21.66 0.20 -46.50 16 7 Si 0.99 42.68 29.56 68.60 2.03 44.70 16 8 H -0.28 -12.14 7.11 99.48 0.71 -11.43 16 9 H -0.27 -11.02 7.11 99.48 0.71 -10.31 16 10 H -0.27 -11.04 7.11 99.48 0.71 -10.33 16 11 C 0.44 22.16 5.98 87.65 0.52 22.68 16 12 O -0.62 -35.51 14.68 -3.09 -0.05 -35.55 16 13 C 0.05 2.01 1.56 44.18 0.07 2.08 16 14 H 0.07 2.51 6.09 -2.39 -0.01 2.50 16 15 C 0.09 3.13 6.27 72.02 0.45 3.59 16 16 O -0.39 -11.91 10.83 -148.98 -1.61 -13.52 16 17 C 0.06 1.30 7.01 72.01 0.50 1.81 16 18 C 0.02 0.43 5.65 86.31 0.49 0.92 16 19 N -0.54 -18.86 4.53 -900.49 -4.07 -22.94 16 20 C 0.03 1.01 9.12 127.69 1.16 2.18 16 21 H 0.05 2.13 5.27 -2.38 -0.01 2.12 16 22 H 0.06 2.78 6.99 -2.39 -0.02 2.76 16 23 H 0.06 2.74 7.11 -2.39 -0.02 2.72 16 24 H 0.27 13.24 8.31 -92.71 -0.77 12.47 16 25 H 0.10 3.59 8.02 -2.39 -0.02 3.57 16 26 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 27 H 0.13 2.13 8.14 -2.39 -0.02 2.12 16 28 H 0.06 1.41 8.14 -2.38 -0.02 1.39 16 29 H 0.11 2.18 8.10 -2.38 -0.02 2.16 16 30 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 31 H 0.02 0.80 8.13 -2.39 -0.02 0.78 16 32 H 0.05 2.03 6.23 -2.38 -0.01 2.02 16 33 H 0.09 2.53 8.06 -2.38 -0.02 2.51 16 Total: -1.00 -66.91 264.63 1.18 -65.74 By element: Atomic # 1 Polarization: 11.71 SS G_CDS: 1.10 Total: 12.81 kcal Atomic # 6 Polarization: 16.05 SS G_CDS: 5.57 Total: 21.62 kcal Atomic # 7 Polarization: -89.93 SS G_CDS: -5.86 Total: -95.80 kcal Atomic # 8 Polarization: -47.42 SS G_CDS: -1.66 Total: -49.07 kcal Atomic # 14 Polarization: 42.68 SS G_CDS: 2.03 Total: 44.70 kcal Total: -66.91 1.18 -65.74 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611289693.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.231 kcal (2) G-P(sol) polarization free energy of solvation -66.914 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.144 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.175 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.739 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.969 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds