Wall clock time and date at job start Thu Apr 9 2020 12:00:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 109.47030 * 2 1 4 4 C 1.53004 * 109.46999 * 119.99597 * 2 1 3 5 5 N 1.46904 * 109.46830 * 175.00436 * 4 2 1 6 6 C 1.47016 * 111.00121 * 46.31860 * 5 4 2 7 7 C 1.53099 * 109.25687 * 182.35279 * 6 5 4 8 8 O 1.43014 * 109.28886 * 303.21887 * 7 6 5 9 9 C 1.43014 * 113.74109 * 58.65142 * 8 7 6 10 10 C 1.47013 * 110.99968 * 170.00537 * 5 4 2 11 11 N 1.46504 * 109.47544 * 239.99981 * 2 1 3 12 12 C 1.46503 * 119.99652 * 300.00150 * 11 2 1 13 13 C 1.36929 * 120.00277 * 119.99537 * 11 2 1 14 14 H 1.08001 * 119.99983 * 327.26919 * 13 11 2 15 15 C 1.38814 * 119.99993 * 147.26096 * 13 11 2 16 16 N 1.31624 * 119.99731 * 153.35371 * 15 13 11 17 17 Si 1.86793 * 119.99892 * 333.35705 * 15 13 11 18 18 H 1.48500 * 109.47265 * 95.64272 * 17 15 13 19 19 H 1.48504 * 109.47192 * 215.63929 * 17 15 13 20 20 H 1.48500 * 109.47473 * 335.63774 * 17 15 13 21 21 H 1.08997 * 109.47347 * 60.00432 * 1 2 3 22 22 H 1.08999 * 109.47030 * 180.02562 * 1 2 3 23 23 H 1.09001 * 109.47588 * 300.00381 * 1 2 3 24 24 H 1.08997 * 109.46648 * 55.00659 * 4 2 1 25 25 H 1.08994 * 109.47159 * 295.00142 * 4 2 1 26 26 H 1.08999 * 109.47198 * 62.43688 * 6 5 4 27 27 H 1.09001 * 109.54313 * 302.30535 * 6 5 4 28 28 H 1.08996 * 109.50446 * 183.26449 * 7 6 5 29 29 H 1.08997 * 109.50564 * 63.17073 * 7 6 5 30 30 H 1.08993 * 109.50947 * 61.25953 * 9 8 7 31 31 H 1.08998 * 109.50551 * 181.35079 * 9 8 7 32 32 H 1.09000 * 109.51137 * 57.66485 * 10 5 4 33 33 H 1.09007 * 109.53741 * 297.56091 * 10 5 4 34 34 H 1.09000 * 109.47209 * 95.12544 * 12 11 2 35 35 H 1.08997 * 109.46877 * 215.13025 * 12 11 2 36 36 H 1.09004 * 109.47012 * 335.12790 * 12 11 2 37 37 H 0.97006 * 119.99481 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 3.5040 -0.8265 1.1905 6 6 4.1095 0.4564 0.8045 7 6 5.6273 0.2868 0.6984 8 8 6.1364 -0.2005 1.9429 9 6 5.5686 -1.4490 2.3480 10 6 4.0503 -1.2968 2.4718 11 7 2.0184 -0.6906 -1.1962 12 6 1.6645 -2.0932 -1.4280 13 6 2.8056 -0.0252 -2.0975 14 1 2.6614 1.0323 -2.2631 15 6 3.7891 -0.7096 -2.7983 16 7 4.1785 -0.2763 -3.9786 17 14 4.5598 -2.2457 -2.0664 18 1 3.8652 -3.4476 -2.5937 19 1 5.9970 -2.3026 -2.4359 20 1 4.4302 -2.2080 -0.5875 21 1 -0.3634 0.5137 -0.8900 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3634 0.5139 0.8899 24 1 1.6054 -1.7197 1.2952 25 1 1.7516 -0.1582 2.1370 26 1 3.8791 1.2085 1.5590 27 1 3.7104 0.7726 -0.1593 28 1 6.0859 1.2486 0.4691 29 1 5.8595 -0.4253 -0.0936 30 1 5.7984 -2.2118 1.6041 31 1 5.9853 -1.7428 3.3113 32 1 3.6073 -2.2600 2.7248 33 1 3.8196 -0.5734 3.2540 34 1 0.7892 -2.1449 -2.0755 35 1 2.5003 -2.6047 -1.9053 36 1 1.4407 -2.5736 -0.4754 37 1 4.8655 -0.7549 -4.4685 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000611370960.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:00:26 Heat of formation + Delta-G solvation = 1.072717 kcal Electronic energy + Delta-G solvation = -17811.908290 eV Core-core repulsion = 15204.959688 eV Total energy + Delta-G solvation = -2606.948601 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 228.158 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.24669 -36.98383 -34.46782 -32.14086 -30.73408 -30.07981 -27.49012 -26.11332 -24.11405 -23.47406 -22.80986 -20.16558 -18.78584 -16.84408 -16.13272 -15.69469 -15.47908 -14.80752 -14.56359 -14.41039 -13.93916 -13.42096 -12.93734 -12.46092 -12.24648 -12.18173 -12.04826 -11.86483 -11.57323 -11.06110 -10.96441 -10.78994 -10.64188 -10.31990 -10.04769 -9.92695 -9.71691 -9.37677 -9.19572 -8.35509 -7.60786 -6.74554 -5.92099 -3.24490 3.45789 3.62926 3.87768 4.18896 4.36217 4.70764 5.08721 5.21599 5.37363 5.39499 5.47520 5.55371 5.64093 5.76866 5.89529 5.93047 5.97467 6.04455 6.08180 6.16667 6.18531 6.31386 6.43591 6.47048 6.61871 6.72630 6.81315 6.87332 6.90719 7.47578 7.58605 7.66386 8.09969 8.40176 9.06854 9.82543 10.23485 11.22666 Molecular weight = 228.16amu Principal moments of inertia in cm(-1) A = 0.021317 B = 0.015211 C = 0.011038 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1313.183998 B = 1840.377412 C = 2536.159907 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.166 3.834 3 H 0.070 0.930 4 C 0.042 3.958 5 N -0.509 5.509 6 C 0.013 3.987 7 C 0.064 3.936 8 O -0.395 6.395 9 C 0.066 3.934 10 C 0.018 3.982 11 N -0.591 5.591 12 C 0.123 3.877 13 C -0.264 4.264 14 H 0.074 0.926 15 C 0.038 3.962 16 N -0.901 5.901 17 Si 0.850 3.150 18 H -0.299 1.299 19 H -0.314 1.314 20 H -0.214 1.214 21 H 0.057 0.943 22 H 0.047 0.953 23 H 0.042 0.958 24 H 0.065 0.935 25 H 0.020 0.980 26 H 0.022 0.978 27 H 0.129 0.871 28 H 0.092 0.908 29 H 0.060 0.940 30 H 0.055 0.945 31 H 0.088 0.912 32 H 0.075 0.925 33 H 0.031 0.969 34 H 0.009 0.991 35 H 0.037 0.963 36 H 0.031 0.969 37 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.931 -1.479 12.104 12.346 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.058 3.942 3 H 0.088 0.912 4 C -0.088 4.088 5 N -0.233 5.233 6 C -0.114 4.114 7 C -0.012 4.012 8 O -0.314 6.314 9 C -0.011 4.011 10 C -0.110 4.110 11 N -0.314 5.314 12 C -0.022 4.022 13 C -0.392 4.392 14 H 0.092 0.908 15 C -0.162 4.162 16 N -0.542 5.542 17 Si 0.680 3.320 18 H -0.228 1.228 19 H -0.244 1.244 20 H -0.136 1.136 21 H 0.076 0.924 22 H 0.066 0.934 23 H 0.061 0.939 24 H 0.084 0.916 25 H 0.038 0.962 26 H 0.040 0.960 27 H 0.146 0.854 28 H 0.110 0.890 29 H 0.079 0.921 30 H 0.073 0.927 31 H 0.106 0.894 32 H 0.093 0.907 33 H 0.050 0.950 34 H 0.027 0.973 35 H 0.055 0.945 36 H 0.049 0.951 37 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -1.561 -1.727 11.716 11.945 hybrid contribution 0.101 -0.614 0.679 0.921 sum -1.460 -2.342 12.394 12.698 Atomic orbital electron populations 1.22198 0.97931 1.01050 1.00562 1.20597 0.91860 0.96015 0.85762 0.91223 1.22725 0.87482 1.00609 0.97980 1.62163 1.05149 1.28886 1.27123 1.23061 0.95109 0.89590 1.03665 1.22707 0.93426 0.99600 0.85487 1.87885 1.65582 1.37852 1.40045 1.22557 0.92020 0.86771 0.99798 1.22739 0.96319 1.00411 0.91562 1.43914 1.58160 1.08622 1.20701 1.21136 0.97681 0.86089 0.97261 1.18610 1.10725 0.95288 1.14585 0.90806 1.25308 0.97034 0.98029 0.95856 1.69950 1.31509 1.41905 1.10793 0.87442 0.76707 0.83019 0.84822 1.22828 1.24367 1.13649 0.92399 0.93379 0.93898 0.91620 0.96207 0.95996 0.85354 0.88981 0.92142 0.92664 0.89435 0.90696 0.95048 0.97280 0.94513 0.95079 0.93008 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.54 9.19 37.16 0.34 -2.20 16 2 C 0.17 3.09 2.24 -67.93 -0.15 2.94 16 3 H 0.07 1.35 6.40 -51.93 -0.33 1.02 16 4 C 0.04 0.71 4.54 -3.82 -0.02 0.69 16 5 N -0.51 -9.28 3.29 -234.30 -0.77 -10.05 16 6 C 0.01 0.25 4.90 -3.71 -0.02 0.23 16 7 C 0.06 1.20 7.01 37.21 0.26 1.46 16 8 O -0.39 -7.06 10.83 -35.23 -0.38 -7.44 16 9 C 0.07 1.02 7.01 37.21 0.26 1.29 16 10 C 0.02 0.29 5.63 -3.71 -0.02 0.26 16 11 N -0.59 -13.31 2.07 -173.48 -0.36 -13.67 16 12 C 0.12 2.69 8.76 59.85 0.52 3.21 16 13 C -0.26 -7.00 7.78 -15.06 -0.12 -7.12 16 14 H 0.07 2.12 8.06 -52.49 -0.42 1.70 16 15 C 0.04 1.08 5.28 -17.43 -0.09 0.99 16 16 N -0.90 -27.27 13.97 55.49 0.78 -26.50 16 17 Si 0.85 21.55 23.69 -169.99 -4.03 17.52 16 18 H -0.30 -7.76 6.63 56.52 0.37 -7.39 16 19 H -0.31 -8.38 7.11 56.52 0.40 -7.98 16 20 H -0.21 -5.07 5.66 56.52 0.32 -4.75 16 21 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 22 H 0.05 0.75 7.67 -51.93 -0.40 0.35 16 23 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 24 H 0.07 1.10 6.86 -51.93 -0.36 0.74 16 25 H 0.02 0.31 8.08 -51.93 -0.42 -0.11 16 26 H 0.02 0.39 8.14 -51.93 -0.42 -0.04 16 27 H 0.13 2.73 3.90 -51.93 -0.20 2.53 16 28 H 0.09 1.55 8.14 -51.93 -0.42 1.13 16 29 H 0.06 1.26 6.51 -51.93 -0.34 0.93 16 30 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 31 H 0.09 1.10 8.14 -51.93 -0.42 0.67 16 32 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 33 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.01 0.20 8.14 -51.93 -0.42 -0.23 16 35 H 0.04 0.89 2.78 -51.93 -0.14 0.74 16 36 H 0.03 0.60 6.53 -51.93 -0.34 0.26 16 37 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 LS Contribution 273.98 15.07 4.13 4.13 Total: -1.00 -29.85 273.98 -5.67 -35.52 By element: Atomic # 1 Polarization: 4.74 SS G_CDS: -6.00 Total: -1.26 kcal Atomic # 6 Polarization: 0.78 SS G_CDS: 0.97 Total: 1.75 kcal Atomic # 7 Polarization: -49.86 SS G_CDS: -0.36 Total: -50.22 kcal Atomic # 8 Polarization: -7.06 SS G_CDS: -0.38 Total: -7.44 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -4.03 Total: 17.52 kcal Total LS contribution 4.13 Total: 4.13 kcal Total: -29.85 -5.67 -35.52 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611370960.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.593 kcal (2) G-P(sol) polarization free energy of solvation -29.852 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.742 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.669 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.520 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.073 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds