Wall clock time and date at job start Thu Apr 9 2020 12:00:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 109.47030 * 2 1 4 4 C 1.53004 * 109.46999 * 119.99597 * 2 1 3 5 5 N 1.46904 * 109.46830 * 175.00436 * 4 2 1 6 6 C 1.47016 * 111.00121 * 46.31860 * 5 4 2 7 7 C 1.53099 * 109.25687 * 182.35279 * 6 5 4 8 8 O 1.43014 * 109.28886 * 303.21887 * 7 6 5 9 9 C 1.43014 * 113.74109 * 58.65142 * 8 7 6 10 10 C 1.47013 * 110.99968 * 170.00537 * 5 4 2 11 11 N 1.46504 * 109.47544 * 239.99981 * 2 1 3 12 12 C 1.46503 * 119.99652 * 300.00150 * 11 2 1 13 13 C 1.36929 * 120.00277 * 119.99537 * 11 2 1 14 14 H 1.08001 * 119.99983 * 327.26919 * 13 11 2 15 15 C 1.38814 * 119.99993 * 147.26096 * 13 11 2 16 16 N 1.31624 * 119.99731 * 153.35371 * 15 13 11 17 17 Si 1.86793 * 119.99892 * 333.35705 * 15 13 11 18 18 H 1.48500 * 109.47265 * 95.64272 * 17 15 13 19 19 H 1.48504 * 109.47192 * 215.63929 * 17 15 13 20 20 H 1.48500 * 109.47473 * 335.63774 * 17 15 13 21 21 H 1.08997 * 109.47347 * 60.00432 * 1 2 3 22 22 H 1.08999 * 109.47030 * 180.02562 * 1 2 3 23 23 H 1.09001 * 109.47588 * 300.00381 * 1 2 3 24 24 H 1.08997 * 109.46648 * 55.00659 * 4 2 1 25 25 H 1.08994 * 109.47159 * 295.00142 * 4 2 1 26 26 H 1.08999 * 109.47198 * 62.43688 * 6 5 4 27 27 H 1.09001 * 109.54313 * 302.30535 * 6 5 4 28 28 H 1.08996 * 109.50446 * 183.26449 * 7 6 5 29 29 H 1.08997 * 109.50564 * 63.17073 * 7 6 5 30 30 H 1.08993 * 109.50947 * 61.25953 * 9 8 7 31 31 H 1.08998 * 109.50551 * 181.35079 * 9 8 7 32 32 H 1.09000 * 109.51137 * 57.66485 * 10 5 4 33 33 H 1.09007 * 109.53741 * 297.56091 * 10 5 4 34 34 H 1.09000 * 109.47209 * 95.12544 * 12 11 2 35 35 H 1.08997 * 109.46877 * 215.13025 * 12 11 2 36 36 H 1.09004 * 109.47012 * 335.12790 * 12 11 2 37 37 H 0.97006 * 119.99481 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 3.5040 -0.8265 1.1905 6 6 4.1095 0.4564 0.8045 7 6 5.6273 0.2868 0.6984 8 8 6.1364 -0.2005 1.9429 9 6 5.5686 -1.4490 2.3480 10 6 4.0503 -1.2968 2.4718 11 7 2.0184 -0.6906 -1.1962 12 6 1.6645 -2.0932 -1.4280 13 6 2.8056 -0.0252 -2.0975 14 1 2.6614 1.0323 -2.2631 15 6 3.7891 -0.7096 -2.7983 16 7 4.1785 -0.2763 -3.9786 17 14 4.5598 -2.2457 -2.0664 18 1 3.8652 -3.4476 -2.5937 19 1 5.9970 -2.3026 -2.4359 20 1 4.4302 -2.2080 -0.5875 21 1 -0.3634 0.5137 -0.8900 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3634 0.5139 0.8899 24 1 1.6054 -1.7197 1.2952 25 1 1.7516 -0.1582 2.1370 26 1 3.8791 1.2085 1.5590 27 1 3.7104 0.7726 -0.1593 28 1 6.0859 1.2486 0.4691 29 1 5.8595 -0.4253 -0.0936 30 1 5.7984 -2.2118 1.6041 31 1 5.9853 -1.7428 3.3113 32 1 3.6073 -2.2600 2.7248 33 1 3.8196 -0.5734 3.2540 34 1 0.7892 -2.1449 -2.0755 35 1 2.5003 -2.6047 -1.9053 36 1 1.4407 -2.5736 -0.4754 37 1 4.8655 -0.7549 -4.4685 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000611370960.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:00:25 Heat of formation + Delta-G solvation = -20.323485 kcal Electronic energy + Delta-G solvation = -17812.836099 eV Core-core repulsion = 15204.959688 eV Total energy + Delta-G solvation = -2607.876410 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 228.158 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.62492 -38.54162 -36.03164 -34.03041 -32.08327 -31.80183 -28.83348 -27.95725 -25.60120 -24.84712 -24.55061 -21.53218 -20.35577 -18.81889 -17.49605 -17.42089 -17.01521 -16.30039 -15.93612 -15.86477 -15.48218 -14.97721 -14.55874 -14.28423 -14.06527 -13.79940 -13.66606 -13.21473 -12.90059 -12.44067 -12.42771 -12.33242 -12.23258 -12.02570 -11.92792 -11.48867 -11.43821 -11.16328 -10.58428 -10.46429 -8.97577 -8.65473 -8.10321 -5.36148 1.39559 1.54341 1.83892 2.59294 2.86586 3.06097 3.16224 3.53090 3.93968 4.08913 4.15597 4.23610 4.34597 4.38681 4.52037 4.62460 4.65486 4.68364 4.74134 4.78066 4.89725 4.90908 4.94300 5.04435 5.09475 5.10755 5.23889 5.37343 5.50248 5.99277 6.12052 6.20323 6.27146 6.35187 7.10250 7.79432 8.20292 9.08933 Molecular weight = 228.16amu Principal moments of inertia in cm(-1) A = 0.021317 B = 0.015211 C = 0.011038 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1313.183998 B = 1840.377412 C = 2536.159907 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.160 3.840 3 H 0.056 0.944 4 C 0.050 3.950 5 N -0.534 5.534 6 C 0.023 3.977 7 C 0.067 3.933 8 O -0.401 6.401 9 C 0.058 3.942 10 C 0.021 3.979 11 N -0.599 5.599 12 C 0.124 3.876 13 C -0.229 4.229 14 H 0.042 0.958 15 C -0.016 4.016 16 N -0.953 5.953 17 Si 0.910 3.090 18 H -0.306 1.306 19 H -0.338 1.338 20 H -0.188 1.188 21 H 0.040 0.960 22 H 0.056 0.944 23 H 0.073 0.927 24 H 0.076 0.924 25 H 0.045 0.955 26 H 0.034 0.966 27 H 0.098 0.902 28 H 0.102 0.898 29 H 0.032 0.968 30 H 0.041 0.959 31 H 0.123 0.877 32 H 0.096 0.904 33 H 0.044 0.956 34 H 0.010 0.990 35 H 0.014 0.986 36 H 0.064 0.936 37 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.094 -2.405 15.273 15.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.054 3.946 3 H 0.075 0.925 4 C -0.079 4.079 5 N -0.259 5.259 6 C -0.105 4.105 7 C -0.010 4.010 8 O -0.320 6.320 9 C -0.018 4.018 10 C -0.107 4.107 11 N -0.323 5.323 12 C -0.021 4.021 13 C -0.359 4.359 14 H 0.060 0.940 15 C -0.211 4.211 16 N -0.599 5.599 17 Si 0.741 3.259 18 H -0.237 1.237 19 H -0.270 1.270 20 H -0.109 1.109 21 H 0.060 0.940 22 H 0.075 0.925 23 H 0.092 0.908 24 H 0.095 0.905 25 H 0.063 0.937 26 H 0.052 0.948 27 H 0.116 0.884 28 H 0.120 0.880 29 H 0.050 0.950 30 H 0.059 0.941 31 H 0.141 0.859 32 H 0.114 0.886 33 H 0.062 0.938 34 H 0.028 0.972 35 H 0.032 0.968 36 H 0.083 0.917 37 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -2.766 -2.662 14.951 15.436 hybrid contribution 0.372 -0.254 -0.237 0.509 sum -2.394 -2.916 14.714 15.190 Atomic orbital electron populations 1.22075 0.95501 1.01864 1.01333 1.20768 0.93479 0.95217 0.85127 0.92540 1.22608 0.86751 1.01129 0.97404 1.62123 1.05994 1.28476 1.29320 1.22803 0.94834 0.90501 1.02410 1.22606 0.93776 0.99385 0.85238 1.87883 1.65963 1.38956 1.39196 1.22822 0.92629 0.85358 1.01018 1.22794 0.95894 1.01609 0.90375 1.43994 1.57481 1.09013 1.21773 1.21141 0.96672 0.85418 0.98851 1.18451 1.09651 0.93936 1.13846 0.94048 1.25770 0.98223 1.00955 0.96182 1.70066 1.33136 1.44084 1.12591 0.86552 0.74157 0.79754 0.85393 1.23650 1.26959 1.10897 0.94047 0.92484 0.90800 0.90534 0.93673 0.94765 0.88429 0.88038 0.95013 0.94086 0.85947 0.88594 0.93829 0.97152 0.96807 0.91749 0.93649 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.27 9.19 71.98 0.66 -3.61 16 2 C 0.16 5.58 2.24 44.99 0.10 5.68 16 3 H 0.06 2.11 6.40 -2.39 -0.02 2.10 16 4 C 0.05 1.48 4.54 86.30 0.39 1.88 16 5 N -0.53 -17.73 3.29 -895.19 -2.95 -20.68 16 6 C 0.02 0.81 4.90 86.31 0.42 1.23 16 7 C 0.07 2.43 7.01 72.02 0.50 2.93 16 8 O -0.40 -13.45 10.83 -148.98 -1.61 -15.06 16 9 C 0.06 1.62 7.01 72.01 0.50 2.13 16 10 C 0.02 0.57 5.63 86.31 0.49 1.05 16 11 N -0.60 -26.20 2.07 -702.77 -1.46 -27.66 16 12 C 0.12 5.12 8.76 127.77 1.12 6.24 16 13 C -0.23 -12.32 7.78 84.04 0.65 -11.67 16 14 H 0.04 2.48 8.06 -2.91 -0.02 2.46 16 15 C -0.02 -0.89 5.28 84.86 0.45 -0.44 16 16 N -0.95 -60.09 13.97 21.65 0.30 -59.79 16 17 Si 0.91 45.94 23.69 68.60 1.63 47.57 16 18 H -0.31 -15.67 6.63 99.48 0.66 -15.01 16 19 H -0.34 -18.27 7.11 99.48 0.71 -17.56 16 20 H -0.19 -8.53 5.66 99.48 0.56 -7.97 16 21 H 0.04 1.32 8.14 -2.39 -0.02 1.30 16 22 H 0.06 1.54 7.67 -2.39 -0.02 1.53 16 23 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 24 H 0.08 2.14 6.86 -2.39 -0.02 2.12 16 25 H 0.05 1.15 8.08 -2.39 -0.02 1.13 16 26 H 0.03 1.13 8.14 -2.39 -0.02 1.11 16 27 H 0.10 4.13 3.90 -2.39 -0.01 4.12 16 28 H 0.10 3.39 8.14 -2.39 -0.02 3.37 16 29 H 0.03 1.33 6.51 -2.39 -0.02 1.31 16 30 H 0.04 1.26 8.14 -2.39 -0.02 1.24 16 31 H 0.12 2.53 8.14 -2.39 -0.02 2.52 16 32 H 0.10 2.18 8.14 -2.39 -0.02 2.16 16 33 H 0.04 1.08 8.14 -2.38 -0.02 1.06 16 34 H 0.01 0.43 8.14 -2.39 -0.02 0.41 16 35 H 0.01 0.64 2.78 -2.39 -0.01 0.64 16 36 H 0.06 2.22 6.53 -2.38 -0.02 2.21 16 37 H 0.25 15.59 8.31 -92.70 -0.77 14.82 16 Total: -1.00 -65.54 273.98 2.05 -63.49 By element: Atomic # 1 Polarization: 5.87 SS G_CDS: 0.84 Total: 6.71 kcal Atomic # 6 Polarization: 0.12 SS G_CDS: 5.29 Total: 5.41 kcal Atomic # 7 Polarization: -104.02 SS G_CDS: -4.10 Total: -108.12 kcal Atomic # 8 Polarization: -13.45 SS G_CDS: -1.61 Total: -15.06 kcal Atomic # 14 Polarization: 45.94 SS G_CDS: 1.63 Total: 47.57 kcal Total: -65.54 2.05 -63.49 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611370960.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.166 kcal (2) G-P(sol) polarization free energy of solvation -65.535 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.369 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.490 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds