Wall clock time and date at job start Thu Apr 9 2020 11:59:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86799 * 119.99553 * 2 1 4 4 H 1.48505 * 109.47387 * 269.99740 * 3 2 1 5 5 H 1.48496 * 109.47329 * 29.99852 * 3 2 1 6 6 H 1.48503 * 109.47173 * 149.99887 * 3 2 1 7 7 C 1.37873 * 120.00832 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00813 * 180.02562 * 7 2 1 9 9 C 1.50711 * 119.99443 * 0.02562 * 7 2 1 10 10 N 1.46502 * 109.46588 * 179.97438 * 9 7 2 11 11 C 1.34778 * 119.99286 * 180.02562 * 10 9 7 12 12 O 1.21586 * 120.00463 * 359.97438 * 11 10 9 13 13 N 1.34779 * 119.99809 * 179.97438 * 11 10 9 14 14 O 1.41598 * 120.00229 * 179.97438 * 13 11 10 15 15 C 1.42898 * 114.00166 * 179.97438 * 14 13 11 16 16 C 1.54894 * 110.48190 * 88.24517 * 15 14 13 17 17 C 1.55238 * 102.58338 * 156.67678 * 16 15 14 18 18 C 1.54266 * 104.23333 * 322.08174 * 17 16 15 19 19 C 1.53869 * 106.59800 * 23.61579 * 18 17 16 20 20 H 0.96996 * 120.00199 * 0.02562 * 1 2 3 21 21 H 1.08995 * 109.47128 * 59.99928 * 9 7 2 22 22 H 1.09002 * 109.46955 * 299.99898 * 9 7 2 23 23 H 0.96993 * 120.00415 * 359.97438 * 10 9 7 24 24 H 0.96998 * 119.99702 * 0.02562 * 13 11 10 25 25 H 1.09002 * 110.43427 * 325.70402 * 15 14 13 26 26 H 1.08996 * 110.75388 * 275.06031 * 16 15 14 27 27 H 1.08993 * 110.76071 * 38.44257 * 16 15 14 28 28 H 1.09005 * 110.46917 * 203.39204 * 17 16 15 29 29 H 1.09007 * 110.58541 * 80.83124 * 17 16 15 30 30 H 1.08999 * 110.03060 * 264.32313 * 18 17 16 31 31 H 1.09006 * 110.06829 * 142.91691 * 18 17 16 32 32 H 1.09001 * 110.02983 * 240.71432 * 19 18 17 33 33 H 1.08996 * 110.07773 * 119.30576 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4464 2.6527 0.7000 6 1 3.5466 1.4404 0.7001 7 6 2.0047 -1.1939 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2512 -2.4991 0.0005 10 7 2.2034 -3.6125 0.0005 11 6 1.7541 -4.8832 0.0000 12 8 0.5588 -5.1055 0.0000 13 7 2.6300 -5.9076 -0.0005 14 8 2.1581 -7.2427 -0.0005 15 6 3.1952 -8.2257 -0.0017 16 6 3.6204 -8.5668 1.4482 17 6 4.2360 -9.9837 1.2957 18 6 3.3343 -10.6790 0.2549 19 6 2.6726 -9.5613 -0.5700 20 1 -0.4850 0.8400 -0.0004 21 1 0.6249 -2.5571 -0.8896 22 1 0.6242 -2.5567 0.8903 23 1 3.1570 -3.4352 0.0002 24 1 3.5836 -5.7303 -0.0001 25 1 4.0515 -7.8749 -0.5778 26 1 4.3641 -7.8567 1.8098 27 1 2.7542 -8.5909 2.1093 28 1 4.2039 -10.5175 2.2456 29 1 5.2609 -9.9190 0.9301 30 1 2.5717 -11.2727 0.7588 31 1 3.9350 -11.3163 -0.3941 32 1 1.5888 -9.6125 -0.4664 33 1 2.9520 -9.6553 -1.6194 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000787359467.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 11:59:09 Heat of formation + Delta-G solvation = -39.576491 kcal Electronic energy + Delta-G solvation = -15456.522498 eV Core-core repulsion = 12711.978120 eV Total energy + Delta-G solvation = -2744.544378 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 228.126 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -39.25230 -38.40196 -35.80044 -34.06512 -32.48809 -31.18673 -28.97356 -27.74740 -26.68953 -22.67376 -21.09634 -20.77143 -20.15266 -18.14313 -18.01517 -16.08357 -15.68936 -15.38515 -14.97911 -14.75190 -14.12243 -13.77359 -13.50163 -13.15513 -12.71563 -12.38508 -11.96045 -11.84695 -11.51051 -11.38804 -11.04569 -10.95024 -10.89106 -10.77540 -10.53514 -10.29009 -9.41272 -9.36755 -8.73126 -8.51877 -7.78613 -6.14247 -4.21177 2.10397 3.26055 3.32101 3.34561 3.97351 4.26940 4.28608 4.33557 4.42075 4.76116 4.90803 5.07974 5.18659 5.20721 5.21841 5.34877 5.37237 5.60866 5.64406 5.77975 5.94317 5.96615 6.05347 6.94600 7.28579 7.48841 7.53052 7.57737 7.88991 8.02752 8.74790 8.92342 9.34930 9.48636 10.95961 Molecular weight = 228.13amu Principal moments of inertia in cm(-1) A = 0.071398 B = 0.004208 C = 0.004067 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 392.071049 B = 6651.811326 C = 6882.813255 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.064 3.936 3 Si 0.905 3.095 4 H -0.279 1.279 5 H -0.285 1.285 6 H -0.273 1.273 7 C -0.542 4.542 8 H 0.063 0.937 9 C 0.269 3.731 10 N -0.720 5.720 11 C 0.708 3.292 12 O -0.582 6.582 13 N -0.624 5.624 14 O -0.124 6.124 15 C 0.054 3.946 16 C -0.148 4.148 17 C -0.124 4.124 18 C -0.121 4.121 19 C -0.116 4.116 20 H 0.266 0.734 21 H 0.027 0.973 22 H 0.027 0.973 23 H 0.387 0.613 24 H 0.397 0.603 25 H 0.079 0.921 26 H 0.070 0.930 27 H 0.080 0.920 28 H 0.069 0.931 29 H 0.067 0.933 30 H 0.068 0.932 31 H 0.067 0.933 32 H 0.081 0.919 33 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.246 -17.139 0.687 20.511 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.140 4.140 3 Si 0.733 3.267 4 H -0.205 1.205 5 H -0.210 1.210 6 H -0.198 1.198 7 C -0.581 4.581 8 H 0.082 0.918 9 C 0.149 3.851 10 N -0.377 5.377 11 C 0.409 3.591 12 O -0.459 6.459 13 N -0.331 5.331 14 O -0.126 6.126 15 C -0.005 4.005 16 C -0.186 4.186 17 C -0.161 4.161 18 C -0.159 4.159 19 C -0.155 4.155 20 H 0.076 0.924 21 H 0.045 0.955 22 H 0.045 0.955 23 H 0.219 0.781 24 H 0.236 0.764 25 H 0.097 0.903 26 H 0.088 0.912 27 H 0.099 0.901 28 H 0.087 0.913 29 H 0.085 0.915 30 H 0.087 0.913 31 H 0.086 0.914 32 H 0.099 0.901 33 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 9.700 -17.262 0.689 19.813 hybrid contribution 1.582 0.897 0.000 1.818 sum 11.282 -16.365 0.689 19.889 Atomic orbital electron populations 1.69979 1.06092 1.27326 1.48801 1.24942 0.94921 0.99388 0.94756 0.86394 0.79567 0.82603 0.78184 1.20482 1.21018 1.19773 1.21211 0.93313 0.90278 1.53293 0.91839 1.19065 0.87634 0.80495 0.97927 1.45607 1.11028 1.03103 1.77967 1.15706 0.84755 0.79909 0.78758 1.90895 1.13951 1.83406 1.57619 1.46460 1.07460 0.94562 1.84646 1.90583 1.23732 1.01415 1.96914 1.23508 0.91613 0.88973 0.96386 1.23116 1.01440 0.96858 0.97195 1.22339 0.98917 0.95571 0.99303 1.22085 0.98974 0.97311 0.97503 1.22105 1.02232 0.91535 0.99593 0.92410 0.95479 0.95458 0.78071 0.76416 0.90315 0.91164 0.90111 0.91267 0.91460 0.91303 0.91435 0.90056 0.90740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.17 13.29 55.43 0.74 -25.44 16 2 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 3 Si 0.91 20.79 29.54 -169.99 -5.02 15.77 16 4 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 5 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 6 H -0.27 -6.07 7.11 56.52 0.40 -5.66 16 7 C -0.54 -14.72 9.28 -34.44 -0.32 -15.04 16 8 H 0.06 1.60 7.60 -52.49 -0.40 1.20 16 9 C 0.27 7.26 5.43 -5.19 -0.03 7.23 16 10 N -0.72 -15.63 5.55 -66.41 -0.37 -16.00 16 11 C 0.71 15.66 8.71 -86.92 -0.76 14.90 16 12 O -0.58 -15.86 16.75 -12.86 -0.22 -16.08 16 13 N -0.62 -10.48 6.38 27.63 0.18 -10.31 16 14 O -0.12 -2.07 10.82 -29.62 -0.32 -2.39 16 15 C 0.05 0.61 3.49 -25.07 -0.09 0.52 16 16 C -0.15 -1.46 6.65 -24.55 -0.16 -1.63 16 17 C -0.12 -0.93 6.84 -24.88 -0.17 -1.10 16 18 C -0.12 -0.91 6.80 -25.62 -0.17 -1.09 16 19 C -0.12 -1.12 6.56 -25.62 -0.17 -1.28 16 20 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 21 H 0.03 0.81 8.14 -51.93 -0.42 0.38 16 22 H 0.03 0.81 8.14 -51.93 -0.42 0.39 16 23 H 0.39 6.95 8.33 -40.82 -0.34 6.61 16 24 H 0.40 4.96 8.45 -40.82 -0.35 4.61 16 25 H 0.08 0.76 7.97 -51.93 -0.41 0.34 16 26 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.08 0.92 8.14 -51.93 -0.42 0.49 16 28 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 29 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.08 0.89 8.07 -51.93 -0.42 0.47 16 33 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 LS Contribution 284.87 15.07 4.29 4.29 Total: -1.00 -34.00 284.87 -7.54 -41.54 By element: Atomic # 1 Polarization: 9.27 SS G_CDS: -4.86 Total: 4.42 kcal Atomic # 6 Polarization: 6.15 SS G_CDS: -1.97 Total: 4.19 kcal Atomic # 7 Polarization: -52.28 SS G_CDS: 0.54 Total: -51.74 kcal Atomic # 8 Polarization: -17.93 SS G_CDS: -0.54 Total: -18.47 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.02 Total: 15.77 kcal Total LS contribution 4.29 Total: 4.29 kcal Total: -34.00 -7.54 -41.54 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787359467.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.965 kcal (2) G-P(sol) polarization free energy of solvation -34.000 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.035 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.541 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.541 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.576 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds