Wall clock time and date at job start Thu Apr 9 2020 11:59:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86799 * 120.00145 * 2 1 4 4 H 1.48501 * 109.47228 * 239.99793 * 3 2 1 5 5 H 1.48506 * 109.47124 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47193 * 119.99570 * 3 2 1 7 7 C 1.37873 * 119.99864 * 179.97438 * 2 1 3 8 8 H 1.08010 * 119.99873 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00519 * 0.02562 * 7 2 1 10 10 N 1.46492 * 109.47315 * 180.02562 * 9 7 2 11 11 C 1.34786 * 119.99785 * 180.02562 * 10 9 7 12 12 O 1.21587 * 120.00043 * 359.97438 * 11 10 9 13 13 N 1.34775 * 119.99711 * 179.97438 * 11 10 9 14 14 C 1.46501 * 119.99789 * 179.97438 * 13 11 10 15 15 C 1.52995 * 109.47289 * 180.02562 * 14 13 11 16 16 H 1.08999 * 109.47504 * 59.99456 * 15 14 13 17 17 O 1.42907 * 109.46879 * 299.99870 * 15 14 13 18 18 C 1.53003 * 109.47289 * 180.02562 * 15 14 13 19 19 C 1.53001 * 117.51964 * 116.28130 * 18 15 14 20 20 C 1.52999 * 60.00190 * 107.47982 * 19 18 15 21 21 H 0.96998 * 119.99790 * 0.02562 * 1 2 3 22 22 H 1.09000 * 109.47040 * 59.99698 * 9 7 2 23 23 H 1.09002 * 109.46720 * 299.99994 * 9 7 2 24 24 H 0.97003 * 120.00451 * 359.97438 * 10 9 7 25 25 H 0.96994 * 120.00505 * 359.97438 * 13 11 10 26 26 H 1.08999 * 109.47292 * 59.99462 * 14 13 11 27 27 H 1.09005 * 109.46856 * 299.99743 * 14 13 11 28 28 H 0.96703 * 113.99453 * 299.99591 * 17 15 14 29 29 H 1.09002 * 115.54973 * 330.57913 * 18 15 14 30 30 H 1.09001 * 117.49733 * 214.97413 * 19 18 15 31 31 H 1.08995 * 117.49577 * 359.97438 * 19 18 15 32 32 H 1.09004 * 117.50150 * 252.51496 * 20 19 18 33 33 H 1.09004 * 117.49681 * 107.48417 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2842 2.7465 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 7 2.2031 -3.6126 0.0018 11 6 1.7538 -4.8834 0.0015 12 8 0.5584 -5.1055 0.0006 13 7 2.6296 -5.9077 0.0021 14 6 2.1413 -7.2890 0.0023 15 6 3.3313 -8.2506 0.0037 16 1 3.9362 -8.0789 0.8940 17 8 4.1260 -8.0266 -1.1627 18 6 2.8213 -9.6931 0.0033 19 6 3.1533 -10.5600 -1.2129 20 6 3.8605 -10.8099 0.1206 21 1 -0.4850 0.8400 -0.0004 22 1 0.6247 -2.5571 -0.8897 23 1 0.6241 -2.5567 0.8903 24 1 3.1568 -3.4354 0.0021 25 1 3.5832 -5.7305 0.0024 26 1 1.5360 -7.4605 -0.8878 27 1 1.5355 -7.4599 0.8922 28 1 3.6510 -8.1615 -1.9941 29 1 1.8564 -9.8508 0.4854 30 1 2.4070 -11.2880 -1.5310 31 1 3.7349 -10.1026 -2.0132 32 1 4.9076 -10.5169 0.1978 33 1 3.5793 -11.7023 0.6799 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000787359835.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 11:59:13 Heat of formation + Delta-G solvation = -65.962611 kcal Electronic energy + Delta-G solvation = -15391.273398 eV Core-core repulsion = 12645.584832 eV Total energy + Delta-G solvation = -2745.688566 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 228.126 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.56413 -38.61156 -35.49226 -34.26701 -33.72857 -32.24682 -29.35831 -26.90864 -23.80318 -22.71896 -22.13972 -20.96499 -19.95668 -18.06895 -17.14075 -16.37726 -15.94439 -15.67312 -15.13037 -14.55930 -14.45382 -14.06053 -13.49030 -13.04296 -12.76824 -12.57992 -11.91868 -11.79451 -11.63349 -11.40913 -10.95047 -10.84556 -10.80776 -10.50389 -10.27483 -10.11925 -9.38075 -9.34654 -8.74961 -8.63786 -7.71262 -6.12207 -4.18701 3.28335 3.28937 3.33266 3.36816 3.46985 3.98765 4.17871 4.35190 4.41522 4.57074 4.65638 4.91625 5.07323 5.21847 5.23734 5.25301 5.36809 5.58517 5.79710 5.83982 5.85163 5.94272 6.88268 7.16756 7.38719 7.55876 7.59368 7.60821 7.95385 8.08795 8.80181 8.99168 9.37374 9.52018 10.98097 Molecular weight = 228.13amu Principal moments of inertia in cm(-1) A = 0.073298 B = 0.004132 C = 0.003990 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 381.911033 B = 6774.513835 C = 7016.099973 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.063 3.937 3 Si 0.905 3.095 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.275 1.275 7 C -0.542 4.542 8 H 0.062 0.938 9 C 0.267 3.733 10 N -0.729 5.729 11 C 0.692 3.308 12 O -0.604 6.604 13 N -0.753 5.753 14 C 0.114 3.886 15 C 0.126 3.874 16 H 0.108 0.892 17 O -0.557 6.557 18 C -0.190 4.190 19 C -0.176 4.176 20 C -0.170 4.170 21 H 0.266 0.734 22 H 0.024 0.976 23 H 0.024 0.976 24 H 0.387 0.613 25 H 0.395 0.605 26 H 0.065 0.935 27 H 0.070 0.930 28 H 0.377 0.623 29 H 0.114 0.886 30 H 0.094 0.906 31 H 0.101 0.899 32 H 0.097 0.903 33 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.641 -18.282 -0.831 20.238 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.140 4.140 3 Si 0.732 3.268 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.201 1.201 7 C -0.580 4.580 8 H 0.080 0.920 9 C 0.146 3.854 10 N -0.381 5.381 11 C 0.392 3.608 12 O -0.484 6.484 13 N -0.411 5.411 14 C -0.011 4.011 15 C 0.067 3.933 16 H 0.126 0.874 17 O -0.363 6.363 18 C -0.209 4.209 19 C -0.213 4.213 20 C -0.207 4.207 21 H 0.076 0.924 22 H 0.042 0.958 23 H 0.042 0.958 24 H 0.219 0.781 25 H 0.229 0.771 26 H 0.083 0.917 27 H 0.089 0.911 28 H 0.226 0.774 29 H 0.132 0.868 30 H 0.112 0.888 31 H 0.120 0.880 32 H 0.116 0.884 33 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 7.773 -18.177 -0.387 19.773 hybrid contribution 0.745 0.900 -0.331 1.214 sum 8.517 -17.277 -0.719 19.276 Atomic orbital electron populations 1.69972 1.06096 1.27349 1.48966 1.24946 0.94917 0.99393 0.94787 0.86464 0.79384 0.82306 0.78663 1.20083 1.21098 1.20096 1.21206 0.93255 0.90474 1.53111 0.91983 1.18968 0.87798 0.81093 0.97564 1.45706 1.10789 1.04405 1.77226 1.16164 0.85162 0.81117 0.78395 1.90865 1.14323 1.84317 1.58862 1.45008 1.09094 1.04686 1.82333 1.21690 0.95822 0.80848 1.02778 1.21664 0.91765 0.90500 0.89377 0.87441 1.86573 1.41363 1.92340 1.16068 1.23029 1.00948 0.92501 1.04447 1.22965 1.03648 1.02612 0.92077 1.22916 0.98000 0.99409 1.00348 0.92428 0.95780 0.95781 0.78129 0.77110 0.91688 0.91144 0.77430 0.86831 0.88765 0.88039 0.88448 0.88872 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.53 13.29 55.43 0.74 -25.79 16 2 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 3 Si 0.90 21.13 29.54 -169.99 -5.02 16.10 16 4 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 5 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 6 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 7 C -0.54 -15.04 9.28 -34.44 -0.32 -15.36 16 8 H 0.06 1.61 7.60 -52.48 -0.40 1.21 16 9 C 0.27 7.32 5.43 -5.20 -0.03 7.30 16 10 N -0.73 -16.13 5.55 -66.42 -0.37 -16.50 16 11 C 0.69 14.76 8.57 -86.91 -0.74 14.02 16 12 O -0.60 -15.51 16.34 5.29 0.09 -15.43 16 13 N -0.75 -11.61 5.45 -65.22 -0.36 -11.97 16 14 C 0.11 1.46 5.30 -4.04 -0.02 1.43 16 15 C 0.13 1.20 3.40 -26.73 -0.09 1.11 16 16 H 0.11 1.01 8.14 -51.93 -0.42 0.58 16 17 O -0.56 -5.44 12.13 -35.23 -0.43 -5.87 16 18 C -0.19 -1.55 5.73 -90.61 -0.52 -2.07 16 19 C -0.18 -1.27 9.70 -26.73 -0.26 -1.53 16 20 C -0.17 -1.26 10.24 -26.73 -0.27 -1.53 16 21 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 22 H 0.02 0.73 8.14 -51.93 -0.42 0.31 16 23 H 0.02 0.73 8.14 -51.93 -0.42 0.31 16 24 H 0.39 7.36 8.34 -40.82 -0.34 7.02 16 25 H 0.40 5.19 8.36 -40.82 -0.34 4.85 16 26 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 27 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 28 H 0.38 2.88 7.79 45.56 0.35 3.23 16 29 H 0.11 0.90 8.08 -51.93 -0.42 0.48 16 30 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.10 0.70 6.47 -51.93 -0.34 0.36 16 32 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 LS Contribution 286.80 15.07 4.32 4.32 Total: -1.00 -33.55 286.80 -7.38 -40.93 By element: Atomic # 1 Polarization: 13.16 SS G_CDS: -4.00 Total: 9.16 kcal Atomic # 6 Polarization: 7.40 SS G_CDS: -2.35 Total: 5.05 kcal Atomic # 7 Polarization: -54.28 SS G_CDS: 0.01 Total: -54.26 kcal Atomic # 8 Polarization: -20.96 SS G_CDS: -0.34 Total: -21.30 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.10 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -33.55 -7.38 -40.93 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787359835.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.032 kcal (2) G-P(sol) polarization free energy of solvation -33.551 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.583 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.380 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.931 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.963 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds