Wall clock time and date at job start Thu Apr 9 2020 11:59:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86799 * 120.00145 * 2 1 4 4 H 1.48501 * 109.47228 * 239.99793 * 3 2 1 5 5 H 1.48506 * 109.47124 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47193 * 119.99570 * 3 2 1 7 7 C 1.37873 * 119.99864 * 179.97438 * 2 1 3 8 8 H 1.08010 * 119.99873 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00519 * 0.02562 * 7 2 1 10 10 N 1.46492 * 109.47315 * 180.02562 * 9 7 2 11 11 C 1.34786 * 119.99785 * 180.02562 * 10 9 7 12 12 O 1.21587 * 120.00043 * 359.97438 * 11 10 9 13 13 N 1.34775 * 119.99711 * 179.97438 * 11 10 9 14 14 C 1.46501 * 119.99789 * 179.97438 * 13 11 10 15 15 C 1.52995 * 109.47289 * 180.02562 * 14 13 11 16 16 H 1.08999 * 109.47504 * 59.99456 * 15 14 13 17 17 O 1.42907 * 109.46879 * 299.99870 * 15 14 13 18 18 C 1.53003 * 109.47289 * 180.02562 * 15 14 13 19 19 C 1.53001 * 117.51964 * 116.28130 * 18 15 14 20 20 C 1.52999 * 60.00190 * 107.47982 * 19 18 15 21 21 H 0.96998 * 119.99790 * 0.02562 * 1 2 3 22 22 H 1.09000 * 109.47040 * 59.99698 * 9 7 2 23 23 H 1.09002 * 109.46720 * 299.99994 * 9 7 2 24 24 H 0.97003 * 120.00451 * 359.97438 * 10 9 7 25 25 H 0.96994 * 120.00505 * 359.97438 * 13 11 10 26 26 H 1.08999 * 109.47292 * 59.99462 * 14 13 11 27 27 H 1.09005 * 109.46856 * 299.99743 * 14 13 11 28 28 H 0.96703 * 113.99453 * 299.99591 * 17 15 14 29 29 H 1.09002 * 115.54973 * 330.57913 * 18 15 14 30 30 H 1.09001 * 117.49733 * 214.97413 * 19 18 15 31 31 H 1.08995 * 117.49577 * 359.97438 * 19 18 15 32 32 H 1.09004 * 117.50150 * 252.51496 * 20 19 18 33 33 H 1.09004 * 117.49681 * 107.48417 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2842 2.7465 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 7 2.2031 -3.6126 0.0018 11 6 1.7538 -4.8834 0.0015 12 8 0.5584 -5.1055 0.0006 13 7 2.6296 -5.9077 0.0021 14 6 2.1413 -7.2890 0.0023 15 6 3.3313 -8.2506 0.0037 16 1 3.9362 -8.0789 0.8940 17 8 4.1260 -8.0266 -1.1627 18 6 2.8213 -9.6931 0.0033 19 6 3.1533 -10.5600 -1.2129 20 6 3.8605 -10.8099 0.1206 21 1 -0.4850 0.8400 -0.0004 22 1 0.6247 -2.5571 -0.8897 23 1 0.6241 -2.5567 0.8903 24 1 3.1568 -3.4354 0.0021 25 1 3.5832 -5.7305 0.0024 26 1 1.5360 -7.4605 -0.8878 27 1 1.5355 -7.4599 0.8922 28 1 3.6510 -8.1615 -1.9941 29 1 1.8564 -9.8508 0.4854 30 1 2.4070 -11.2880 -1.5310 31 1 3.7349 -10.1026 -2.0132 32 1 4.9076 -10.5169 0.1978 33 1 3.5793 -11.7023 0.6799 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000787359835.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 11:59:12 Heat of formation + Delta-G solvation = -93.399766 kcal Electronic energy + Delta-G solvation = -15392.463162 eV Core-core repulsion = 12645.584832 eV Total energy + Delta-G solvation = -2746.878330 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 228.126 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.97827 -39.68453 -36.43264 -36.04280 -35.16510 -34.28684 -30.61048 -28.80501 -25.20757 -23.95314 -23.20100 -22.04217 -21.34639 -19.77051 -18.21949 -17.84320 -17.22623 -17.02014 -16.51679 -16.28246 -15.91926 -15.05977 -14.93885 -14.59961 -14.23209 -14.01065 -13.52597 -13.32347 -12.91004 -12.66480 -12.33169 -12.22748 -12.17885 -11.49411 -11.44849 -11.35881 -11.09750 -10.82274 -10.78771 -10.28473 -9.58098 -8.27573 -6.44274 1.44154 1.48877 1.56806 1.87342 2.23992 2.40550 2.84179 3.07195 3.34770 3.58354 3.66248 3.91736 4.03735 4.22244 4.27831 4.45716 4.70524 4.83288 5.02124 5.04476 5.09441 5.24204 5.27442 5.30759 5.48804 5.52648 5.68159 5.85773 6.26611 6.67277 6.70754 7.24959 7.31669 7.72225 8.84699 Molecular weight = 228.13amu Principal moments of inertia in cm(-1) A = 0.073298 B = 0.004132 C = 0.003990 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 381.911033 B = 6774.513835 C = 7016.099973 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.004 3.996 3 Si 0.987 3.013 4 H -0.262 1.262 5 H -0.285 1.285 6 H -0.262 1.262 7 C -0.557 4.557 8 H 0.083 0.917 9 C 0.285 3.715 10 N -0.723 5.723 11 C 0.689 3.311 12 O -0.651 6.651 13 N -0.728 5.728 14 C 0.111 3.889 15 C 0.142 3.858 16 H 0.114 0.886 17 O -0.564 6.564 18 C -0.199 4.199 19 C -0.173 4.173 20 C -0.166 4.166 21 H 0.269 0.731 22 H -0.015 1.015 23 H -0.015 1.015 24 H 0.404 0.596 25 H 0.411 0.589 26 H 0.059 0.941 27 H 0.064 0.936 28 H 0.387 0.613 29 H 0.114 0.886 30 H 0.102 0.898 31 H 0.105 0.895 32 H 0.095 0.905 33 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.970 -18.583 -0.936 21.599 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.196 4.196 3 Si 0.810 3.190 4 H -0.186 1.186 5 H -0.210 1.210 6 H -0.187 1.187 7 C -0.595 4.595 8 H 0.101 0.899 9 C 0.162 3.838 10 N -0.377 5.377 11 C 0.389 3.611 12 O -0.534 6.534 13 N -0.385 5.385 14 C -0.013 4.013 15 C 0.083 3.917 16 H 0.131 0.869 17 O -0.372 6.372 18 C -0.218 4.218 19 C -0.210 4.210 20 C -0.203 4.203 21 H 0.078 0.922 22 H 0.003 0.997 23 H 0.003 0.997 24 H 0.240 0.760 25 H 0.247 0.753 26 H 0.077 0.923 27 H 0.083 0.917 28 H 0.237 0.763 29 H 0.133 0.867 30 H 0.120 0.880 31 H 0.124 0.876 32 H 0.114 0.886 33 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 10.182 -18.539 -0.500 21.157 hybrid contribution -0.001 0.883 -0.313 0.936 sum 10.181 -17.657 -0.812 20.398 Atomic orbital electron populations 1.70139 1.08288 1.28661 1.49890 1.26079 0.95799 1.03903 0.93818 0.85174 0.77869 0.76458 0.79491 1.18649 1.21035 1.18661 1.21583 0.94320 0.90510 1.53054 0.89854 1.18409 0.88118 0.83366 0.93946 1.45304 1.10884 1.03860 1.77659 1.16347 0.85106 0.81676 0.77980 1.90832 1.16758 1.85016 1.60831 1.44799 1.09093 1.04456 1.80183 1.21930 0.97468 0.79706 1.02244 1.21496 0.90225 0.90343 0.89654 0.86854 1.86559 1.41608 1.92384 1.16609 1.22944 1.01385 0.91724 1.05709 1.23060 1.03687 1.02279 0.91993 1.22974 0.97619 0.99190 1.00479 0.92206 0.99662 0.99658 0.76041 0.75269 0.92291 0.91745 0.76315 0.86749 0.87989 0.87630 0.88611 0.87852 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.91 13.29 21.45 0.28 -56.63 16 2 C 0.00 0.20 5.46 84.65 0.46 0.66 16 3 Si 0.99 42.71 29.54 68.60 2.03 44.74 16 4 H -0.26 -10.72 7.11 99.48 0.71 -10.01 16 5 H -0.28 -12.20 7.11 99.48 0.71 -11.49 16 6 H -0.26 -10.72 7.11 99.48 0.71 -10.02 16 7 C -0.56 -30.91 9.28 25.60 0.24 -30.67 16 8 H 0.08 4.17 7.60 -2.91 -0.02 4.15 16 9 C 0.28 16.18 5.43 85.63 0.46 16.65 16 10 N -0.72 -32.23 5.55 -482.30 -2.68 -34.91 16 11 C 0.69 29.65 8.57 179.05 1.53 31.19 16 12 O -0.65 -34.50 16.34 -3.99 -0.07 -34.56 16 13 N -0.73 -21.71 5.45 -478.53 -2.61 -24.32 16 14 C 0.11 2.73 5.30 86.38 0.46 3.19 16 15 C 0.14 2.43 3.40 30.59 0.10 2.54 16 16 H 0.11 1.86 8.14 -2.39 -0.02 1.84 16 17 O -0.56 -9.74 12.13 -148.98 -1.81 -11.54 16 18 C -0.20 -2.86 5.73 -10.79 -0.06 -2.92 16 19 C -0.17 -2.14 9.70 30.59 0.30 -1.84 16 20 C -0.17 -2.09 10.24 30.60 0.31 -1.77 16 21 H 0.27 15.34 8.31 -92.71 -0.77 14.57 16 22 H -0.01 -0.93 8.14 -2.39 -0.02 -0.95 16 23 H -0.01 -0.93 8.14 -2.39 -0.02 -0.95 16 24 H 0.40 14.95 8.34 -92.71 -0.77 14.18 16 25 H 0.41 9.94 8.36 -92.71 -0.78 9.17 16 26 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 27 H 0.06 1.70 8.14 -2.38 -0.02 1.68 16 28 H 0.39 5.08 7.79 -74.06 -0.58 4.50 16 29 H 0.11 1.65 8.08 -2.39 -0.02 1.63 16 30 H 0.10 1.11 8.14 -2.39 -0.02 1.09 16 31 H 0.11 1.21 6.47 -2.39 -0.02 1.20 16 32 H 0.10 1.26 8.14 -2.39 -0.02 1.24 16 33 H 0.10 1.10 8.14 -2.38 -0.02 1.08 16 Total: -1.00 -73.74 286.80 -2.03 -75.77 By element: Atomic # 1 Polarization: 25.42 SS G_CDS: -0.99 Total: 24.43 kcal Atomic # 6 Polarization: 13.21 SS G_CDS: 3.81 Total: 17.02 kcal Atomic # 7 Polarization: -110.85 SS G_CDS: -5.00 Total: -115.85 kcal Atomic # 8 Polarization: -44.23 SS G_CDS: -1.87 Total: -46.10 kcal Atomic # 14 Polarization: 42.71 SS G_CDS: 2.03 Total: 44.74 kcal Total: -73.74 -2.03 -75.77 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787359835.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.629 kcal (2) G-P(sol) polarization free energy of solvation -73.743 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.771 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds