Wall clock time and date at job start Thu Apr 9 2020 11:59:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86793 * 120.00170 * 2 1 4 4 H 1.48504 * 109.47229 * 269.99716 * 3 2 1 5 5 H 1.48502 * 109.47036 * 30.00306 * 3 2 1 6 6 H 1.48506 * 109.46973 * 149.99873 * 3 2 1 7 7 C 1.37880 * 119.99780 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99906 * 180.02562 * 7 2 1 9 9 C 1.50702 * 119.99932 * 359.97438 * 7 2 1 10 10 N 1.46503 * 109.46635 * 180.02562 * 9 7 2 11 11 C 1.34778 * 119.99302 * 180.02562 * 10 9 7 12 12 O 1.21583 * 120.00889 * 359.97438 * 11 10 9 13 13 N 1.34779 * 119.99577 * 180.02562 * 11 10 9 14 14 C 1.46502 * 120.00276 * 179.97438 * 13 11 10 15 15 C 1.52998 * 109.47410 * 185.01177 * 14 13 11 16 16 C 1.52997 * 115.54752 * 65.20141 * 15 14 13 17 17 O 1.42901 * 109.47194 * 65.13930 * 16 15 14 18 18 C 1.53005 * 117.49697 * 210.87000 * 15 14 13 19 19 C 1.52999 * 117.49679 * 279.52713 * 15 14 13 20 20 H 0.97000 * 120.00149 * 0.02562 * 1 2 3 21 21 H 1.08994 * 109.46900 * 60.00913 * 9 7 2 22 22 H 1.09001 * 109.47264 * 300.00102 * 9 7 2 23 23 H 0.96996 * 120.00815 * 359.97438 * 10 9 7 24 24 H 0.97000 * 120.00671 * 0.02562 * 13 11 10 25 25 H 1.09003 * 109.46717 * 65.00782 * 14 13 11 26 26 H 1.09002 * 109.47013 * 305.01707 * 14 13 11 27 27 H 1.08998 * 109.47144 * 305.13429 * 16 15 14 28 28 H 1.09008 * 109.46996 * 185.13907 * 16 15 14 29 29 H 0.96702 * 113.99436 * 179.97438 * 17 16 15 30 30 H 1.09007 * 117.49579 * 215.00537 * 18 15 14 31 31 H 1.08996 * 117.49651 * 0.02562 * 18 15 14 32 32 H 1.08992 * 117.50149 * 359.97438 * 19 15 14 33 33 H 1.09000 * 117.49695 * 144.99991 * 19 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6176 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4400 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 7 2.2030 -3.6127 -0.0005 11 6 1.7536 -4.8834 -0.0011 12 8 0.5583 -5.1056 -0.0011 13 7 2.6294 -5.9078 -0.0005 14 6 2.1411 -7.2890 -0.0005 15 6 3.3258 -8.2489 0.1261 16 6 4.0962 -8.1756 1.4459 17 8 3.2477 -8.5945 2.5167 18 6 3.1997 -9.6190 -0.5432 19 6 4.1245 -8.5564 -1.1421 20 1 -0.4850 0.8400 -0.0004 21 1 0.6241 -2.5567 -0.8903 22 1 0.6246 -2.5571 0.8897 23 1 3.1566 -3.4356 -0.0009 24 1 3.5831 -5.7307 0.0006 25 1 1.6111 -7.4870 -0.9322 26 1 1.4637 -7.4349 0.8409 27 1 4.4217 -7.1500 1.6202 28 1 4.9669 -8.8294 1.3952 29 1 3.6716 -8.5737 3.3856 30 1 3.6656 -10.4682 -0.0431 31 1 2.2729 -9.8363 -1.0740 32 1 3.8058 -8.0753 -2.0667 33 1 5.1989 -8.7065 -1.0362 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000787371494.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 11:59:18 Heat of formation + Delta-G solvation = -63.314767 kcal Electronic energy + Delta-G solvation = -15557.305505 eV Core-core repulsion = 12811.731759 eV Total energy + Delta-G solvation = -2745.573747 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 228.126 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.51040 -38.35036 -35.96976 -34.17132 -33.51621 -32.18699 -27.98968 -26.98605 -25.66214 -22.73156 -22.33594 -20.06575 -19.45826 -17.95649 -17.47308 -16.35966 -15.77959 -15.33709 -15.16747 -14.58605 -14.45019 -13.83692 -13.43247 -13.07238 -12.98001 -12.66055 -11.92548 -11.73553 -11.69742 -11.22691 -10.92202 -10.86101 -10.63769 -10.34191 -10.26272 -10.01981 -9.33344 -9.30923 -8.71165 -8.59073 -7.68737 -6.11722 -4.18125 3.17715 3.26894 3.32838 3.35408 3.68365 4.04021 4.12857 4.35993 4.50957 4.57940 4.75716 4.97739 5.17091 5.22966 5.24226 5.42721 5.48001 5.68535 5.69689 5.91414 5.99313 6.13532 6.95629 7.19270 7.46543 7.57617 7.61371 7.62767 7.96933 8.10169 8.81374 9.01615 9.39676 9.54223 10.98634 Molecular weight = 228.13amu Principal moments of inertia in cm(-1) A = 0.047745 B = 0.004658 C = 0.004599 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 586.302251 B = 6009.916606 C = 6086.841221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.063 3.937 3 Si 0.904 3.096 4 H -0.279 1.279 5 H -0.285 1.285 6 H -0.273 1.273 7 C -0.541 4.541 8 H 0.062 0.938 9 C 0.267 3.733 10 N -0.731 5.731 11 C 0.693 3.307 12 O -0.602 6.602 13 N -0.754 5.754 14 C 0.183 3.817 15 C -0.143 4.143 16 C 0.115 3.885 17 O -0.565 6.565 18 C -0.155 4.155 19 C -0.165 4.165 20 H 0.265 0.735 21 H 0.024 0.976 22 H 0.024 0.976 23 H 0.385 0.615 24 H 0.389 0.611 25 H 0.059 0.941 26 H 0.075 0.925 27 H 0.052 0.948 28 H 0.045 0.955 29 H 0.378 0.622 30 H 0.097 0.903 31 H 0.099 0.901 32 H 0.102 0.898 33 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.753 -16.314 0.922 20.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.140 4.140 3 Si 0.731 3.269 4 H -0.205 1.205 5 H -0.210 1.210 6 H -0.198 1.198 7 C -0.579 4.579 8 H 0.080 0.920 9 C 0.145 3.855 10 N -0.383 5.383 11 C 0.392 3.608 12 O -0.481 6.481 13 N -0.411 5.411 14 C 0.059 3.941 15 C -0.144 4.144 16 C 0.038 3.962 17 O -0.371 6.371 18 C -0.193 4.193 19 C -0.202 4.202 20 H 0.075 0.925 21 H 0.042 0.958 22 H 0.042 0.958 23 H 0.217 0.783 24 H 0.222 0.778 25 H 0.077 0.923 26 H 0.093 0.907 27 H 0.070 0.930 28 H 0.063 0.937 29 H 0.225 0.775 30 H 0.116 0.884 31 H 0.117 0.883 32 H 0.121 0.879 33 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 9.997 -16.416 0.433 19.225 hybrid contribution 1.769 1.172 0.443 2.168 sum 11.766 -15.244 0.876 19.276 Atomic orbital electron populations 1.69982 1.06092 1.27216 1.49027 1.24947 0.94903 0.99375 0.94823 0.86414 0.79580 0.82711 0.78162 1.20504 1.21029 1.19813 1.21233 0.93236 0.90477 1.52996 0.91993 1.18969 0.87814 0.81088 0.97587 1.45699 1.10665 1.04443 1.77474 1.16146 0.85199 0.81034 0.78393 1.90869 1.14306 1.84254 1.58644 1.45091 1.08641 1.05052 1.82358 1.20432 0.93129 0.78587 1.02003 1.21610 1.00547 0.99364 0.92873 1.21548 0.90887 0.98325 0.85473 1.86521 1.42409 1.90053 1.18079 1.22963 1.01875 0.91696 1.02767 1.23082 0.97871 1.02973 0.96235 0.92489 0.95782 0.95772 0.78282 0.77823 0.92262 0.90717 0.93003 0.93683 0.77483 0.88439 0.88253 0.87916 0.88554 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.56 13.29 55.43 0.74 -25.83 16 2 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 3 Si 0.90 21.08 29.54 -169.99 -5.02 16.06 16 4 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 5 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 6 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 7 C -0.54 -14.99 9.28 -34.44 -0.32 -15.31 16 8 H 0.06 1.60 7.60 -52.49 -0.40 1.20 16 9 C 0.27 7.35 5.43 -5.19 -0.03 7.32 16 10 N -0.73 -16.22 5.55 -66.41 -0.37 -16.59 16 11 C 0.69 15.06 8.57 -86.91 -0.74 14.32 16 12 O -0.60 -15.88 16.34 5.29 0.09 -15.79 16 13 N -0.75 -12.00 5.41 -65.22 -0.35 -12.35 16 14 C 0.18 2.68 5.46 -4.04 -0.02 2.65 16 15 C -0.14 -1.53 1.80 -154.51 -0.28 -1.81 16 16 C 0.12 1.10 6.80 37.16 0.25 1.36 16 17 O -0.57 -6.12 13.57 -35.23 -0.48 -6.60 16 18 C -0.16 -1.41 9.94 -26.69 -0.27 -1.67 16 19 C -0.16 -1.41 9.94 -26.69 -0.27 -1.67 16 20 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 21 H 0.02 0.73 8.14 -51.93 -0.42 0.31 16 22 H 0.02 0.74 8.14 -51.93 -0.42 0.31 16 23 H 0.39 7.27 8.34 -40.82 -0.34 6.93 16 24 H 0.39 4.98 8.16 -40.82 -0.33 4.65 16 25 H 0.06 0.89 8.09 -51.93 -0.42 0.47 16 26 H 0.07 1.28 8.10 -51.93 -0.42 0.86 16 27 H 0.05 0.49 7.74 -51.93 -0.40 0.08 16 28 H 0.04 0.34 8.09 -51.92 -0.42 -0.08 16 29 H 0.38 2.36 9.12 45.56 0.42 2.78 16 30 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 32 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16 33 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 LS Contribution 290.09 15.07 4.37 4.37 Total: -1.00 -34.87 290.09 -6.78 -41.66 By element: Atomic # 1 Polarization: 12.20 SS G_CDS: -3.99 Total: 8.21 kcal Atomic # 6 Polarization: 8.63 SS G_CDS: -1.77 Total: 6.87 kcal Atomic # 7 Polarization: -54.78 SS G_CDS: 0.01 Total: -54.77 kcal Atomic # 8 Polarization: -22.00 SS G_CDS: -0.39 Total: -22.39 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.06 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -34.87 -6.78 -41.66 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787371494.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.657 kcal (2) G-P(sol) polarization free energy of solvation -34.873 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.530 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.785 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.657 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.315 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds