Wall clock time and date at job start Thu Apr 9 2020 11:59:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.09000 * 109.38587 * 2 1 4 4 C 1.50256 * 109.30435 * 240.25413 * 2 1 3 5 5 O 1.21283 * 118.62354 * 42.69569 * 4 2 1 6 6 N 1.33710 * 122.75312 * 222.67169 * 4 2 1 7 7 C 1.46011 * 122.93105 * 1.71305 * 6 4 2 8 8 C 1.52976 * 110.04034 * 341.83582 * 7 6 4 9 9 N 1.46907 * 109.38857 * 119.78960 * 2 1 3 10 10 C 1.46896 * 111.00025 * 293.71769 * 9 2 1 11 11 C 1.53002 * 109.47243 * 169.99601 * 10 9 2 12 12 H 1.09000 * 109.46497 * 60.00307 * 11 10 9 13 13 O 1.42895 * 109.47109 * 299.99946 * 11 10 9 14 14 C 1.50706 * 109.46925 * 180.02562 * 11 10 9 15 15 H 1.07999 * 120.00196 * 0.02562 * 14 11 10 16 16 C 1.37879 * 119.99394 * 180.02562 * 14 11 10 17 17 N 1.31514 * 120.00338 * 359.97438 * 16 14 11 18 18 Si 1.86800 * 119.99426 * 180.02562 * 16 14 11 19 19 H 1.48495 * 109.47776 * 59.99746 * 18 16 14 20 20 H 1.48503 * 109.46851 * 180.02562 * 18 16 14 21 21 H 1.48498 * 109.47028 * 299.99350 * 18 16 14 22 22 H 1.09007 * 109.47204 * 300.20767 * 1 2 3 23 23 H 1.09000 * 109.47510 * 60.20829 * 1 2 3 24 24 H 1.09001 * 109.47224 * 180.21144 * 1 2 3 25 25 H 0.97003 * 118.53860 * 181.73153 * 6 4 2 26 26 H 1.08997 * 109.37672 * 102.01050 * 7 6 4 27 27 H 1.09000 * 109.37776 * 221.66481 * 7 6 4 28 28 H 1.09003 * 109.57428 * 290.50600 * 8 7 6 29 29 H 1.08998 * 109.60062 * 170.06735 * 8 7 6 30 30 H 1.09004 * 109.47041 * 49.99812 * 10 9 2 31 31 H 1.09004 * 109.47535 * 289.99851 * 10 9 2 32 32 H 0.96695 * 114.00385 * 299.99560 * 13 11 10 33 33 H 0.96996 * 119.99730 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8917 1.0282 0.0000 4 6 2.0266 -0.7036 -1.2312 5 8 1.4803 -0.4772 -2.2901 6 7 3.0461 -1.5685 -1.2085 7 6 3.7472 -1.9370 0.0181 8 6 3.4708 -0.9027 1.1108 9 7 2.0176 -0.6885 1.2026 10 6 1.6720 0.0635 2.4163 11 6 1.9691 -0.7930 3.6488 12 1 3.0290 -1.0466 3.6680 13 8 1.1932 -1.9917 3.5941 14 6 1.6139 -0.0217 4.8939 15 1 1.2158 0.9791 4.8141 16 6 1.7973 -0.5938 6.1349 17 7 2.2817 -1.8126 6.2321 18 14 1.3565 0.3620 7.6782 19 1 -0.0878 0.7062 7.6518 20 1 1.6461 -0.4688 8.8745 21 1 2.1615 1.6085 7.7353 22 1 -0.3634 0.5171 0.8882 23 1 -0.3634 0.5106 -0.8918 24 1 -0.3634 -1.0277 0.0038 25 1 3.3329 -1.9688 -2.0442 26 1 3.4026 -2.9160 0.3513 27 1 4.8188 -1.9797 -0.1767 28 1 3.9635 0.0361 0.8580 29 1 3.8473 -1.2700 2.0655 30 1 0.6121 0.3172 2.3970 31 1 2.2638 0.9779 2.4581 32 1 0.2382 -1.8416 3.5745 33 1 2.4104 -2.2151 7.1052 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000809573372.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 11:59:32 Heat of formation + Delta-G solvation = -78.781026 kcal Electronic energy + Delta-G solvation = -16578.479828 eV Core-core repulsion = 13832.235415 eV Total energy + Delta-G solvation = -2746.244414 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 228.126 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.26463 -37.40341 -35.49860 -34.41677 -32.11929 -31.04257 -29.04555 -27.27062 -25.33425 -23.02033 -22.61817 -20.24229 -18.86010 -17.42160 -16.75611 -16.61815 -15.31719 -14.91442 -14.65070 -14.32869 -14.08223 -13.91507 -13.57261 -13.00644 -12.63205 -12.36560 -12.01703 -11.61209 -11.29458 -11.21681 -11.02453 -10.93512 -10.84145 -10.54197 -10.11959 -9.64399 -9.06569 -8.96576 -8.60578 -8.19697 -7.88031 -6.05143 -4.23851 2.74581 3.26020 3.31855 3.33171 3.38621 4.08438 4.38598 4.68008 4.98975 5.20927 5.23193 5.33030 5.37273 5.44751 5.84564 5.95516 6.00787 6.04660 6.12335 6.23628 6.35383 6.47486 6.74733 6.80630 7.25748 7.34249 7.39765 7.69353 7.80303 8.13939 8.32149 8.79541 9.41567 9.57388 10.98871 Molecular weight = 228.13amu Principal moments of inertia in cm(-1) A = 0.048390 B = 0.006748 C = 0.006308 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 578.491503 B = 4148.085121 C = 4437.929527 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.062 3.938 3 H 0.067 0.933 4 C 0.531 3.469 5 O -0.562 6.562 6 N -0.718 5.718 7 C 0.116 3.884 8 C 0.032 3.968 9 N -0.515 5.515 10 C 0.025 3.975 11 C 0.239 3.761 12 H 0.055 0.945 13 O -0.554 6.554 14 C -0.577 4.577 15 H 0.054 0.946 16 C 0.081 3.919 17 N -0.858 5.858 18 Si 0.889 3.111 19 H -0.276 1.276 20 H -0.286 1.286 21 H -0.277 1.277 22 H 0.068 0.932 23 H 0.066 0.934 24 H 0.066 0.934 25 H 0.395 0.605 26 H 0.078 0.922 27 H 0.076 0.924 28 H 0.036 0.964 29 H 0.108 0.892 30 H 0.073 0.927 31 H 0.030 0.970 32 H 0.344 0.656 33 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.081 1.531 -9.553 9.896 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.049 4.049 3 H 0.085 0.915 4 C 0.318 3.682 5 O -0.440 6.440 6 N -0.370 5.370 7 C -0.009 4.009 8 C -0.096 4.096 9 N -0.241 5.241 10 C -0.102 4.102 11 C 0.181 3.819 12 H 0.072 0.928 13 O -0.355 6.355 14 C -0.615 4.615 15 H 0.073 0.927 16 C -0.125 4.125 17 N -0.493 5.493 18 Si 0.717 3.283 19 H -0.201 1.201 20 H -0.212 1.212 21 H -0.202 1.202 22 H 0.087 0.913 23 H 0.085 0.915 24 H 0.085 0.915 25 H 0.230 0.770 26 H 0.096 0.904 27 H 0.094 0.906 28 H 0.054 0.946 29 H 0.126 0.874 30 H 0.091 0.909 31 H 0.049 0.951 32 H 0.187 0.813 33 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 2.166 0.850 -9.734 10.009 hybrid contribution -0.065 1.464 0.681 1.616 sum 2.102 2.314 -9.054 9.578 Atomic orbital electron populations 1.21663 0.91515 1.03313 1.02239 1.21727 0.98279 0.96230 0.88697 0.91544 1.20203 0.78840 0.78666 0.90474 1.90703 1.56971 1.64604 1.31716 1.45575 1.34636 1.45486 1.11271 1.21550 0.95948 0.99607 0.83766 1.22524 0.89438 0.97432 1.00242 1.62612 1.12097 1.48071 1.01308 1.23252 1.00687 0.95864 0.90429 1.19308 0.92612 0.82303 0.87681 0.92779 1.86550 1.18899 1.33357 1.96731 1.21603 1.46690 1.01635 0.91599 0.92737 1.25005 0.93966 0.94571 0.98985 1.70059 1.42014 1.13128 1.24144 0.86733 0.79097 0.79945 0.82565 1.20111 1.21178 1.20226 0.91310 0.91527 0.91536 0.76959 0.90423 0.90597 0.94613 0.87427 0.90882 0.95145 0.81308 0.92882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.93 8.86 37.15 0.33 -1.60 16 2 C 0.06 0.98 2.50 -69.08 -0.17 0.81 16 3 H 0.07 1.01 8.12 -51.93 -0.42 0.59 16 4 C 0.53 8.54 7.37 -11.68 -0.09 8.46 16 5 O -0.56 -10.46 17.05 5.55 0.09 -10.37 16 6 N -0.72 -9.52 5.52 -61.07 -0.34 -9.85 16 7 C 0.12 1.42 7.39 -4.32 -0.03 1.39 16 8 C 0.03 0.48 5.46 -3.68 -0.02 0.46 16 9 N -0.51 -8.75 4.33 -228.07 -0.99 -9.74 16 10 C 0.02 0.47 4.41 -3.83 -0.02 0.45 16 11 C 0.24 5.66 2.75 -27.88 -0.08 5.59 16 12 H 0.05 1.39 6.37 -51.93 -0.33 1.06 16 13 O -0.55 -13.69 12.59 -35.23 -0.44 -14.13 16 14 C -0.58 -15.12 8.76 -34.44 -0.30 -15.42 16 15 H 0.05 1.39 7.74 -52.49 -0.41 0.99 16 16 C 0.08 2.19 5.40 -17.82 -0.10 2.10 16 17 N -0.86 -24.52 12.84 55.43 0.71 -23.81 16 18 Si 0.89 20.55 29.54 -169.99 -5.02 15.53 16 19 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 20 H -0.29 -6.60 7.11 56.52 0.40 -6.19 16 21 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 22 H 0.07 0.98 6.37 -51.93 -0.33 0.65 16 23 H 0.07 0.95 7.80 -51.93 -0.41 0.54 16 24 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 25 H 0.40 4.45 8.84 -40.82 -0.36 4.09 16 26 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 27 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 28 H 0.04 0.50 8.08 -51.93 -0.42 0.09 16 29 H 0.11 1.78 6.10 -51.93 -0.32 1.46 16 30 H 0.07 1.37 6.09 -51.93 -0.32 1.05 16 31 H 0.03 0.58 8.11 -51.93 -0.42 0.15 16 32 H 0.34 7.72 9.04 45.56 0.41 8.13 16 33 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 LS Contribution 271.48 15.07 4.09 4.09 Total: -1.00 -30.91 271.48 -6.08 -37.00 By element: Atomic # 1 Polarization: 12.77 SS G_CDS: -3.72 Total: 9.05 kcal Atomic # 6 Polarization: 2.71 SS G_CDS: -0.47 Total: 2.24 kcal Atomic # 7 Polarization: -42.79 SS G_CDS: -0.61 Total: -43.41 kcal Atomic # 8 Polarization: -24.15 SS G_CDS: -0.35 Total: -24.50 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -5.02 Total: 15.53 kcal Total LS contribution 4.09 Total: 4.09 kcal Total: -30.91 -6.08 -37.00 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000809573372.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.783 kcal (2) G-P(sol) polarization free energy of solvation -30.914 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.697 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.084 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.998 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.781 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds