Wall clock time and date at job start Thu Apr 9 2020 11:59:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.09000 * 109.38587 * 2 1 4 4 C 1.50256 * 109.30435 * 240.25413 * 2 1 3 5 5 O 1.21283 * 118.62354 * 42.69569 * 4 2 1 6 6 N 1.33710 * 122.75312 * 222.67169 * 4 2 1 7 7 C 1.46011 * 122.93105 * 1.71305 * 6 4 2 8 8 C 1.52976 * 110.04034 * 341.83582 * 7 6 4 9 9 N 1.46907 * 109.38857 * 119.78960 * 2 1 3 10 10 C 1.46896 * 111.00025 * 293.71769 * 9 2 1 11 11 C 1.53002 * 109.47243 * 169.99601 * 10 9 2 12 12 H 1.09000 * 109.46497 * 60.00307 * 11 10 9 13 13 O 1.42895 * 109.47109 * 299.99946 * 11 10 9 14 14 C 1.50706 * 109.46925 * 180.02562 * 11 10 9 15 15 H 1.07999 * 120.00196 * 0.02562 * 14 11 10 16 16 C 1.37879 * 119.99394 * 180.02562 * 14 11 10 17 17 N 1.31514 * 120.00338 * 359.97438 * 16 14 11 18 18 Si 1.86800 * 119.99426 * 180.02562 * 16 14 11 19 19 H 1.48495 * 109.47776 * 59.99746 * 18 16 14 20 20 H 1.48503 * 109.46851 * 180.02562 * 18 16 14 21 21 H 1.48498 * 109.47028 * 299.99350 * 18 16 14 22 22 H 1.09007 * 109.47204 * 300.20767 * 1 2 3 23 23 H 1.09000 * 109.47510 * 60.20829 * 1 2 3 24 24 H 1.09001 * 109.47224 * 180.21144 * 1 2 3 25 25 H 0.97003 * 118.53860 * 181.73153 * 6 4 2 26 26 H 1.08997 * 109.37672 * 102.01050 * 7 6 4 27 27 H 1.09000 * 109.37776 * 221.66481 * 7 6 4 28 28 H 1.09003 * 109.57428 * 290.50600 * 8 7 6 29 29 H 1.08998 * 109.60062 * 170.06735 * 8 7 6 30 30 H 1.09004 * 109.47041 * 49.99812 * 10 9 2 31 31 H 1.09004 * 109.47535 * 289.99851 * 10 9 2 32 32 H 0.96695 * 114.00385 * 299.99560 * 13 11 10 33 33 H 0.96996 * 119.99730 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8917 1.0282 0.0000 4 6 2.0266 -0.7036 -1.2312 5 8 1.4803 -0.4772 -2.2901 6 7 3.0461 -1.5685 -1.2085 7 6 3.7472 -1.9370 0.0181 8 6 3.4708 -0.9027 1.1108 9 7 2.0176 -0.6885 1.2026 10 6 1.6720 0.0635 2.4163 11 6 1.9691 -0.7930 3.6488 12 1 3.0290 -1.0466 3.6680 13 8 1.1932 -1.9917 3.5941 14 6 1.6139 -0.0217 4.8939 15 1 1.2158 0.9791 4.8141 16 6 1.7973 -0.5938 6.1349 17 7 2.2817 -1.8126 6.2321 18 14 1.3565 0.3620 7.6782 19 1 -0.0878 0.7062 7.6518 20 1 1.6461 -0.4688 8.8745 21 1 2.1615 1.6085 7.7353 22 1 -0.3634 0.5171 0.8882 23 1 -0.3634 0.5106 -0.8918 24 1 -0.3634 -1.0277 0.0038 25 1 3.3329 -1.9688 -2.0442 26 1 3.4026 -2.9160 0.3513 27 1 4.8188 -1.9797 -0.1767 28 1 3.9635 0.0361 0.8580 29 1 3.8473 -1.2700 2.0655 30 1 0.6121 0.3172 2.3970 31 1 2.2638 0.9779 2.4581 32 1 0.2382 -1.8416 3.5745 33 1 2.4104 -2.2151 7.1052 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000809573372.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 11:59:31 Heat of formation + Delta-G solvation = -105.015394 kcal Electronic energy + Delta-G solvation = -16579.617436 eV Core-core repulsion = 13832.235415 eV Total energy + Delta-G solvation = -2747.382021 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 228.126 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.51542 -38.86390 -37.09939 -35.77355 -34.16573 -32.35763 -30.57347 -28.72006 -26.94131 -24.61973 -23.80388 -21.91558 -20.06329 -19.11477 -18.24249 -17.88256 -16.64060 -16.59912 -16.19915 -16.01562 -15.56796 -15.40591 -14.94075 -14.36909 -14.33167 -13.65420 -13.33528 -13.09412 -12.87776 -12.81696 -12.71389 -12.45312 -12.27632 -12.13313 -11.94838 -10.98802 -10.89325 -10.63584 -10.11625 -10.03488 -9.29225 -8.09809 -6.34697 1.44334 1.44791 1.49744 1.52785 2.27000 2.40612 2.82009 3.17179 3.48977 3.86688 3.97397 4.10696 4.23652 4.33881 4.37864 4.56642 4.69906 4.78527 4.83580 4.86042 4.99166 5.09147 5.25464 5.61701 5.71234 5.81146 5.91707 6.09264 6.17537 6.21419 6.77907 7.14578 7.39543 7.67147 8.94036 Molecular weight = 228.13amu Principal moments of inertia in cm(-1) A = 0.048390 B = 0.006748 C = 0.006308 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 578.491503 B = 4148.085121 C = 4437.929527 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.062 3.938 3 H 0.076 0.924 4 C 0.529 3.471 5 O -0.591 6.591 6 N -0.706 5.706 7 C 0.121 3.879 8 C 0.027 3.973 9 N -0.524 5.524 10 C 0.043 3.957 11 C 0.240 3.760 12 H 0.030 0.970 13 O -0.569 6.569 14 C -0.589 4.589 15 H 0.059 0.941 16 C 0.030 3.970 17 N -0.897 5.897 18 Si 0.954 3.046 19 H -0.269 1.269 20 H -0.287 1.287 21 H -0.269 1.269 22 H 0.074 0.926 23 H 0.072 0.928 24 H 0.056 0.944 25 H 0.408 0.592 26 H 0.073 0.927 27 H 0.116 0.884 28 H 0.048 0.952 29 H 0.089 0.911 30 H 0.078 0.922 31 H 0.032 0.968 32 H 0.352 0.648 33 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.242 2.253 -9.924 10.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.049 4.049 3 H 0.093 0.907 4 C 0.315 3.685 5 O -0.472 6.472 6 N -0.357 5.357 7 C -0.002 4.002 8 C -0.101 4.101 9 N -0.250 5.250 10 C -0.085 4.085 11 C 0.182 3.818 12 H 0.047 0.953 13 O -0.372 6.372 14 C -0.627 4.627 15 H 0.077 0.923 16 C -0.173 4.173 17 N -0.534 5.534 18 Si 0.780 3.220 19 H -0.194 1.194 20 H -0.212 1.212 21 H -0.195 1.195 22 H 0.092 0.908 23 H 0.090 0.910 24 H 0.075 0.925 25 H 0.245 0.755 26 H 0.091 0.909 27 H 0.134 0.866 28 H 0.066 0.934 29 H 0.107 0.893 30 H 0.096 0.904 31 H 0.051 0.949 32 H 0.196 0.804 33 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 2.347 1.568 -10.115 10.501 hybrid contribution -0.079 1.210 0.770 1.437 sum 2.268 2.778 -9.345 10.009 Atomic orbital electron populations 1.21623 0.91050 1.02830 1.02769 1.21757 0.98724 0.96552 0.87907 0.90677 1.20224 0.79197 0.79067 0.89987 1.90693 1.58125 1.65854 1.32513 1.45504 1.33615 1.44393 1.12221 1.21608 0.98058 0.98132 0.82438 1.22583 0.88291 0.98793 1.00439 1.62534 1.13569 1.47952 1.00986 1.22844 1.01018 0.94931 0.89674 1.19182 0.91186 0.82292 0.89164 0.95275 1.86501 1.19655 1.34146 1.96894 1.22034 1.45917 1.01960 0.92786 0.92317 1.25807 0.93929 0.95373 1.02191 1.70191 1.43630 1.14832 1.24722 0.85695 0.79048 0.78632 0.78671 1.19408 1.21242 1.19451 0.90766 0.90952 0.92502 0.75520 0.90909 0.86638 0.93385 0.89306 0.90370 0.94933 0.80400 0.93051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.56 8.86 71.98 0.64 -2.92 16 2 C 0.06 1.85 2.50 44.03 0.11 1.96 16 3 H 0.08 2.14 8.12 -2.39 -0.02 2.12 16 4 C 0.53 16.10 7.37 87.68 0.65 16.74 16 5 O -0.59 -21.22 17.05 -3.04 -0.05 -21.27 16 6 N -0.71 -17.10 5.52 -466.11 -2.57 -19.67 16 7 C 0.12 2.70 7.39 86.46 0.64 3.34 16 8 C 0.03 0.78 5.46 86.24 0.47 1.25 16 9 N -0.52 -17.23 4.33 -875.49 -3.79 -21.02 16 10 C 0.04 1.60 4.41 86.30 0.38 1.98 16 11 C 0.24 11.38 2.75 29.85 0.08 11.47 16 12 H 0.03 1.54 6.37 -2.39 -0.02 1.52 16 13 O -0.57 -28.29 12.59 -148.98 -1.88 -30.16 16 14 C -0.59 -30.67 8.76 25.60 0.22 -30.45 16 15 H 0.06 2.94 7.74 -2.91 -0.02 2.92 16 16 C 0.03 1.60 5.40 84.66 0.46 2.06 16 17 N -0.90 -51.73 12.84 21.45 0.28 -51.45 16 18 Si 0.95 41.88 29.54 68.60 2.03 43.90 16 19 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 20 H -0.29 -12.51 7.11 99.48 0.71 -11.80 16 21 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 22 H 0.07 2.00 6.37 -2.38 -0.02 1.99 16 23 H 0.07 1.97 7.80 -2.39 -0.02 1.95 16 24 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 25 H 0.41 8.15 8.84 -92.71 -0.82 7.33 16 26 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 27 H 0.12 1.73 8.14 -2.39 -0.02 1.71 16 28 H 0.05 1.26 8.08 -2.39 -0.02 1.24 16 29 H 0.09 2.92 6.10 -2.39 -0.01 2.90 16 30 H 0.08 2.83 6.09 -2.38 -0.01 2.81 16 31 H 0.03 1.19 8.11 -2.39 -0.02 1.18 16 32 H 0.35 15.82 9.04 -74.06 -0.67 15.15 16 33 H 0.26 14.34 8.31 -92.71 -0.77 13.57 16 Total: -1.00 -64.99 271.48 -2.70 -67.69 By element: Atomic # 1 Polarization: 26.92 SS G_CDS: -0.36 Total: 26.56 kcal Atomic # 6 Polarization: 1.78 SS G_CDS: 3.65 Total: 5.43 kcal Atomic # 7 Polarization: -86.06 SS G_CDS: -6.09 Total: -92.15 kcal Atomic # 8 Polarization: -49.51 SS G_CDS: -1.93 Total: -51.44 kcal Atomic # 14 Polarization: 41.88 SS G_CDS: 2.03 Total: 43.90 kcal Total: -64.99 -2.70 -67.69 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000809573372.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.330 kcal (2) G-P(sol) polarization free energy of solvation -64.989 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.318 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.697 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.686 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.015 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds